Search results for "proteomics"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
16	Neal O. Jeffries	Performance of a genetic algorithm for mass spectrometry proteomics.	BMC Bioinform.	2004	DBLP DOI BibTeX RDF
16	P. P. Vaidyanathan, Byung-Jun Yoon	The role of signal-processing concepts in genomics and proteomics.	J. Frankl. Inst.	2004	DBLP DOI BibTeX RDF
16	Arlo Z. Randall, Pierre Baldi, Luis P. Villarreal	Structural proteomics of the poxvirus family.	Artif. Intell. Medicine	2004	DBLP DOI BibTeX RDF
16	Suraj Peri, J. Daniel Navarro, Troels Z. Kristiansen, Ramars Amanchy, Vineeth Surendranath, Babylakshmi Muthusamy, T. K. B. Gandhi, K. N. Chandrika, Nandan Deshpande, Shubha Suresh, B. P. Rashmi, K. Shanker, N. Padma, Vidya Niranjan, H. C. Harsha, Naveen Talreja, B. M. Vrushabendra, M. A. Ramya, A. J. Yatish, Mary Joy, H. N. Shivashankar, M. P. Kavitha, Minal Menezes, Dipanwita Roy Chowdhury, Neelanjana Ghosh, R. Saravana, Sreenath Chandran, S. Sujatha Mohan, Chandra Kiran Jonnalagadda, C. K. Prasad, Chandan Kumar-Sinha, Krishna S. Deshpande, Akhilesh Pandey	Human protein reference database as a discovery resource for proteomics.	Nucleic Acids Res.	2004	DBLP DOI BibTeX RDF
16	Zheng Rong Yang, Kuo-Chen Chou	Bio-support vector machines for computational proteomics.	Bioinform.	2004	DBLP DOI BibTeX RDF
16	Leping Li, David M. Umbach, Paul Terry, Jack A. Taylor	Application of the GA/KNN method to SELDI proteomics data.	Bioinform.	2004	DBLP DOI BibTeX RDF
16	Markus Anderle II, Sushmita Roy, Hua Lin, Christopher Becker, Keith Joho	Quantifying reproducibility for differential proteomics: noise analysis for protein liquid chromatography-mass spectrometry of human serum.	Bioinform.	2004	DBLP DOI BibTeX RDF
16	Graziela Miê Peres Lopes, Sandro José de Souza	Dissecting the Human Spliceosome through Bioinformatics and Proteomics Approaches.	J. Bioinform. Comput. Biol.	2004	DBLP DOI BibTeX RDF
16	Oliver Kohlbacher, Knut Reinert	Differenzielle Proteomanalyse - Experimentelle Methoden, algorithmische Herausforderungen (Differential Analysis in Proteomics: Experimental Methods, Algorithmic Challenges).	it Inf. Technol.	2004	DBLP BibTeX RDF
16	Jonathan M. Cooper, Erik A. Johannessen, David R. S. Cumming	Bridging the Gap Between Micro and Nanotechnology: Using Lab-on-a-Chip to Enable Nanosensors for Genomics, Proteomics, and Diagnostic Screening.	NPC	2004	DBLP DOI BibTeX RDF
16	Metin Akay	Proteomics and Genomics Signal Processing.	CIT	2004	DBLP DOI BibTeX RDF
16	Joel C. Hunter, Joshua N. Adkins, Joel G. Pounds, John H. Miller	Facilitating interpretation of mass spectrometry based proteomics data.	METMBS	2004	DBLP BibTeX RDF
16	Susan Havre, Mudita Singhal, Banu Gopalan, Deborah A. Payne, Kyle R. Klicker, Gary Kiebel, Kenneth J. Auberry, Eric G. Stephan, Bobbie-Jo M. Webb-Robertson, Deborah K. Gracio	Integrating Evolving Tools for Proteomics Research.	METMBS	2004	DBLP BibTeX RDF
16	Bruce Randall Donald	Algorithmic Challenges in Structural Molecular Biology and Proteomics.	WAFR	2004	DBLP DOI BibTeX RDF
16	Weimin Feng, Gaurav Tuteja, May D. Wang	EGOMinor: A Genomics and Proteomics Data Computation and Interpretation System for Biomedical Applications.	CSB	2004	DBLP DOI BibTeX RDF
16	Walter Schubert	Invited Talk: Fast Track to Disease-Specific Drugs? The Impact of In-Situ Proteomics Imaging (Toponomics).	German Conference on Bioinformatics	2004	DBLP BibTeX RDF
16	Elisabeth Gasteiger, Alexandre Gattiker, Christine Hoogland, Ivan Ivanyi, Ron D. Appel, Amos Bairoch	ExPASy: the proteomics server for in-depth protein knowledge and analysis.	Nucleic Acids Res.	2003	DBLP DOI BibTeX RDF
16	Ray L. Somorjai, B. Dolenko, Richard Baumgartner	Class prediction and discovery using gene microarray and proteomics mass spectroscopy data: curses, caveats, cautions.	Bioinform.	2003	DBLP DOI BibTeX RDF
16	Aubrey E. Hill, Helen Kim	The UAB Proteomics Database.	Bioinform.	2003	DBLP DOI BibTeX RDF
16	P. Kearney, P. Thibault	Bioinformatics Meets Proteomics - Bridging the Gap between Massspectrometry Data Analysis and Cell Biology.	J. Bioinform. Comput. Biol.	2003	DBLP DOI BibTeX RDF
16	Cathy H. Wu	The Protein Information Resource for Functional Genomics and Proteomics.	Computational Biology and Genome Informatics	2003	DBLP BibTeX RDF
16	Zhenzhen Kou, William W. Cohen, Robert F. Murphy	Extracting information from text and images for location proteomics.	BIOKDD	2003	DBLP BibTeX RDF
16	Pierre Baldi	Machine Learning Methods for Computational Proteomics and Beyond.	AI	2003	DBLP DOI BibTeX RDF
16	Mark W. Duncan, Kim Fung, Heng Wang, Chia-Yu Yen, Krzysztof J. Cios	Identification of Contaminants in Proteomics Mass Spectrometry Data.	CSB	2003	DBLP DOI BibTeX RDF
16	Sophia R. He, Edmond J. Breen, Sybille M. N. Hunt	Proteomics: approaches and image analysis tools for drug discovery.	ICME	2003	DBLP DOI BibTeX RDF
16	Mark Gerstein	Computational Proteomics: Genome-scale Analysis of Protein Structure, Function, & Evolution(Invited Talk).	German Conference on Bioinformatics	2003	DBLP BibTeX RDF
16	W. John MacMullen	PROMIS: An XML-based metadata framework for proteomics.	ASIST	2003	DBLP DOI BibTeX RDF
16	Milan Randic, Subhash C. Basak	A Comparative Study of Proteomics Maps Using Graph Theoretical Biodescriptors.	J. Chem. Inf. Comput. Sci.	2002	DBLP DOI BibTeX RDF
16	Metin Akay	Scanning the issue - bioinformatics, part II: genomics and proteomics engineering in medicine and biology.	Proc. IEEE	2002	DBLP DOI BibTeX RDF
16	Claus-Wilhelm von der Lieth	Expanding Proteomics to Glycobiology - Session Introduction.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
16	W. John MacMullen, David A. Fenstermacher	Toward the Development of an Open Metadata Framework for Compositional Proteomics.	JCIS	2002	DBLP BibTeX RDF
16	Ruben Abagyan	Computational structural proteomics and virtual ligand screening.	RECOMB	2002	DBLP DOI BibTeX RDF
16	W. John MacMullen, Mary C. Parmelee, David A. Fenstermacher, Bradley M. Hemminger	Defining an Open Metadata Framework for Proteomics: The PROMIS Project.	AMIA	2002	DBLP BibTeX RDF
16	Milan Randic	On Graphical and Numerical Characterization of Proteomics Maps.	J. Chem. Inf. Comput. Sci.	2001	DBLP DOI BibTeX RDF
16	Milan Randic, Jure Zupan, Marjana Novic	On 3-D Graphical Representation of Proteomics Maps and Their Numerical Characterization.	J. Chem. Inf. Comput. Sci.	2001	DBLP DOI BibTeX RDF
16	Paul Bertone, Yuval Kluger, Ning Lan, Deyou Zheng, Dinesh Christendat, Adelinda Yee, Aled M. Edwards, Cheryl H. Arrowsmith, Gaetano T. Montelione, Mark Gerstein	SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics.	Nucleic Acids Res.	2001	DBLP DOI BibTeX RDF
16	André Goffeau	Informatics, genomics, proteomics and phylogenetics by the yeast Eurofanatics.	German Conference on Bioinformatics	1997	DBLP BibTeX RDF
12	Amandeep S. Sidhu, Matthew I. Bellgard	Protein Data Integration Problem.	Biomedical Data and Applications	2009	DBLP DOI BibTeX RDF
12	Bahrad A. Sokhansanj, Suman Datta, Xiaohua Hu 0001	Scalable Dynamic Fuzzy Biomolecular Network Models for Large Scale Biology.	Fuzzy Systems in Bioinformatics and Computational Biology	2009	DBLP DOI BibTeX RDF
12	Tsepo L. Tsekoa	Molecular modelling of calcium dependent protein kinase 4 (CDPK4) from Plasmodium falciparum.	SAICSIT	2009	DBLP DOI BibTeX RDF	Plasmodium falciparum, protein kinase, structural bioinformatics, Malaria, homology modelling
12	Lu Mao, Khalid Belhajjame, Norman W. Paton, Alvaro A. A. Fernandes	Defining and Using Schematic Correspondences for Automatically Generating Schema Mappings.	CAiSE	2009	DBLP DOI BibTeX RDF	Schematic correspondences, schema mappings, mapping generation
12	Yu Chen, Kyungsook Han	Dynamic Identification and Visualization of Gene Regulatory Networks from Time-Series Gene Expression Profiles.	ICIC (1)	2009	DBLP DOI BibTeX RDF
12	James R. Green, Hanan Mahmoud, Michel Dumontier	Modeling tryptic digestion on the Cell BE processor.	CCECE	2009	DBLP DOI BibTeX RDF
12	Man-Wai Mak, Jian Guo 0002, Sun-Yuan Kung	PairProSVM: Protein Subcellular Localization Based on Local Pairwise Profile Alignment and SVM.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	profile alignment, Mercer condition, Support Vector Machines, Kernel Methods, Subcellular localization
12	Sebastian Böcker, Veli Mäkinen	Combinatorial Approaches for Mass Spectra Recalibration.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	combinatorial pattern matching, computational geometry, mass spectrometry, biotechnology
12	Jung-Hsien Chiang, Tsung-Lu Michael Lee	In Silico Prediction of Human Protein Interactions Using Fuzzy-SVM Mixture Models and Its Application to Cancer Research.	IEEE Trans. Fuzzy Syst.	2008	DBLP DOI BibTeX RDF
12	Kenneth McGarry, Kim Bartlett, Morteza Pourfarzam	Exploratory Data Analysis for Investigating GC-MS Biomarkers.	PRIB	2008	DBLP DOI BibTeX RDF
12	Viet Anh Nguyen, Zdena Koukolíková-Nicola, Franco Bagnoli, Pietro Liò	Bayesian Inference on Hidden Knowledge in High-Throughput Molecular Biology Data.	PRICAI	2008	DBLP DOI BibTeX RDF
12	Gregorio Mercurio, Silvio Maglio, Antonella Agrusti, Giorgio De Nunzio, Rosella Cataldo, Ivan De Mitri, Marco Favetta, Andrea Massafra, Giovanni Marsella, Daniele Vergara, Michele Maffia	Network P2P for exploring and visualization of proteomic data produced by two dimensional electrophoresis.	CBMS	2008	DBLP DOI BibTeX RDF
12	Zdena Koukolíková-Nicola, Pietro Liò, Franco Bagnoli	Inference on Missing Values in Genetic Networks Using High-Throughput Data.	EvoBIO	2008	DBLP DOI BibTeX RDF
12	Alexandre Noma, Alvaro Pardo, Roberto Marcondes Cesar Junior	Structural Matching of 2D Electrophoresis Gels using Graph Models.	SIBGRAPI	2008	DBLP DOI BibTeX RDF
12	Timothy Lee, Rahul Singh	Comparative Analysis of Disulfide Bond Determination Using Computational-Predictive Methods and Mass Spectrometry-Based Algorithmic Approach.	BIRD	2008	DBLP DOI BibTeX RDF
12	Alberto D. Pascual-Montano	Non-negative matrix factorization in bioinformatics: Towards understanding biological processes.	ISCAS	2008	DBLP DOI BibTeX RDF
12	Changyong Yu, Guoren Wang, Wendan Zhai	Ions Classification in Peptide Tandem Mass Spectra.	FSKD (4)	2008	DBLP DOI BibTeX RDF
12	Trung-Nghia Vu, Syng-Yup Ohn, Chul-Woo Kim	RISC: A New Filter Approach for Feature Selection from Proteomic Data.	ICMB	2008	DBLP DOI BibTeX RDF
12	Cheng-Wei Hsieh, Hui-Huang Hsu, Ming-Da Lu	Protein Disordered Region Prediction by SVM with Post-Processing.	CISIS	2008	DBLP DOI BibTeX RDF
12	Alexandros Kalousis, Julien Prados, Melanie Hilario	Stability of feature selection algorithms: a study on high-dimensional spaces.	Knowl. Inf. Syst.	2007	DBLP DOI BibTeX RDF	Feature stability, Feature selection, High dimensionality
12	Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt 0001, Knut Reinert	A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data.	RECOMB	2007	DBLP DOI BibTeX RDF
12	Melissa Freedenberg, Chanchala Kaddi, Chang F. Quo, May D. Wang	Review of Systems Biology Simulation Tools for Translational Research.	BIBE	2007	DBLP DOI BibTeX RDF
12	Brian D. Athey	Integrative Biomedical Informatics.	BIBE	2007	DBLP DOI BibTeX RDF
12	Alireza Hadj Khodabakhshi, Mehdi Mirzazadeh, Arvind Gupta	An efficient data structure for applying multiple seeds in homology search.	BIBE	2007	DBLP DOI BibTeX RDF
12	Cuong To, Jiri Vohradsky	Binary classification using parallel genetic algorithm.	IEEE Congress on Evolutionary Computation	2007	DBLP DOI BibTeX RDF
12	Peter J. Hunter	Heart Modeling, Computational Physiology and the IUPS Physiome Project.	ER	2007	DBLP DOI BibTeX RDF
12	Yu Chen, Guangyu Cui, Kyungsook Han	Multi-Layered Networks for Visualizing the Interactions between Heterogeneous Proteins.	FBIT	2007	DBLP DOI BibTeX RDF
12	Zheng Yin, Xiaobo Zhou 0001, Honghui Wang, Youxian Sun, Stephen T. C. Wong	Detecting Biomarkers for Major Adverse Cardiac Events Using SVM with PLS Feature Selection and Extraction.	ISNN (2)	2007	DBLP DOI BibTeX RDF
12	Wenxue Hong, Hui Meng, Liqiang Wang, Jialin Song	Research on Patterns of Cancer Markers Based on Cross Section Imaging of Serum Proteomic Data.	ICIC (1)	2007	DBLP DOI BibTeX RDF
12	Marius C. Codrea, Connie R. Jimenez, Sander R. Piersma, Jaap Heringa, Elena Marchiori	Robust Peak Detection and Alignment of nanoLC-FT Mass Spectrometry Data.	EvoBIO	2007	DBLP DOI BibTeX RDF
12	Byoung-Tak Zhang	Random Hypergraph Models of Learning and Memory in Biomolecular Networks: Shorter-Term Adaptability vs. Longer-Term Persistency.	FOCI	2007	DBLP DOI BibTeX RDF
12	Daniel G. Chavarría-Miranda, Andrès Márquez	Assessing the potential of hybrid hpc systems for scientific applications: a case study.	Conf. Computing Frontiers	2007	DBLP DOI BibTeX RDF	hybrid CPU/FPGA systems, data-intensive applications
12	B. Sathiyabhama, N. P. Gopalan	Mining Gene Expression Data Using Enhanced Intelligence Clustering Technique.	FSKD (2)	2007	DBLP DOI BibTeX RDF
12	Pavel A. Pevzner	Shotgun Protein Sequencing.	WABI	2007	DBLP DOI BibTeX RDF
12	Panagiotis Bougioukos, Dionisis A. Cavouras, Antonis Daskalakis, Ioannis Kalatzis, Spiros Kostopoulos, Pantelis Georgiadis, George Nikiforidis, Anastasios Bezerianos	Biomarker Selection System, Employing an Iterative Peak Selection Method, for Identifying Biomarkers Related to Prostate Cancer.	CAIP	2007	DBLP DOI BibTeX RDF	Biomarker Selection, Classification, Mass-Spectrometry
12	Ahmed M. Amin, Mithuna Thottethodi, T. N. Vijaykumar, Steven Wereley, Stephen C. Jacobson	Aquacore: a programmable architecture for microfluidics.	ISCA	2007	DBLP DOI BibTeX RDF	fluidic, fluidic microarchitecture, programmable lab on a chip, microfluidics, instruction set
12	Sobha Mathew Tharayil, Ted Kalbfleisch, Anup Kumar	Service-Oriented Laboratory Information Management System for Life Sciences Research.	IEEE SCC	2007	DBLP DOI BibTeX RDF
12	Gregory Piatetsky-Shapiro, Chabane Djeraba, Lise Getoor, Robert Grossman, Ronen Feldman, Mohammed Javeed Zaki	What are the grand challenges for data mining?: KDD-2006 panel report.	SIGKDD Explor.	2006	DBLP DOI BibTeX RDF	X-prize, data mining, text mining, bioinformatics, web mining, image mining, grand challenge, link mining, video mining, multimedia mining
12	Tuan D. Pham, Vikram Chandramohan, Xiaobo Zhou 0001, Stephen T. C. Wong	Robust Feature Extraction and Reduction of Mass Spectrometry Data for Cancer Classification.	ICDM Workshops	2006	DBLP DOI BibTeX RDF
12	Quan Wen 0001, Jean Gao, Kate Luby-Phelps	Region-based tracking of protein compounds.	ISBI	2006	DBLP DOI BibTeX RDF
12	Satya Sanket Sahoo, Christopher Thomas 0001, Amit P. Sheth, William S. York, Samir Tartir	Knowledge modeling and its application in life sciences: a tale of two ontologies.	WWW	2006	DBLP DOI BibTeX RDF	ProPreO, bioinformatics ontology, biological ontology development, glycO, glycoproteomics, ontology structural metrics, semantic bioinformatics, ontology population
12	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001	Integration of Protein Data Sources Through PO.	DEXA	2006	DBLP DOI BibTeX RDF
12	Quan Wen 0001, Jean Gao, Kate Luby-Phelps	Markov Chain Monte Carlo Data Association for Merge and Split Detection in Tracking Protein Clusters.	ICPR (1)	2006	DBLP DOI BibTeX RDF
12	Patrick May, Hans-Christian Ehrlich, Thomas Steinke 0001	ZIB Structure Prediction Pipeline: Composing a Complex Biological Workflow Through Web Services.	Euro-Par	2006	DBLP DOI BibTeX RDF
12	Julien Prados, Alexandros Kalousis, Melanie Hilario	On Preprocessing of SELDI-MS Data and its Evaluation.	CBMS	2006	DBLP DOI BibTeX RDF
12	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001	Advances in Protein Ontology Project.	CBMS	2006	DBLP DOI BibTeX RDF
12	Alun D. Preece, Binling Jin, Edoardo Pignotti, Paolo Missier, Suzanne M. Embury, David Stead, Al Brown	Managing Information Quality in e-Science Using Semantic Web Technology.	ESWC	2006	DBLP DOI BibTeX RDF
12	Samuel Kerrien, Henning Hermjakob	Development and implementation of the PSI MI standard for molecular interaction.	WSC	2006	DBLP DOI BibTeX RDF
12	Alireza Shaneh, Gregory Butler	Bayesian Learning for Feed-Forward Neural Network with Application to Proteomic Data: The Glycosylation Sites Detection of the Epidermal Growth Factor-Like Proteins Associated with Cancer as a Case Study.	Canadian AI	2006	DBLP DOI BibTeX RDF
12	Amandeep S. Sidhu, Tharam S. Dillon, Farookh Khadeer Hussain	Accomplishments and Challenges of Protein Ontology.	COMPSAC (1)	2006	DBLP DOI BibTeX RDF
12	Hansruedi Peter, Bernd Fischer 0003, Joachim M. Buhmann	Probabilistic De Novo Peptide Sequencing with Doubly Charged Ions.	DAGM-Symposium	2006	DBLP DOI BibTeX RDF
12	Christophe Blanchet, Christophe Combet, Gilbert Deléage	Integrating Bioinformatics Resources on the EGEE Grid Platform.	CCGRID	2006	DBLP DOI BibTeX RDF
12	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001	Protein Data Sources Management Using Semantics.	ASWC	2006	DBLP DOI BibTeX RDF	Knowledge Mana-gement, Information Retrieval, Data Integration, Data Semantics, Biomedical Ontologies, Protein Ontology
12	Nasreddine Hireche, J. M. Pierre Langlois, Gabriela Nicolescu	Survey of Biological High Performance Computing: Algorithms, Implementations and Outlook Research.	CCECE	2006	DBLP DOI BibTeX RDF
12	Jean-Charles Boisson, Laetitia Jourdan, El-Ghazali Talbi, Christian Rolando	A Preliminary Work on Evolutionary Identification of Protein Variants and New Proteins on Grids.	AINA (2)	2006	DBLP DOI BibTeX RDF
12	Hui-Huang Hsu, Chao-Hsun Yang, Cheng-Wei Hsieh, Chien-Chung Cheng	An Integrated Information System for Protein Identification.	AINA (1)	2006	DBLP DOI BibTeX RDF
12	Vanathi Gopalakrishnan, Philip Ganchev, Srikanth Ranganathan, Robert P. Bowser	Rule Learning for Disease-Specific Biomarker Discovery from Clinical Proteomic Mass Spectra.	BioDM	2006	DBLP DOI BibTeX RDF
12	Christopher S. Oehmen, Lee Ann McCue, Joshua N. Adkins, Katrina M. Waters, Tim Carlson, William R. Cannon, Bobbie-Jo M. Webb-Robertson, Douglas J. Baxter, Elena S. Peterson, Mudita Singhal, Anuj R. Shah, Kyle R. Klicker	Analytics challenge - High-throughput visual analytics biological sciences: turning data into knowledge.	SC	2006	DBLP DOI BibTeX RDF
12	Kostas Marias, Jorge Ripoll, Heiko Meyer, Vasilis Ntziachristos, Stelios C. Orphanoudakis	Image analysis for assessing molecular activity changes in time-dependent geometries.	IEEE Trans. Medical Imaging	2005	DBLP DOI BibTeX RDF
12	Manuel J. Gómez, Ramón Alonso-Allende, Florencio Pazos, Osvaldo Graña, David de Juan, Alfonso Valencia	Accessible Protein Interaction Data for Network Modeling. Structure of the Information and Available Repositories.	Trans. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF
12	Srinivasan Parthasarathy 0001, Wei Wang 0010, Mohammed Javeed Zaki	BIOKDD 2005 workshop report.	SIGKDD Explor.	2005	DBLP DOI BibTeX RDF
12	Ting Zhao, Meel Velliste, Michael V. Boland, Robert F. Murphy	Object Type Recognition for Automated Analysis of Protein Subcellular Location.	IEEE Trans. Image Process.	2005	DBLP DOI BibTeX RDF
12	Quan Wen 0001, Jean Gao, Akio Kosaka, Hidekazu Iwaki, Kate Luby-Phelps, Dorothy Mundy	A particle filter framework using optimal importance function for protein molecules tracking.	ICIP (1)	2005	DBLP DOI BibTeX RDF