Search results for "Biocomputing"

Hits ?▲	Authors	Title	Venue	Year	Link
41	Irena Spasic, Sophia Ananiadou	A Flexible Measure of Contextual Similarity for Biomedical Terms.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Matthew W. Dimmic, Shamil R. Sunyaev, Carlos D. Bustamante	Session Introduction: Inferring SNP Function Using Evolutionary, Structural and Computational Methods.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray	Session Introduction: Biomedical Ontologies.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Thomas Tang, Jinbo Xu, Ming Li 0001	Discovering Sequence-Structure Motifs from Protein Segments and Two Applications.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Brian Y. Chen, Viacheslav Fofanov, David M. Kristensen, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki	Algorithms for Structural Comparison and Statistical Analysis of 3D Protein Motifs.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Thomas E. Ferrin, Conrad C. Huang, Daniel M. Greenblatt, Doug Stryke, Kathleen M. Giacomini, John H. Morris	Enhancing Data Sharing in Collaborative Research Projects with DASH.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Scott C.-H. Pegg, Shoshana D. Brown, Sunil Ojha, Conrad C. Huang, Thomas E. Ferrin, Patricia C. Babbitt	Representing Structure-Function Relationships in Mechanistically Diverse Enzyme Superfamilies.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Philip V. Ogren, K. Bretonnel Cohen, Lawrence Hunter	Implications of Compositionality in the Gene Ontology for Its Curation and Usage .	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Andrew Leaver-Fay, Brian Kuhlman, Jack Snoeyink	An Adaptive Dynamic Programming Algorithm for the Side Chain Placement Problem.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Hiroshi Yamakawa, Koji Maruhashi, Yoshio Nakao, Mutsuyo Yamaguchi	Multi-Aspect Gene Relation Analysis.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Minh Ngoc Nguyen 0002, Jagath C. Rajapakse	Two-Stage Multi-Class Support Vector Machines to Protein Secondary Structure Prediction.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Patricia C. Babbitt, Philip E. Bourne, Sean D. Mooney	Introduction to Informatics Approaches in Structural Genomics: Modeling and Representation of Function from Macromolecular STructure.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Rohit Singh 0001, Bonnie Berger	ChainTweak: Sampling from the Neighbourhood of a Protein Conformation.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Byron Marshall, Hua Su, Daniel McDonald, Hsinchun Chen	Linking Ontological Resources Using Aggregatable Substance Identifiers to Organize Extracted Relations.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Mark Hoffman, C. Arnoldi, I. Chuang	The Clinical Bioinformatics Ontology: A Curated Semantic Network Utilizing RefSeq Information.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Boris Hayete, Jadwiga R. Bienkowska	GOTrees: Predicting GO Associations from Protein Domain Composition Using Decision Trees.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Allister Bernard, Alexander J. Hartemink	Informative Structure Priors: Joint Learning of Dynamic Regulatory Networks from Multiple Types of Data.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Xiang Li, Jie Liang	Computational Design of Combinatorial Peptide Library for Modulating Protein-Protein Interactions.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Liviu Badea, Doina Tilivea	Sparse Factorizations of Gene Expression Guided by Binding Data.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Yu Chen, Dong Xu	Genome-Scale Protein Function Prediction in Yeast Saccharomyces cerevisiae Through Integrating Multiple Sources of High-Throughput Data.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	E. Sirohi, Peggy L. Peissig	Study of Effect of Drug Lexicons on Medication Extraction from Electronic Medical Records.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Daniel Russel, Leonidas J. Guibas	Exploring Protein Folding Trajectories Using Geometric Spanners.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Jiang Gui, Hongzhe Li	Threshold Gradient Descent Method for Censored Data Regression with Applications in Pharmacogenomics.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Yusu Wang 0001, Pankaj K. Agarwal, P. Brown, Herbert Edelsbrunner, Johannes Rudolph	Coarse and Reliable Geometric Alignment for Protein Docking.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Michael N. Cantor, Indra Neil Sarkar, Olivier Bodenreider, Yves A. Lussier	GenesTrace: Phenomic Knowledge Discovery via Structured Terminology.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Sean Bechhofer, Robert D. Stevens, Phillip W. Lord	Ontology Driven Dynamic Linking of Biology Resources.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Brendan J. Frey, Quaid Morris, Wen Zhang, Naveed Mohammad, Timothy R. Hughes	GenRate: A Generative Model That Finds and Scores New Genes and Exons in Genomic Microarray Data.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Yuko Makita, Michiel J. L. de Hoon, Naotake Ogasawara, Satoru Miyano, Kenta Nakai	Bayesian Joint Prediction of Associated Transcription Factors in Bacillus subtilis.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Sorin Draghici, Purvesh Khatri, Yanhong Liu, Kitty J. Chase, Elizabeth A. Bode, David A. Kulesh, Leonard P. Wasieloski, David A. Norwood, Jaques Reifman	Identification of Genomic Signatures for the Design of Assays for the Detection and Monitoring of Anthrax Threats.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Alexander Tropsha, Herbert Edelsbrunner	Session Introduction: Biogeometry: Applications of Computational Geometry to Molecular Structure.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	L. Y. Yampolsky, Arlin Stoltzfus	Untangling the Effects of Codon Mutation and Amino Acid Exchangeability.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Thomas S. Anantharaman, Venkatesh Mysore, Bud Mishra	Fast and Cheap Genome Wide Haplotype Construction via Optical Mapping.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Luis Tari, Chitta Baral, P. Dasgupta	Understanding the Global Properties of Functionally-Related Gene Networks Using the Gene Ontology.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Igor B. Rogozin, B. A. Malyarchuk, Youri I. Pavlov, Luciano Milanesi	From Context-Dependence of Mutations to Molecular Mechanisms of Mutagenesis.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	John H. Gennari, Adam Silberfein, Jesse C. Wiley	Integrating Genomic Knowledge Sources Through an Anatomy Ontology.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Olivier Bodenreider, Marc Aubry, Anita Burgun	Non-Lexical Approaches to Identifying Associative Relations in the Gene Ontology.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein	Preface.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Zhiyong Lu, Lawrence Hunter	GO Molecular Function Terms Are Predictive of Subcellular Localization.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Rachel Karchin, Libusha Kelly, Andrej Sali	Improving Functional Annotation of Non-Synonomous SNPs with Information Theory.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Jean Peccoud, Kent Vander Velden	Parameterization of a Nonlinear Genotype to Phenotype Map Using Molecular Networks.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Marylyn D. Ritchie, Michelle Whirl Carrillo, Russell A. Wilke	Session Introduction: Computational Approaches for Pharmacogenomics.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Yan Karklin, Richard F. Meraz, Stephen R. Holbrook	Classification of Non-Coding RNA Using Graph Representations of Secondary Structure.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Hui Xiong 0001, Xiaofeng He, Chris H. Q. Ding, Ya Zhang 0002, Vipin Kumar 0001, Stephen R. Holbrook	Identification of Functional Modules in Protein Complexes via Hyperclique Pattern Discovery.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Tijl De Bie, Patrick Monsieurs, Kristof Engelen, Bart De Moor, Nello Cristianini, Kathleen Marchal	Discovering Transcriptional Modules from Motif, Chip-Chip and Microarray Data.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	David M. Reif, Scott M. Dudek, Christian M. Shaffer, Janey Wang, Jason H. Moore	Exploratory Visual Analysis of Pharmacogenomic Results.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Anthony A. Philippakis, Fangxue Sherry He, Martha L. Bulyk	ModuleFinder: A Tool for Computational Discovery of Cis Regulatory Modules.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Bobbie-Jo M. Webb-Robertson, Susan L. Havre, Deborah A. Payne	A Bayesian Framework for SNP Identification.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Sandra E. Orchard, Luisa Montecchi-Palazzi, Henning Hermjakob, Rolf Apweiler	The Use of Common Ontologies and Controlled Vocabularies to Enable Data Exchange and Deposition for Complex Proteomic Experiments.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
41	Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany A. Jung, Teri E. Klein (eds.)	Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Fang-Xiang Wu, Wen-Jun Zhang 0001, Anthony J. Kusalik	Modeling Gene Expression from Microarray Expression Data with State-Space Equations.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Naoki Nariai, SunYong Kim, Seiya Imoto, Satoru Miyano	Using Protein-Protein Interactions for Refining Gene Networks Estimated from Microarray Data by Bayesian Networks.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Sascha Ott, Seiya Imoto, Satoru Miyano	Finding Optimal Models for Small Gene Networks.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Diego di Bernardo, Timothy S. Gardner, James J. Collins	Robust Identification of Large Genetic Networks.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Alan M. Moses, Derek Y. Chiang, Michael B. Eisen	Phylogenetic Motif Detection by Expectation-Maximization on Evolutionary Mixtures.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein	Preface.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Paola Lecca, Corrado Priami, Carlo Laudanna, Gabriela Constantin	A Biospi Model of Lymphocyte-Endothelial Interactions in Inflamed Brain Venules.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Madhukar S. Dasika, Anshuman Gupta, Costas D. Maranas, Jeffrey D. Varner	A Mixed Integer Linear Programming (MILP) Framework for Inferring Time Delay in Gene Regulatory Networks.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Ananya Dubey, Seungwoo Hwang, Claudia Rangel, Carl Edward Rasmussen, Zoubin Ghahramani, David L. Wild	Clustering Protein Sequence and Structure Space with Infinite Gaussian Mixture Models.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	D. A. Kightley, Navin Chandra, Keith O. Elliston	Inferring Gene Regulatory Networks from Raw Data: A Molecular Epistemics Approach.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Philip E. Bourne, C. K. J. Allerston, Werner G. Krebs, Wilfred W. Li, Ilya N. Shindyalov, Adam Godzik, Iddo Friedberg, Tong Liu, David L. Wild, Seungwoo Hwang, Zoubin Ghahramani, Li Chen 0022, John D. Westbrook	The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Olivia Tuason, Lifeng Chen, Hongfang Liu, Judith A. Blake, Carol Friedman	Biological Nomenclatures: A Source of Lexical Knowledge and Ambiguity.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Hiroki Sakai, Osamu Maruyama	Extensive Search for Discriminative Features of Alternative Splicing.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Zhengyan Kan, John Castle, Jason M. Johnson, Nick Tsinoremas	Detection of Novel Splice Forms in Human and Mouse Using Cross-Species Approach.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Catherine S. Grasso, Barmak Modrek, Yi Xing, Christopher J. Lee	Genome-Wide Detection of Alternative Splicing in Expressed Sequences Using Partial Order Multiple Sequence Alignment Graphs.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Hui Wang 0007, U. Yang, Christopher J. Lee, John Blume	Session Introduction.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Daniel C. McShan, M. Updadhayaya, Imran Shah	Symbolic Inference of Xenobiotic Metabolism.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Eleazar Eskin, Eugene Agichtein	Combining Text Mining and Sequence Analysis to Discover Protein Functional Regions.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Markus E. Nebel	Identifying Good Predictions of RNA Secondary Structure.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	J. Stuart Aitken, Bonnie L. Webber, Jonathan Bard	Part-of Relations in Anatomy Ontologies: A Proposal for RDFS and OWL Formalisations.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Peter D. Karp, Suzanne M. Paley, Cynthia J. Krieger, Peifen Zhang	An Evidence Ontology for Use in Pathway/Genome Databases.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Yves A. Lussier, Jianrong Li	Terminological Mapping for High Throughput Comparative Biology of Phenotypes.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Francisco M. de la Vega, Kenneth K. Kidd, Andrew Collins 0001	Session Introduction.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Xinghua Lu, Milos Hauskrecht, Roger S. Day	Modeling Cellular Processes with Variational Bayesian Cooperative Vector Quantizer.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Michiel J. L. de Hoon, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Satoru Miyano	Predicting the Operon Structure of Bacillus subtilis Using Operon Length, Intergene Distance, and Gene Expression Information.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray	Session Introduction.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	M. P. Bass, E. R. Martin, E. R. Hauser	Pedigree Generation for Analysis of Genetic Linkage and Association.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Roded Sharan, Amir Ben-Dor, Zohar Yakhini	Multiplexing Schemes for Generic SNP Genotyping Assays.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Arnab Bhattacharya 0001, Tolga Can, Tamer Kahveci, Ambuj K. Singh, Yuan-Fang Wang	ProGreSS: Simultaneous Searching of Protein Databases by Sequence and Structure.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Sean D. Mooney, Philip E. Bourne, Patricia C. Babbitt	Session Introduction.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Amol Prakash, Mathieu Blanchette, Saurabh Sinha, Martin Tompa	Motif Discovery in Heterogeneous Sequence Data.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Lauri Eronen, Floris Geerts, Hannu Toivonen	A Markov Chain Approach to Reconstruction of Long Haplotypes.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Ken T. Takusagawa, David K. Gifford	Negative Information for Motif Discovery.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Songmao Zhang, Olivier Bodenreider	Investigating Implicit Knowledge in Ontologies with Application to the Anatomical Domain.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Carolyn L. Talcott, Steven Eker, Merrill Knapp, Patrick Lincoln, Keith Laderoute	Pathway Logic Modeling of Protein Functional Domains in Signal Transduction.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Haiquan Li, Jinyan Li 0001, Soon-Heng Tan, See-Kiong Ng	Discovery of Binding Motif Pairs from Protein Complex Structural Data and Protein Interaction Sequence Data.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Philip V. Ogren, K. Bretonnel Cohen, George K. Acquaah-Mensah, Jens Eberlein, Lawrence Hunter	The Compositional Structure of Gene Ontology Terms.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Sung K. Kim, Kui Zhang, Fengzhu Sun	A Comparison of Different Strategies for Computing Confidence Intervals of the Linkage Disequilibrium Measure.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Xiaofeng Zhu 0003, Shuanglin Zhang, Donghai Kan, Richard S. Cooper	Haplotype Block Definition and Its Application.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Georgios V. Gkoutos, Eain C. J. Green, Ann-Marie Mallon, John M. Hancock, Duncan Davidson	Building Mouse Phenotype Ontologies.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Melissa S. Cline, Ron Shigeta, Raymond Wheeler, Michael A. Siani-Rose, David Kulp, Ann E. Loraine	The Effects of Alternative Splicing on Transmembrane Proteins in the Mouse Genome.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Charles W. Sugnet, W. James Kent, Manuel Ares, David Haussler	Transcriptome and Genome Conservation of Alternative Splicing Events in Humans and Mice.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Trey Ideker, Erik K. Neumann, Vincent Schächter	Session Introduction.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Jun Huan, Wei Wang 0010, Anglina Washington, Jan F. Prins, Ruchir Shah, Alexander Tropsha	Accurate Classification of Protein Structural Families Using Coherent Subgraph Analysis.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Sun Jun Kang, Derek Gordon, A. M. Brown, Jürg Ott, Stephen J. Finch	Tradeoff Between No-Call Reduction in Genotyping Error Rate and Loss of Sample Size for Genetic Case/Control Association Studies.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Alexander J. Hartemink, Eran Segal	Session Introduction.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Alan L. Rector	Defaults, Context, and Knowledge: Alternatives for OWL-Indexed Knowledge Bases.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Shobha Potluri, Aly Azeem Khan, A. Kuzminykh, Janusz M. Bujnicki, Alan M. Friedman, Chris Bailey-Kellogg	Geometric Analysis of Cross-Linkability for Protein Fold Discrimination.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Youxing Qu, Jun-tao Guo, Victor Olman, Ying Xu 0001	Protein Fold Recognition Through Application of Residual Dipolar Coupling Data.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Christina L. Zheng, T. Murlidharan Nair, Michael Gribskov, Y. S. Kwon, Hai-Ri Li, Xiang-Dong Fu	A Database Designed to Computationally Aid an Experimental Approach to Alternative Splicing.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Arunkumar Chinnasamy, Wing-Kin Sung, Ankush Mittal	Protein Structure and Fold Prediction Using Tree-Augmented Bayesian Classifier.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF