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Results
Found 16824 publication records. Showing 16824 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Min Zeng, Yifan Wu, Yiming Li, Rui Yin, Chengqian Lu, Junwen Duan, Min Li 0007 |
LncLocFormer: a Transformer-based deep learning model for multi-label lncRNA subcellular localization prediction by using localization-specific attention mechanism.  |
Bioinform.  |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xuezhi Xie, Pedro A. Valiente, Philip M. Kim |
HelixGAN a deep-learning methodology for conditional de novo design of α-helix structures. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yiyan Yang, Xiaofang Jiang |
Evolink: a phylogenetic approach for rapid identification of genotype-phenotype associations in large-scale microbial multispecies data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Guowei Chen, Xubo Tang, Mang Shi, Yanni Sun |
VirBot: an RNA viral contig detector for metagenomic data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Lucas Robidou, Pierre Peterlongo |
fimpera: drastic improvement of Approximate Membership Query data-structures with counts. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Till Hartmann, Christopher Schröder 0002, Elias Kuthe, David Laehnemann, Johannes Köster |
Insane in the vembrane: filtering and transforming VCF/BCF files. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Samuel Martin, Martin Ayling, Livia Patrono, Mario Cáccamo, Pablo Murcia, Richard M. Leggett |
Capturing variation in metagenomic assembly graphs with MetaCortex. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yiming Wu, Bing Qian, Anqi Wang, Heng Dong, Enqiang Zhu, Baoshan Ma |
iLSGRN: inference of large-scale gene regulatory networks based on multi-model fusion. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jiansi Gao, Michael R. May, Bruce Rannala, Brian R. Moore |
PrioriTree: a utility for improving phylodynamic analyses in BEAST. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Romain Derelle, John Lees, Jody Phelan, Ajit Lalvani, Nimalan Arinaminpathy, Leonid Chindelevitch |
fastlin: an ultra-fast program for Mycobacterium tuberculosis complex lineage typing. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Can Chen, Scott T. Weiss, Yang-Yu Liu |
Graph convolutional network-based feature selection for high-dimensional and low-sample size data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Anders Pitman, Xiaomeng Huang, Gabor T. Marth, Yi Qiao |
quickBAM: a parallelized BAM file access API for high-throughput sequence analysis informatics. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Zuguang Gu, Daniel Hübschmann |
rGREAT: an R/bioconductor package for functional enrichment on genomic regions. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Limin Jiang, Hui Yu, Jijun Tang, Yan Guo |
CoMutDB: the landscape of somatic mutation co-occurrence in cancers. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Alexander Myronov, Giovanni Mazzocco, Paulina Król, Dariusz Plewczynski |
BERTrand - peptide:TCR binding prediction using Bidirectional Encoder Representations from Transformers augmented with random TCR pairing. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yueqi Sheng, Boaz Barak, Mor Nitzan |
Robust reconstruction of single-cell RNA-seq data with iterative gene weight updates. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Alexander J. Petri, Kristoffer Sahlin |
isONform: reference-free transcriptome reconstruction from Oxford Nanopore data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Shengquan Chen, Rongxiang Wang, Wenxin Long, Rui Jiang |
ASTER: accurately estimating the number of cell types in single-cell chromatin accessibility data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Cuifang Xu, Jiating Huang, Yongqiang Gao, Weixing Zhao, Yiqi Shen, Feihong Luo, Gang Yu, Feng Zhu, Yan Ni |
OBMeta: a comprehensive web server to analyze and validate gut microbial features and biomarkers for obesity-associated metabolic diseases. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Arya R. Massarat, Michael Lamkin, Ciara Reeve, Amy L. Williams, Matteo D'Antonio, Melissa Gymrek |
Haptools: a toolkit for admixture and haplotype analysis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Luis Francisco Hernández Sánchez, Bram Burger, Rodrigo Alexander Castro Campos, Stefan Johansson, Pål R. Njølstad, Harald Barsnes, Marc Vaudel |
Extending protein interaction networks using proteoforms and small molecules. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Christiana N. Fogg, Diane E. Kovats, Martin Vingron |
2023 Outstanding Contributions to ISCB Award: Shoba Ranganathan. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: DeepFold: enhancing protein structure prediction through optimized loss functions, improved template features, and re-optimized energy function. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Felix Teufel, Jan C. Refsgaard, Christian T. Madsen, Carsten Stahlhut, Mads Grønborg, Ole Winther, Dennis Madsen |
DeepPeptide predicts cleaved peptides in proteins using conditional random fields. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Limin Li, Yameng Zhao, Huiran Li, Shuqin Zhang |
BLTSA: pseudotime prediction for single cells by branched local tangent space alignment. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ellie E. Armstrong, Michael G. Campana |
RatesTools: a Nextflow pipeline for detecting de novo germline mutations in pedigree sequence data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Pingping Sun, Shijie Fan, Shaochuan Li, Yingwei Zhao, Chang Lu, Ka-Chun Wong, Xiangtao Li |
Automated exploitation of deep learning for cancer patient stratification across multiple types. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jinxian Wang, Jihong Guan, Shuigeng Zhou |
Molecular property prediction by contrastive learning with attention-guided positive sample selection. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Weiwen Wang, James Barbetti, Thomas Wong, Bryan Thornlow, Russell Corbett-Detig, Yatish Turakhia, Robert Lanfear, Bui Quang Minh |
DecentTree: scalable Neighbour-Joining for the genomic era. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Christopher Hill, Sanjarbek Hudaiberdiev, Ivan Ovcharenko |
ChromDL: a next-generation regulatory DNA classifier. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Tudor-Stefan Cotet, Andreas Agrafiotis, Victor Kreiner, Raphael Kuhn, Danielle Shlesinger, Marcos Manero-Carranza, Keywan Khodaverdi, Evgenios Kladis, Aurora Desideri Perea, Dylan Maassen-Veeters, Wiona Glänzer, Solène Massery, Lorenzo Guerci, Kai-Lin Hong, Jiami Han, Kostas Stiklioraitis, Vittoria Martinolli D'arcy, Raphael Dizerens, Samuel Kilchenmann, Lucas Stalder, Leon Nissen, Basil Vogelsanger, Stine Anzböck, Daria Laslo, Sophie Bakker, Melinda Kondorosy, Marco Venerito, Alejandro Sanz García, Isabelle Feller, Annette Oxenius, Sai T. Reddy, Alexander Yermanos |
ePlatypus: an ecosystem for computational analysis of immunogenomics data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Zi Hao Liu, João M. C. Teixeira, Oufan Zhang, Thomas E. Tsangaris, Jie Li, Claudiu C. Gradinaru, Teresa Head-Gordon, Julie D. Forman-Kay |
Local Disordered Region Sampling (LDRS) for ensemble modeling of proteins with experimentally undetermined or low confidence prediction segments. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Herui Liao, Jiayu Shang, Yanni Sun |
GDmicro: classifying host disease status with GCN and deep adaptation network based on the human gut microbiome data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Hyunjun Choi, Jay Moran, Nicholas Matsumoto, Miguel E. Hernandez, Jason H. Moore |
Aliro: an automated machine learning tool leveraging large language models. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Antonios Klonizakis, Christoforos Nikolaou, Thomas Graf |
SEGCOND predicts putative transcriptional condensate-associated genomic regions by integrating multi-omics data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Asia Mendelevich, Saumya Gupta, Aleksei Pakharev, Athanasios Teodosiadis, Andrey A. Mironov, Alexander A. Gimelbrant |
Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yichen Cheng, Yusen Xia, Xinlei Wang 0001 |
Bayesian multitask learning for medicine recommendation based on online patient reviews. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Hong Zhang 0038, Devan V. Mehrotra, Judong Shen |
AWOT and CWOT for genotype and genotype-by-treatment interaction joint analysis in pharmacogenetics GWAS. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Marie Macnee, Eduardo Pérez-Palma, Tobias Brünger, Chiara Klöckner, Konrad Platzer, Arthur Stefanski, Ludovica Montanucci, Allan Bayat, Maximilian Radtke, Ryan L. Collins, Michael E. Talkowski, Daniel Blankenberg, Rikke S. Møller, Johannes R. Lemke, Michael Nothnagel, Patrick May, Dennis Lal |
CNV-ClinViewer: enhancing the clinical interpretation of large copy-number variants online. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yanli Wang, Zhiye Guo, Jianlin Cheng |
Single-cell Hi-C data enhancement with deep residual and generative adversarial networks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Giulio Ermanno Pibiri, Yoshihiro Shibuya, Antoine Limasset |
Locality-preserving minimal perfect hashing of k-mers. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ryo Yamamoto, Zhiheng Liu, Mudra Choudhury, Xinshu Xiao |
dsRID: in silico identification of dsRNA regions using long-read RNA-seq data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Nicola Apollonio, Daniel Blankenberg, Fabio Cumbo, Paolo Giulio Franciosa, Daniele Santoni |
Evaluating homophily in networks via HONTO (HOmophily Network TOol): a case study of chromosomal interactions in human PPI networks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Diana F. Sousa, Francisco M. Couto |
K-RET: knowledgeable biomedical relation extraction system. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Daniel Chang, Vinod K. Gupta, Benjamin Hur, Kevin Cunningham, Jaeyun Sung |
GMWI-webtool: a user-friendly browser application for assessing health through metagenomic gut microbiome profiling. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yu Huo, Hongpei Li, Xiao Wang, Xiaochen Du, Peter S. Swain |
Nunchaku: optimally partitioning data into piece-wise contiguous segments. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Siddhant Grover, Alexey Markin, Tavis K. Anderson, Oliver Eulenstein |
Phylogenetic diversity statistics for all clades in a phylogeny. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Vincenzo Laveglia, Milana Bazayeva, Claudia Andreini, Antonio Rosato |
Hunting down zinc(II)-binding sites in proteins with distance matrices. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Zixuan Wang, Shuwen Xiong, Yun Yu, Jiliu Zhou, Yongqing Zhang |
HAMPLE: deciphering TF-DNA binding mechanism in different cellular environments by characterizing higher-order nucleotide dependency. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Masaki Tagashira |
ConsAlign: simultaneous RNA structural aligner based on rich transfer learning and thermodynamic ensemble model of alignment scoring. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Tong Pan, Chen Li 0021, Yue Bi, Zhikang Wang, Robin B. Gasser, Anthony W. Purcell, Tatsuya Akutsu, Geoffrey I. Webb, Seiya Imoto, Jiangning Song |
PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationships. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiaoliang Ren, Yanwen Shao, Yiwen Zhang, Ying Ni, Yu Bi, Runsheng Li |
Primerdiffer: a python command-line module for large-scale primer design in haplotype genotyping. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Pin Lyu, Yijie Zhai, Taibo Li, Jiang Qian |
CellAnn: a comprehensive, super-fast, and user-friendly single-cell annotation web server. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiao Chen, Alex Morehead, Jian Liu, Jianlin Cheng |
A gated graph transformer for protein complex structure quality assessment and its performance in CASP15. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Dhoha Abid, Michael R. Brent |
NetProphet 3: a machine learning framework for transcription factor network mapping and multi-omics integration. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jiawei Wu, Qingrui Liu, Min Li, Jiliang Xu, Chen Wang, Junyin Zhang, Minfeng Xiao, Yannan Bin, Junfeng Xia |
PhaGAA: an integrated web server platform for phage genome annotation and analysis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Divya Sharma, Wei Xu |
ReGeNNe: genetic pathway-based deep neural network using canonical correlation regularizer for disease prediction. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Wancen Mu, Eric S. Davis, Stuart Lee, Mikhail G. Dozmorov, Douglas H. Phanstiel, Michael I. Love |
bootRanges: flexible generation of null sets of genomic ranges for hypothesis testing. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Changqing Su, Yuhan Gao, You Zhou, Yaoqi Sun, Chenggang Yan 0001, Haibing Yin, Bo Xiong |
AutoDeconJ: a GPU-accelerated ImageJ plugin for 3D light-field deconvolution with optimal iteration numbers predicting. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Joshua Barnett 0003, Noori Sotudeh, Poorvi Rao, Jonah Silverman, Tamara Jafar, Liya Wang |
AtlasXplore: a web platform for visualizing and sharing spatial epigenome data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ángel Gálvez-Merchán, Kyung Hoi (Joseph) Min, Lior Pachter, A. Sina Booeshaghi |
Metadata retrieval from sequence databases with ffq. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Qi Wang 0038, Michael Nute, Todd J. Treangen |
Bakdrive: identifying a minimum set of bacterial species driving interactions across multiple microbial communities. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Susan L. Hoops, Dan Knights |
LMdist: Local Manifold distance accurately measures beta diversity in ecological gradients. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Monica T. Dayao, Alexandro Trevino, Honesty Kim, Matthew Ruffalo, H. Blaize D'angio, Ryan Preska, Umamaheswar Duvvuri, Aaron T. Mayer, Ziv Bar-Joseph |
Deriving spatial features from in situ proteomics imaging to enhance cancer survival analysis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Elena S. Dimitrova, Adam C. Knapp, Brandilyn Stigler, Michael Eugene Stillman |
Cyclone: open-source package for simulation and analysis of finite dynamical systems. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Szymon Grabowski, Wojciech Bieniecki |
copMEM2: robust and scalable maximum exact match finding. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xin He, Xianhui Huang, Yuexuan Long, Zhenping Liu, Xing Chang, Xianlong Zhang, Maojun Wang |
Tcbf: a novel user-friendly tool for pan-3D genome analysis of topologically associating domain in eukaryotic organisms. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Santiago Marco-Sola, Jordan M. Eizenga, Andrea Guarracino, Benedict Paten, Erik Garrison, Miquel Moretó |
Optimal gap-affine alignment in O(s) space. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Roshan Kulkarni, Yudi Zhang, Steven B. Cannon, Karin S. Dorman |
CAPG: comprehensive allopolyploid genotyper. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Luca Del Core, Danilo Pellin, Ernst C. Wit, Marco Grzegorczyk |
Scalable inference of cell differentiation networks in gene therapy clonal tracking studies of haematopoiesis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Hyunbin Kim, Milot Mirdita, Martin Steinegger |
Foldcomp: a library and format for compressing and indexing large protein structure sets. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Abin Abraham, Abigail L. Labella, Mary Lauren Benton, Antonis Rokas, John A. Capra |
GSEL: a fast, flexible python package for detecting signatures of diverse evolutionary forces on genomic regions. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Megan M. Shuey, William W. Stead, Ida Aka, April L. Barnado, Lisa Bastarache, Elly Brokamp, Meredith Campbell, Robert J. Carroll, Jeffrey A. Goldstein, Adam Lewis, Beth A. Malow, Jonathan D. Mosley, Travis Osterman, Dolly A Padovani-Claudio, Andrea Ramirez, Dan M. Roden, Bryce A Schuler, Edward Siew, Jennifer Sucre, Isaac Thomsen, Rory J. Tinker, Sara Van Driest, Colin Walsh, Jeremy L. Warner, Quinn Stanton Wells, Lee E. Wheless |
Next-generation phenotyping: introducing phecodeX for enhanced discovery research in medical phenomics. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Hamza Chegraoui, Vincent Guillemot, Amine Rebei, Arnaud Gloaguen, Jacques Grill, Cathy Philippe, Vincent Frouin |
Integrating multiomics and prior knowledge: a study of the Graphnet penalty impact. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Leon Weber, Fabio Barth, Leonie Lorenz, Fabian Konrath, Kirsten Huska, Jana Wolf, Ulf Leser |
PEDL+: protein-centered relation extraction from PubMed at your fingertip. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yitian Fang, Yi Jiang, Leyi Wei, Qin Ma, Zhixiang Ren, Qianmu Yuan, Dong-Qing Wei |
DeepProSite: structure-aware protein binding site prediction using ESMFold and pretrained language model. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Dongze He, Rob Patro |
simpleaf: a simple, flexible, and scalable framework for single-cell data processing using alevin-fry. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Joung Min Choi, Ming Ji, Layne T. Watson, Liqing Zhang |
DeepMicroGen: a generative adversarial network-based method for longitudinal microbiome data imputation. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jace Webster, Hung Mai, Amy Ly, Christopher Maher |
INTEGRATE-Circ and INTEGRATE-Vis: unbiased detection and visualization of fusion-derived circular RNA. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yuliia Varenyk, Thomas Spicher, Ivo L. Hofacker, Ronny Lorenz |
Modified RNAs and predictions with the ViennaRNA Package. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: PEMT: a patent enrichment tool for drug discovery. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Bing-Xue Du, Yahui Long, Xiaoli Li, Min Wu 0008, Jian-Yu Shi |
CMMS-GCL: cross-modality metabolic stability prediction with graph contrastive learning. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Ze-Gang Wei, Peng-Yu Bu, Xiao-Dan Zhang, Fei Liu, Yu Qian, Fang-Xiang Wu |
invMap: a sensitive mapping tool for long noisy reads with inversion structural variants. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Axel von Kamp, Steffen Klamt |
Balancing biomass reaction stoichiometry and measured fluxes in flux balance analysis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | |
Correction to: Online bias-aware disease module mining with ROBUST-Web. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Hanyi Yu, Fusheng Wang 0001, George Teodoro, Fan Chen, Xiaoyuan Guo, John Nickerson, Jun Kong |
Self-supervised semantic segmentation of retinal pigment epithelium cells in flatmount fluorescent microscopy images. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Louis Faure, Ruslan Soldatov, Peter V. Kharchenko, Igor Adameyko |
scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Kamil Kaminski, Jan Ludwiczak, Kamil Pawlicki, Vikram Alva, Stanislaw Dunin-Horkawicz |
pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Md. Abdullah-Al-Kamran Khan, Jian Wu, Yuhan Sun, Alexander D. Barrow, Anthony T. Papenfuss, Stefano Mangiola |
cellsig plug-in enhances CIBERSORTx signature selection for multidataset transcriptomes with sparse multilevel modelling. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ronan M. T. Fleming, Hulda S. Haraldsdóttir, Le Hoai Minh, Phan Tu Vuong, Thomas Hankemeier, Ines Thiele |
Cardinality optimization in constraint-based modelling: application to human metabolism. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Min Yang, Bo Qiu, Guo-You He, Jian-Yuan Zhou, Hao-Jie Yu, Yu-Ying Zhang, Yan-Shang Li, Tai-Song Li, Jin-Cheng Guo, Xue-Cang Li, Jian-Jun Xie |
eccDB: a comprehensive repository for eccDNA-mediated chromatin contacts in multi-species. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Nicholas A. G. Johnson, Liezel Tamon, Xin Liu, Aleksandr B. Sahakyan |
ROptimus: a parallel general-purpose adaptive optimization engine. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yang Hai, Jixiang Ma, Kaixin Yang, Yalu Wen |
Bayesian linear mixed model with multiple random effects for prediction analysis on high-dimensional multi-omics data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Théophile Sanchez, Erik Madison Bray, Pierre Jobic, Jérémy Guez, Anne-Catherine Letournel, Guillaume Charpiat, Jean Cury, Flora Jay |
dnadna: a deep learning framework for population genetics inference. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiaoyu Guan, Zhongnian Li, Yueying Zhou, Wei Shao 0005, Daoqiang Zhang |
Active learning for efficient analysis of high-throughput nanopore data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Duy T. Pham, Kenneth E. Westerman, Cong Pan, Ling Chen, Shylaja Srinivasan, Elvira Isganaitis, Mary Ellen Vajravelu, Fida Bacha, Steve Chernausek, Rose Gubitosi-Klug, Jasmin Divers, Catherine Pihoker, Santica M. Marcovina, Alisa K. Manning, Han Chen |
Re-analysis and meta-analysis of summary statistics from gene-environment interaction studies. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Jaime Martínez de Villarreal, Mark Kalisz, Gabriel Piedrafita, Osvaldo Graña-Castro, Dafni Chondronasiou, Manuel Serrano, Francisco X. Real |
Pseudoalignment tools as an efficient alternative to detect repeated transposable elements in scRNAseq data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xuehua Bi, Weiyang Liang, Qichang Zhao, Jianxin Wang 0001 |
SSLpheno: a self-supervised learning approach for gene-phenotype association prediction using protein-protein interactions and gene ontology data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Armin Rauschenberger, Zied Landoulsi, Mark A. van de Wiel, Enrico Glaab |
Penalized regression with multiple sources of prior effects. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: Multi-omic integration by machine learning (MIMaL). |
Bioinform. |
2023 |
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