Search results for "Peptides"

Hits ?▲	Authors	Title	Venue	Year	Link
15	Julien Rey, Patrick Deschavanne, Pierre Tufféry	BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes.	Database J. Biol. Databases Curation	2014	DBLP DOI BibTeX RDF
15	Julien Rey, Patrick Deschavanne, Pierre Tufféry	BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes.	Database J. Biol. Databases Curation	2014	DBLP DOI BibTeX RDF
15	Faiza Hanif Waghu, Lijin Gopi, Ram Shankar Barai, Pranay Ramteke, Bilal Nizami, Susan Idicula-Thomas	CAMP: Collection of sequences and structures of antimicrobial peptides.	Nucleic Acids Res.	2014	DBLP DOI BibTeX RDF
15	Abid Qureshi, Nishant Thakur, Himani Tandon, Manoj Kumar 0003	AVPdb: a database of experimentally validated antiviral peptides targeting medically important viruses.	Nucleic Acids Res.	2014	DBLP DOI BibTeX RDF
15	Ankur Gautam, Kumardeep Chaudhary, Sandeep Singh, Anshika Joshi, Priya Anand, Abhishek Tuknait, Deepika Mathur, Grish C. Varshney, Gajendra P. S. Raghava	Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides.	Nucleic Acids Res.	2014	DBLP DOI BibTeX RDF
15	A. Mary Thangakani, Sandeep Kumar, Raju Nagarajan, Devadasan Velmurugan, M. Michael Gromiha	GAP: towards almost 100 percent prediction for β-strand-mediated aggregating peptides with distinct morphologies.	Bioinform.	2014	DBLP DOI BibTeX RDF
15	Amir Toporik, Itamar Borukhov, Avihay Apatoff, Doron Gerber, Yossef Kliger	Computational identification of natural peptides based on analysis of molecular evolution.	Bioinform.	2014	DBLP DOI BibTeX RDF
15	Bo Wen, Shaohang Xu, Gloria M. Sheynkman, Qiang Feng, Liang Lin, Quanhui Wang, Xun Xu, Jun Wang 0004, Siqi Liu	sapFinder: an R/Bioconductor package for detection of variant peptides in shotgun proteomics experiments.	Bioinform.	2014	DBLP DOI BibTeX RDF
15	M. Sadman Sakib, Md. Rezaul Islam, A. K. M. Mahbub Hasan, Ahm H. M. Nurun Nabi	Prediction of Epitope-Based Peptides for the Utility of Vaccine Development from Fusion and Glycoprotein of Nipah Virus Using In Silico Approach.	Adv. Bioinformatics	2014	DBLP DOI BibTeX RDF
15	Urszula Jarocka, Róza Sawicka, Anna Góra-Sochacka, Agnieszka Sirko, Wlodzimierz Zagórski-Ostoja, Jerzy Radecki, Hanna Radecka	An Immunosensor Based on Antibody Binding Fragments Attached to Gold Nanoparticles for the Detection of Peptides Derived from Avian Influenza Hemagglutinin H5.	Sensors	2014	DBLP DOI BibTeX RDF
15	Joe DeBartolo, Mikko Taipale, Amy E. Keating	Genome-Wide Prediction and Validation of Peptides That Bind Human Prosurvival Bcl-2 Proteins.	PLoS Comput. Biol.	2014	DBLP DOI BibTeX RDF
15	James B. Smadbeck, Kiat Hwa Chan, George A. Khoury, Bo Xue 0006, Robert C. Robinson, Charlotte A. E. Hauser, Christodoulos A. Floudas	De Novo Design and Experimental Characterization of Ultrashort Self-Associating Peptides.	PLoS Comput. Biol.	2014	DBLP DOI BibTeX RDF
15	Wenli Huang, Guobing Yang, Xiaojun Zhao, Ze-Rong Li	Prediction of HLA-DRB1*0401 binding peptides using support vector machine.	Int. J. Data Min. Bioinform.	2014	DBLP DOI BibTeX RDF
15	Arun Gupta, Sharat Chandra, Tiratha Raj Singh	HLAB27Pred: SVM-based precise method for predicting HLA-B*2705 binding peptides in antigenic sequences.	Netw. Model. Anal. Health Informatics Bioinform.	2014	DBLP DOI BibTeX RDF
15	Yu-Jui Che, Huei-Wen Wu, Lein-Yu Hung, Hwan-You Chang, Kuan Wang, Gwo-Bin Lee	An integrated microfluidic system for screening of peptides specific to colon cancer cells and colon cancer stem cells using the phage display technology.	NEMS	2014	DBLP DOI BibTeX RDF
15	Soha Ahmed, Mengjie Zhang 0001, Lifeng Peng	Prediction of detectable peptides in MS data using genetic programming.	GECCO (Companion)	2014	DBLP DOI BibTeX RDF
15	Daniel Veltri, Uday Kamath, Amarda Shehu	A novel method to improve recognition of antimicrobial peptides through distal sequence-based features.	BIBM	2014	DBLP DOI BibTeX RDF
15	Didier Devaurs, Amarda Shehu, Thierry Siméon, Juan Cortés	Sampling-based methods for a full characterization of energy landscapes of small peptides.	BIBM	2014	DBLP DOI BibTeX RDF
15	Yassene Mohammed, Dominik Domanski, Angela M. Jackson, Derek Smith, André M. Deelder, Magnus Palmblad, Christoph H. Borchers	Automatic Peptides Selection for Targeted Proteomics.	IWBBIO	2014	DBLP BibTeX RDF
15	Liang Xu, Xiaojuan Wang, Shengsheng Shan, Xicheng Wang	Characterization of the polymorphic states of copper(II)-bound Aβ(1-16) peptides by computational simulations.	J. Comput. Chem.	2013	DBLP DOI BibTeX RDF
15	Mahesh R. Borkar, Raghuvir R. S. Pissurlenkar, Evans C. Coutinho	HomoSAR: Bridging comparative protein modeling with quantitative structural activity relationship to design new peptides.	J. Comput. Chem.	2013	DBLP DOI BibTeX RDF
15	Zhixiong Lin, Wilfred F. van Gunsteren	Refinement of the application of the GROMOS 54A7 force field to β-peptides.	J. Comput. Chem.	2013	DBLP DOI BibTeX RDF
15	Satoru G. Itoh, Hisashi Okumura	Hamiltonian replica-permutation method and its applications to an alanine dipeptide and amyloid-β(29-42) peptides.	J. Comput. Chem.	2013	DBLP DOI BibTeX RDF
15	Li Yan, Yuxian Yan, Hongqi Liu, Qi Lv	Stepwise identification of potent antimicrobial peptides from human genome.	Biosyst.	2013	DBLP DOI BibTeX RDF
15	Peng Zhou, Kevin A. T. Silverstein, Liangliang Gao, Jonathan D. Walton, Sumitha Nallu, Joseph Guhlin, Nevin D. Young	Detecting Small Plant Peptides Using SPADA (Small Peptide Alignment Discovery Application).	BMC Bioinform.	2013	DBLP DOI BibTeX RDF
15	A. Mary Thangakani, Sandeep Kumar, Devadasan Velmurugan, M. Michael Gromiha	Distinct position-specific sequence features of hexa-peptides that form amyloid-fibrils: application to discriminate between amyloid fibril and amorphous β-aggregate forming peptide sequences.	BMC Bioinform.	2013	DBLP DOI BibTeX RDF
15	Fei Luo 0004, Yangyang Gao, Yongqiong Zhu, Juan Liu 0007	Integrating peptides' sequence and energy of contact residues information improves prediction of peptide and HLA-I binding with unknown alleles.	BMC Bioinform.	2013	DBLP DOI BibTeX RDF
15	Cem Meydan, Hasan H. Otu, Osman Ugur Sezerman	Prediction of peptides binding to MHC class I and II alleles by temporal motif mining.	BMC Bioinform.	2013	DBLP DOI BibTeX RDF
15	Sathish Kumar Ramakrishnan, Marta Martin, Thierry Cloitre, Lucyna Firlej, Frédéric J. G. Cuisinier, Csilla Gergely	Insights on the Facet Specific Adsorption of Amino Acids and Peptides toward Platinum.	J. Chem. Inf. Model.	2013	DBLP DOI BibTeX RDF
15	Jun Zhao, Chao Zhao, Guizhao Liang, Mingzhen Zhang, Jie Zheng 0003	Engineering Antimicrobial Peptides with Improved Antimicrobial and Hemolytic Activities.	J. Chem. Inf. Model.	2013	DBLP DOI BibTeX RDF
15	Ibrahim H. Al-Lehyani, John M. A. Grime, Matthew Bano, Kim McKelvey, Michael P. Allen	Coarse-grained simulation of transmembrane peptides in the gel phase.	J. Comput. Phys.	2013	DBLP DOI BibTeX RDF
15	Wadim L. Matochko, Ratmir Derda	Error Analysis of Deep Sequencing of Phage Libraries: Peptides Censored in Sequencing.	Comput. Math. Methods Medicine	2013	DBLP DOI BibTeX RDF
15	Evelien Wynendaele, Antoon Bronselaer, Joachim Nielandt, Matthias D'Hondt, Sofie Stalmans, Nathalie Bracke, Frederick Verbeke, Christophe Van De Wiele, Guy De Tré, Bart De Spiegeleer	Quorumpeps database: chemical space, microbial origin and functionality of quorum sensing peptides.	Nucleic Acids Res.	2013	DBLP DOI BibTeX RDF
15	Auke J. van Heel, Anne de Jong, Manuel Montalbán-López, Jan Kok, Oscar P. Kuipers	BAGEL3: automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides.	Nucleic Acids Res.	2013	DBLP DOI BibTeX RDF
15	Thérèse A. Holton, Gianluca Pollastri, Denis C. Shields, Catherine Mooney	CPPpred: prediction of cell penetrating peptides.	Bioinform.	2013	DBLP DOI BibTeX RDF
15	Catherine Mooney, Niall J. Haslam, Thérèse A. Holton, Gianluca Pollastri, Denis C. Shields	PeptideLocator: prediction of bioactive peptides in protein sequences.	Bioinform.	2013	DBLP DOI BibTeX RDF
15	Valentina Indio, Pier Luigi Martelli, Castrense Savojardo, Piero Fariselli, Rita Casadio	The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields.	Bioinform.	2013	DBLP DOI BibTeX RDF
15	Chiquito J. Crasto, Chandrahas Narne, Mikako Kawai, Landon Wilson, Stephen Barnes	MRMPath and MRMutation, Facilitating Discovery of Mass Transitions for Proteotypic Peptides in Biological Pathways Using a Bioinformatics Approach.	Adv. Bioinformatics	2013	DBLP DOI BibTeX RDF
15	Guoqing Li, Di Wu, Shuning Wang, Jing Sun, Diansheng Xu, Zhi-Wei Cao	Similarity between segments in protein conformational epitopes and MHC II peptides.	Int. J. Comput. Biol. Drug Des.	2013	DBLP DOI BibTeX RDF
15	Giuseppe Maccari, Mariagrazia Di Luca, Riccardo Nifosí, Francesco Cardarelli, Giovanni Signore, Claudia Boccardi, Angelo Bifone	Antimicrobial Peptides Design by Evolutionary Multiobjective Optimization.	PLoS Comput. Biol.	2013	DBLP DOI BibTeX RDF
15	Christian P. Koch, Anna Maria Perna, Max Pillong, Nickolay K. Todoroff, Paul Wrede, Gerd Folkers, Jan A. Hiss, Gisbert Schneider	Scrutinizing MHC-I Binding Peptides and Their Limits of Variation.	PLoS Comput. Biol.	2013	DBLP DOI BibTeX RDF
15	James C. Robertson, Nate C. Hurley, Marcello Tortorici, Giuseppe Ciossani, Maria Teresa Borrello, Nadeem A. Vellore, A. Ganesan, Andrea Mattevi, Riccardo Baron	Expanding the Druggable Space of the LSD1/CoREST Epigenetic Target: New Potential Binding Regions for Drug-Like Molecules, Peptides, Protein Partners, and Chromatin.	PLoS Comput. Biol.	2013	DBLP DOI BibTeX RDF
15	Jorg J. A. Calis, Matt Maybeno, Jason A. Greenbaum, Daniela Weiskopf, Aruna D. De Silva, Alessandro Sette, Can Kesmir, Björn Peters	Properties of MHC Class I Presented Peptides That Enhance Immunogenicity.	PLoS Comput. Biol.	2013	DBLP DOI BibTeX RDF
15	Nevena Todorova, Adam J. Makarucha, Nicholas D. M. Hine, Arash A. Mostofi, Irene Yarovsky	Dimensionality of Carbon Nanomaterials Determines the Binding and Dynamics of Amyloidogenic Peptides: Multiscale Theoretical Simulations.	PLoS Comput. Biol.	2013	DBLP DOI BibTeX RDF
15	Chun Wu, Joan-Emma Shea	Structural Similarities and Differences between Amyloidogenic and Non-Amyloidogenic Islet Amyloid Polypeptide (IAPP) Sequences and Implications for the Dual Physiological and Pathological Activities of These Peptides.	PLoS Comput. Biol.	2013	DBLP DOI BibTeX RDF
15	Alexander Kos, Hans-Jürgen Himmler	Finding unusual peptides on the internet using plain three letter sequence codes.	J. Cheminformatics	2013	DBLP DOI BibTeX RDF
15	Andreas Truszkowski, Annamaria Fiethen, Hubert Kuhn, Achim Zielesny, Matthias Epple	Molecular simulations of peptides and proteins with Molecular Fragment Dynamics (MFD).	J. Cheminformatics	2013	DBLP DOI BibTeX RDF
15	Bahareh Honarparvar, Hendrik G. Kruger, Mahmoud E. S. Soliman, Glenn E. M. Maguire, Thavendran Govender	Molecular modelling studies of synthesized pentacyclo-undecane peptides as potential HIV-1 wild type C-SA protease inhibitors.	J. Cheminformatics	2013	DBLP DOI BibTeX RDF
15	Volkan Uslan, Huseyin Seker	Support vector-based Takagi-Sugeno fuzzy system for the prediction of binding affinity of peptides.	EMBC	2013	DBLP DOI BibTeX RDF
15	Elena G. Randou, Daniel Veltri, Amarda Shehu	Systematic analysis of global features and model building for recognition of antimicrobial peptides.	ICCABS	2013	DBLP DOI BibTeX RDF
15	Elena G. Randou, Daniel Veltri, Amarda Shehu	Binary Response Models for Recognition of Antimicrobial Peptides.	BCB	2013	DBLP DOI BibTeX RDF
15	Anna Malin	Adaptive Learning and Unsupervised Clustering of Immune Responses Using Microarray Random Sequence Peptides.		2013	RDF
15	Julia Meier	Design, Synthese und Analytik peptidischer CD4-Mimetika sowie Analyse ihrer Bindung an das HIV-Hüllprotein gp120 (Design, Synthesis, Analysis and Binding Assays of Peptides Mimicking the Binding Site of CD4 for HIV Envelope Protein gp120) (PDF / PS)		2013	RDF
15	Lin He 0002	Algorithms for Characterizing Peptides and Glycopeptides with Mass Spectrometry.		2013	RDF
15	Viviana Culmone, Michele Migliore	Progressive effect of beta amyloid peptides accumulation on CA1 pyramidal neurons: a model study suggesting possible treatments.	Frontiers Comput. Neurosci.	2012	DBLP DOI BibTeX RDF
15	Bruno A. C. Horta, Zhixiong Lin, Wei Huang, Sereina Riniker, Wilfred F. van Gunsteren, Philippe H. Hünenberger	Reoptimized interaction parameters for the peptide-backbone model compound N-methylacetamide in the GROMOS force field: Influence on the folding properties of two beta-peptides in methanol.	J. Comput. Chem.	2012	DBLP DOI BibTeX RDF
15	Olga Bezkorovaynaya, Alexander Lukyanov, Kurt Kremer, Christine Peter	Multiscale simulation of small peptides: Consistent conformational sampling in atomistic and coarse-grained models.	J. Comput. Chem.	2012	DBLP DOI BibTeX RDF
15	Shaini Joseph, Shreyas Karnik, Pravin Nilawe, Vaidyanathan K. Jayaraman, Susan Idicula-Thomas	ClassAMP: A Prediction Tool for Classification of Antimicrobial Peptides.	IEEE ACM Trans. Comput. Biol. Bioinform.	2012	DBLP DOI BibTeX RDF
15	Liang Xu, Ke Gao, Chunyu Bao, Xicheng Wang	Combining conformational sampling and selection to identify the binding mode of zinc-bound amyloid peptides with bifunctional molecules.	J. Comput. Aided Mol. Des.	2012	DBLP DOI BibTeX RDF
15	Ammar Abdo, Ségolène Caboche, Valérie Leclère, Philippe Jacques, Maude Pupin	A new fingerprint to predict nonribosomal peptides activity.	J. Comput. Aided Mol. Des.	2012	DBLP DOI BibTeX RDF
15	Rebecca F. Halperin, Phillip Stafford, Jack S. Emery, Krupa Navalkar, Stephen A. Johnston	GuiTope: an application for mapping random-sequence peptides to protein sequences.	BMC Bioinform.	2012	DBLP DOI BibTeX RDF
15	Claus Bendtsen	Prediction of human major histocompatibility complex class II binding peptides: A frequent case of publication bias?	Artif. Intell. Medicine	2012	DBLP DOI BibTeX RDF
15	Ju He, Guobing Yang, Hanbing Rao, Ze-Rong Li, Xianping Ding, Yu Zong Chen	Prediction of human major histocompatibility complex class II binding peptides by continuous kernel discrimination method.	Artif. Intell. Medicine	2012	DBLP DOI BibTeX RDF
15	Nédia Kamech, Damir Vukicevic, Ali Ladram, Christophe Piesse, Julie Vasseur, Viktor Bojovic, Juraj Simunic, Davor Juretic	Improving the Selectivity of Antimicrobial Peptides from Anuran Skin.	J. Chem. Inf. Model.	2012	DBLP DOI BibTeX RDF
15	Ankur Gautam, Harinder Singh, Atul Tyagi, Kumardeep Chaudhary, Rahul Kumar, Pallavi Kapoor, G. P. S. Raghava	CPPsite: a curated database of cell penetrating peptides.	Database J. Biol. Databases Curation	2012	DBLP DOI BibTeX RDF
15	Pierre Thévenet, Yimin Shen, Julien Maupetit, Frédéric Guyon, Philippe Derreumaux, Pierre Tufféry	PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides.	Nucleic Acids Res.	2012	DBLP DOI BibTeX RDF
15	Nishant Thakur, Abid Qureshi, Manoj Kumar 0003	AVPpred: collection and prediction of highly effective antiviral peptides.	Nucleic Acids Res.	2012	DBLP DOI BibTeX RDF
15	Mario Novkovic, Juraj Simunic, Viktor Bojovic, Alessandro Tossi, Davor Juretic	DADP: the database of anuran defense peptides.	Bioinform.	2012	DBLP DOI BibTeX RDF
15	Lida Zhang, Yuyi Huang, Zehong Zou, Ying He, Ximo Chen, Ailin Tao	SORTALLER: predicting allergens using substantially optimized algorithm on allergen family featured peptides.	Bioinform.	2012	DBLP DOI BibTeX RDF
15	Rolando P. Hong Enriquez, Trang N. Do	Interactions of iron-sulfur clusters with small peptides: Insights into early evolution.	Comput. Biol. Chem.	2012	DBLP DOI BibTeX RDF
15	Wenli Qin, Yizhou Li, Juan Li, Lezheng Yu, Di Wu, Runyu Jing, Xuemei Pu, Yanzhi Guo, Menglong Li	Predicting deleterious non-synonymous single nucleotide polymorphisms in signal peptides based on hybrid sequence attributes.	Comput. Biol. Chem.	2012	DBLP DOI BibTeX RDF
15	Yoshiyuki Takatsuji, Shinya Ikeno, Tetsuya Haruyama	Gold Nanoparticles Functionalized with Peptides for Specific Affinity Aggregation Assays of Estrogen Receptors and Their Agonists.	Sensors	2012	DBLP DOI BibTeX RDF
15	Takuya Watanabe 0003, Kengo Sato, Fumiko Itoh, Kohei Wakabayashi, Masayoshi Shichiri, Tsutomu Hirano	Endogenous Bioactive Peptides as Potential Biomarkers for Atherosclerotic Coronary Heart Disease.	Sensors	2012	DBLP DOI BibTeX RDF
15	Jorg J. A. Calis, Rob J. De Boer, Can Kesmir	Degenerate T-cell Recognition of Peptides on MHC Molecules Creates Large Holes in the T-cell Repertoire.	PLoS Comput. Biol.	2012	DBLP DOI BibTeX RDF
15	Iskra Staneva, Yongqi Huang, Zhirong Liu, Stefan Wallin	Binding of Two Intrinsically Disordered Peptides to a Multi-Specific Protein: A Combined Monte Carlo and Molecular Dynamics Study.	PLoS Comput. Biol.	2012	DBLP DOI BibTeX RDF
15	Banu Dost, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steve Briggs, Vineet Bafna	Accurate Mass Spectrometry Based Protein Quantification via Shared Peptides.	J. Comput. Biol.	2012	DBLP DOI BibTeX RDF
15	Carla Schmidt, Henning Urlaub	Absolute Quantification of Proteins Using Standard Peptides and Multiple Reaction Monitoring.	Quantitative Methods in Proteomics	2012	DBLP DOI BibTeX RDF
15	Tao Liu, Jiuyun Zhang, Tianyu Lei	Prediction of Rheumatoid Arthritis-Associated Antigen Peptides Using a Novel Mixed Algorithm.	ICICA (2)	2012	DBLP DOI BibTeX RDF
15	M. Michael Gromiha, A. Mary Thangakani, Sandeep Kumar, Devadasan Velmurugan	Sequence Analysis and Discrimination of Amyloid and Non-amyloid Peptides.	ICIC (3)	2012	DBLP DOI BibTeX RDF
15	Daniel Veltri, Amarda Shehu	Physico-chemical features for recognition of antimicrobial peptides.	BIBM Workshops	2012	DBLP DOI BibTeX RDF
15	Andrea Szabóová, Ondrej Kuzelka, Filip Zelezný	Prediction of antimicrobial activity of peptides using relational machine learning.	BIBM Workshops	2012	DBLP DOI BibTeX RDF
15	Hosein Mohimani, Sangtae Kim, Pavel A. Pevzner	MS-DPR: An Algorithm for Computing Statistical Significance of Spectral Identifications of Non-linear Peptides.	WABI	2012	DBLP DOI BibTeX RDF
15	Moshe Goldstein, Erick Fredj, R. Benny Gerber	A new hybrid algorithm for finding the lowest minima of potential surfaces: Approach and application to peptides.	J. Comput. Chem.	2011	DBLP DOI BibTeX RDF
15	Artem B. Mamonov, Xin Zhang 0011, Daniel M. Zuckerman	Rapid sampling of all-atom peptides using a library-based polymer-growth approach.	J. Comput. Chem.	2011	DBLP DOI BibTeX RDF
15	David Curcó, David Zanuy, Ruth Nussinov, Carlos Alemán	A simulation strategy for the atomistic modeling of flexible molecules covalently tethered to rigid surfaces: Application to peptides.	J. Comput. Chem.	2011	DBLP DOI BibTeX RDF
15	Andrew J. Bordner, Barry Zorman, Ruben Abagyan	Efficient molecular mechanics simulations of the folding, orientation, and assembly of peptides in lipid bilayers using an implicit atomic solvation model.	J. Comput. Aided Mol. Des.	2011	DBLP DOI BibTeX RDF
15	Victor M. Anisimov, Arturas Ziemys, Smitha Kizhake, Ziyan Yuan, Amarnath Natarajan, Claudio N. Cavasotto	Computational and experimental studies of the interaction between phospho-peptides and the C-terminal domain of BRCA1.	J. Comput. Aided Mol. Des.	2011	DBLP DOI BibTeX RDF
15	Alexey V. Nefedov, Rovshan G. Sadygov	A parallel method for enumerating amino acid compositions and masses of all theoretical peptides.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
15	Bernhard Knapp, Verena Giczi, Reiner Ribarics, Wolfgang Schreiner	PeptX: Using Genetic Algorithms to optimize peptides for MHC binding.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
15	Fergal J. Duffy, Mélanie Verniere, Marc Devocelle, Elise Bernard, Denis C. Shields, Anthony J. Chubb	CycloPs: Generating Virtual Libraries of Cyclized and Constrained Peptides Including Nonnatural Amino Acids.	J. Chem. Inf. Model.	2011	DBLP DOI BibTeX RDF
15	Andrei L. Lomize, Irina D. Pogozheva, Henry I. Mosberg	Anisotropic Solvent Model of the Lipid Bilayer. 2. Energetics of Insertion of Small Molecules, Peptides, and Proteins in Membranes.	J. Chem. Inf. Model.	2011	DBLP DOI BibTeX RDF
15	Luis Fernández Pacios, Leticia Tordesillas, Arantxa Palacín, Rosa Sánchez-Monge, Gabriel Salcedo, Araceli Díaz-Perales	LocaPep: Localization of Epitopes on Protein Surfaces Using Peptides from Phage Display Libraries.	J. Chem. Inf. Model.	2011	DBLP DOI BibTeX RDF
15	H. B. Rao, F. Zhu, G. B. Yang, Z. R. Li, Yu Zong Chen	Update of PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence.	Nucleic Acids Res.	2011	DBLP DOI BibTeX RDF
15	Tingjun Hou, Youyong Li, Wei Wang 0051	Prediction of peptides binding to the PKA RIIα subunit using a hierarchical strategy.	Bioinform.	2011	DBLP DOI BibTeX RDF
15	Kristin Kassler, Julia Meier, Jutta Eichler, Heinrich Sticht	Structural Basis for Species Selectivity in the HIV-1 gp120-CD4 Interaction: Restoring Affinity to gp120 in Murine CD4 Mimetic Peptides.	Adv. Bioinformatics	2011	DBLP DOI BibTeX RDF
15	Gábor Janzsó, Ferenc Bogár, Liza Hudoba, Botond Penke, Gábor Rákhely, Balázs Leitgeb	Exploring and characterizing the folding processes of Lys- and Arg-containing Ala-based peptides: A molecular dynamics study.	Comput. Biol. Chem.	2011	DBLP DOI BibTeX RDF
15	William S. Sanders, C. Ian Johnston, Susan M. Bridges, Shane C. Burgess, Kenneth O. Willeford	Prediction of Cell Penetrating Peptides by Support Vector Machines.	PLoS Comput. Biol.	2011	DBLP DOI BibTeX RDF
15	Tsutomu Osoda, Satoru Miyano	2D-Qsar for 450 types of amino acid induction peptides with a novel substructure pair descriptor having wider scope.	J. Cheminformatics	2011	DBLP DOI BibTeX RDF
15	Swapnil Bhatia, Yong J. Kil, Beatrix Ueberheide, Brian T. Chait, Lemmuel Lara Tayo, Lourdes J. Cruz, Bingwen Lu, John R. Yates III, Marshall W. Bern	Constrained De Novo Sequencing of Peptides with Application to Conotoxins.	RECOMB	2011	DBLP DOI BibTeX RDF
15	Sami Laroum, Béatrice Duval, Dominique Tessier, Jin-Kao Hao	Multi-Neighborhood Search for Discrimination of Signal Peptides and Transmembrane Segments.	EvoBio	2011	DBLP DOI BibTeX RDF