Search results for "RECOMB"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Serafim Batzoglou (eds.)	Research in Computational Molecular Biology, 13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings	RECOMB	2009	DBLP DOI BibTeX RDF
1	Mathias Möhl, Sebastian Will, Rolf Backofen	Lifting Prediction to Alignment of RNA Pseudoknots.	RECOMB	2009	DBLP DOI BibTeX RDF
1	Bonnie Kirkpatrick, Javier Rosa, Eran Halperin, Richard M. Karp	Haplotype Inference in Complex Pedigrees.	RECOMB	2009	DBLP DOI BibTeX RDF
1	Banu Dost, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steve Briggs, Vineet Bafna	Shared Peptides in Mass Spectrometry Based Protein Quantification.	RECOMB	2009	DBLP DOI BibTeX RDF	shared peptides, protein quantification, ITRAQ, optimization, linear programming, mass spectrometry
1	Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp	Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced Genomes.	RECOMB	2009	DBLP DOI BibTeX RDF
1	Benjamin J. Hescott, Mark D. M. Leiserson, Lenore Cowen, Donna K. Slonim	Evaluating Between-Pathway Models with Expression Data.	RECOMB	2009	DBLP DOI BibTeX RDF
1	Jian Peng 0001, Jinbo Xu	Boosting Protein Threading Accuracy.	RECOMB	2009	DBLP DOI BibTeX RDF	gradient tree boosting, nonlinear scoring function, conditional random fields, regression tree, protein threading
1	Wei Zheng 0009, Karl E. Griswold, Chris Bailey-Kellogg	Protein Fragment Swapping: A Method for Asymmetric, Selective Site-Directed Recombination.	RECOMB	2009	DBLP DOI BibTeX RDF
1	Yong Lu, Roni Rosenfeld, Gerard J. Nau, Ziv Bar-Joseph	Cross Species Expression Analysis of Innate Immune Response.	RECOMB	2009	DBLP DOI BibTeX RDF
1	Xiang Zhang 0001, Feng Pan 0001, Yuying Xie, Fei Zou, Wei Wang 0010	COE: A General Approach for Efficient Genome-Wide Two-Locus Epistasis Test in Disease Association Study.	RECOMB	2009	DBLP DOI BibTeX RDF
1	Saket Navlakha, James Robert White, Niranjan Nagarajan, Mihai Pop, Carl Kingsford	Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information.	RECOMB	2009	DBLP DOI BibTeX RDF	Hierarchical Tree Decompositions, Variation of Information, OTUs, Clustering, Protein Interaction Networks, Metagenomics
1	Osvaldo Zagordi, Lukas Geyrhofer, Volker Roth 0001, Niko Beerenwinkel	Deep Sequencing of a Genetically Heterogeneous Sample: Local Haplotype Reconstruction and Read Error Correction.	RECOMB	2009	DBLP DOI BibTeX RDF
1	Hyun Min Kang, Noah Zaitlen, Buhm Han, Eleazar Eskin	An Adaptive and Memory Efficient Algorithm for Genotype Imputation.	RECOMB	2009	DBLP DOI BibTeX RDF
1	Snehit Prabhu, Itsik Pe'er	Overlapping Pools for High Throughput Targeted Resequencing.	RECOMB	2009	DBLP DOI BibTeX RDF
1	Eun Yong Kang, Ilya Shpitser, Chun Ye, Eleazar Eskin	Detecting the Presence and Absence of Causal Relationships between Expression of Yeast Genes with Very Few Samples.	RECOMB	2009	DBLP DOI BibTeX RDF
1	Feng Zhao, Jian Peng 0001, Joe DeBartolo, Karl F. Freed, Tobin R. Sosnick, Jinbo Xu	A Probabilistic Graphical Model for Ab Initio Folding.	RECOMB	2009	DBLP DOI BibTeX RDF	ab initio folding, conditional random fields (CRFs), directional statistics, fragment assembly, protein structure prediction, lattice model
1	Oliver Stegle, Katherine J. Denby, David L. Wild, Zoubin Ghahramani, Karsten M. Borgwardt	A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series.	RECOMB	2009	DBLP DOI BibTeX RDF
1	Veli Mäkinen, Gonzalo Navarro 0001, Jouni Sirén, Niko Välimäki	Storage and Retrieval of Individual Genomes.	RECOMB	2009	DBLP DOI BibTeX RDF	full-text indexing, compressed data structures, suffix tree, Comparative genomics
1	Sourav Chatterji, Ichitaro Yamazaki, Zhaojun Bai, Jonathan A. Eisen	CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads.	RECOMB	2008	DBLP DOI BibTeX RDF	weighted PCA, DNA composition metrics, Genome Signatures, Feature Extraction, Metagenomics, Normalized Cut, Binning
1	Bin Ma 0002, Xiaoming Sun 0001	More Efficient Algorithms for Closest String and Substring Problems.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Oliver Stegle, Anitha Kannan, Richard Durbin, John M. Winn	Accounting for Non-genetic Factors Improves the Power of eQTL Studies.	RECOMB	2008	DBLP DOI BibTeX RDF
1	J. Gordon Burleigh, Mukul S. Bansal, André Wehe, Oliver Eulenstein	Locating Multiple Gene Duplications through Reconciled Trees.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Suzanne Cory	BCL-2: From Translocation to Therapy.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Sang Yup Lee	Systems Metabolic Engineering.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Yu Lin 0001, Yantao Qiao, Shiwei Sun, Chungong Yu, Gongjin Dong, Dongbo Bu	A Fragmentation Event Model for Peptide Identification by Mass Spectrometry.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Edison T. Liu	Transcriptional Regulation and Cancer Genomics.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Sivan Bercovici, Dan Geiger, Liran Shlush, Karl Skorecki, Alan A. Templeton	Panel Construction for Mapping in Admixed Populations Via Expected Mutual Information.	RECOMB	2008	DBLP DOI BibTeX RDF
1	John Hawkins, Timothy L. Bailey	The Statistical Power of Phylogenetic Motif Models.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Delbert Dueck, Brendan J. Frey, Nebojsa Jojic, Vladimir Jojic, Guri Giaever, Andrew Emili, Gabe Musso, Robert Hegele	Constructing Treatment Portfolios Using Affinity Propagation.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Jing Zhang 0012, Xin Gao 0001, Jinbo Xu, Ming Li 0001	Rapid and Accurate Protein Side Chain Prediction with Local Backbone Information.	RECOMB	2008	DBLP DOI BibTeX RDF	side chain prediction, local backbone features, multiclass Support Vector Machines
1	Denis Smirnov, Vivian G. Cheung	Disruption of a Transcriptional Regulatory Pathway Contributes to Phenotypes in Carriers of Ataxia Telangiectasia.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng, Haixu Tang	A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Jason Flannick, Antal F. Novak, Chuong B. Do, Balaji S. Srinivasan, Serafim Batzoglou	Automatic Parameter Learning for Multiple Network Alignment.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Christophe Dessimoz, Daniel Margadant, Gaston H. Gonnet	DLIGHT - Lateral Gene Transfer Detection Using Pairwise Evolutionary Distances in a Statistical Framework.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Tien-ho Lin, Pradipta Ray, Geir Kjetil Sandve, Selen Uguroglu, Eric P. Xing	BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Michael Baym, Chris Bakal, Norbert Perrimon, Bonnie Berger	High-Resolution Modeling of Cellular Signaling Networks.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Fuhui Long, Hanchuan Peng, Xiao Liu, Stuart K. Kim, Gene Myers	Automatic Recognition of Cells (ARC) for 3D Images of C. elegans.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Andrei N. Lupas	At the Origin of Life: How Did Folded Proteins Evolve?	RECOMB	2008	DBLP DOI BibTeX RDF
1	Michael R. Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael S. Waterman, Xianghong Jasmine Zhou	An Integrative Network Approach to Map the Transcriptome to the Phenome.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Sriram Sankararaman, Gad Kimmel, Eran Halperin, Michael I. Jordan	On the Inference of Ancestries in Admixed Populations.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Rune B. Lyngsø, Yun S. Song, Jotun Hein	Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Martin Vingron, Limsoon Wong (eds.)	Research in Computational Molecular Biology, 12th Annual International Conference, RECOMB 2008, Singapore, March 30 - April 2, 2008. Proceedings	RECOMB	2008	DBLP DOI BibTeX RDF
1	Temple F. Smith	Computational Biology: Its Challenges Past, Present, and Future.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Eleazar Eskin	Increasing Power in Association Studies by Using Linkage Disequilibrium Structure and Molecular Function as Prior Information.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Ritendra Datta, Marshall W. Bern	Spectrum Fusion: Using Multiple Mass Spectra for De Novo Peptide Sequencing.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Yanxin Shi, Itamar Simon, Tom M. Mitchell, Ziv Bar-Joseph	A Combined Expression-Interaction Model for Inferring the Temporal Activity of Transcription Factors.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Igor Ulitsky, Richard M. Karp, Ron Shamir	Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Raluca Gordân, Leelavati Narlikar, Alexander J. Hartemink	A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Caroline C. Friedel, Jan Krumsiek, Ralf Zimmer	Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Paul Medvedev, Michael Brudno	Ab Initio Whole Genome Shotgun Assembly with Mated Short Reads.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Yu Zhang 0002, Giltae Song, Tomás Vinar, Eric D. Green, Adam C. Siepel, Webb Miller	Reconstructing the Evolutionary History of Complex Human Gene Clusters.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Wei Zheng 0009, Alan M. Friedman, Chris Bailey-Kellogg	Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Mustafa Kirac, Gultekin Özsoyoglu	Protein Function Prediction Based on Patterns in Biological Networks.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Howard Cedar	Orchestration of DNA Methylation.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie, Ferry Hagen, Teun Boekhout	Constructing Level-2 Phylogenetic Networks from Triplets.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Andreas Sundquist, Eugene Fratkin, Chuong B. Do, Serafim Batzoglou	Effects of Genetic Divergence in Identifying Ancestral Origin Using HAPAA.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Nuno Bandeira, Julio Ng, Dario Meluzzi, Roger G. Linington, Pieter C. Dorrestein, Pavel A. Pevzner	De Novo Sequencing of Nonribosomal Peptides.	RECOMB	2008	DBLP DOI BibTeX RDF	Cyclic Peptides, De novo Algorithm, Sequencing
1	Michael Sammeth, Gabriel Valiente, Roderic Guigó	Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs.	RECOMB	2008	DBLP DOI BibTeX RDF	exon-intron structure, splicing variation, alternative splicing event, expressed sequence tags, high-throughput sequencing, parallel sequencing, galled network, directed acyclic graph, bubble, blob
1	Maxim Kalaev, Vineet Bafna, Roded Sharan	Fast and Accurate Alignment of Multiple Protein Networks.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Sebastian Böcker, Katharina Jahn 0001, Julia Mixtacki, Jens Stoye	Computation of Median Gene Clusters.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Marshall W. Bern, David Goldberg 0001	Improved Ranking Functions for Protein and Modification-Site Identifications.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Yanxin Shi, Fan Guo 0006, Wei Wu 0023, Eric P. Xing	GIMscan: A New Statistical Method for Analyzing Whole-Genome Array CGH Data.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Eilon Sharon, Eran Segal	A Feature-Based Approach to Modeling Protein-DNA Interactions.	RECOMB	2007	DBLP DOI BibTeX RDF	DNA sequence motifs, motif finder, probabilistic graphical models, Markov networks, transcription factor binding sites
1	Hetunandan Kamisetty, Eric P. Xing, Christopher James Langmead	Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation.	RECOMB	2007	DBLP DOI BibTeX RDF	Decoy Detection, Protein Structure, Probabilistic Graphical Models, Free Energy
1	Chen Yanover, Ora Schueler-Furman, Yair Weiss	Minimizing and Learning Energy Functions for Side-Chain Prediction.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt 0001, Knut Reinert	A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Joël R. Pradines, Vlado Dancík, Alan Ruttenberg, Victor Farutin	Connectedness Profiles in Protein Networks for the Analysis of Gene Expression Data.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Banu Dost, Tomer Shlomi, Nitin Gupta 0002, Eytan Ruppin, Vineet Bafna, Roded Sharan	QNet: A Tool for Querying Protein Interaction Networks.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Antonio Piccolboni	Multivariate Segmentation in the Analysis of Transcription Tiling Array Data.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Terence P. Speed, Haiyan Huang (eds.)	Research in Computational Molecular Biology, 11th Annual International Conference, RECOMB 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings	RECOMB	2007	DBLP DOI BibTeX RDF
1	Michal Ozery-Flato, Ron Shamir	Rearrangements in Genomes with Centromeres Part I: Translocations.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Yuval Inbar, Dina Schneidman-Duhovny, Oranit Dror, Ruth Nussinov, Haim J. Wolfson	Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules.	RECOMB	2007	DBLP DOI BibTeX RDF	Computer-Aided Drug Design (CADD), Rational Drug Discovery, 3D Molecular Similarity, 3D Molecular Superposition
1	Cyrus L. Harmon, Parvez Ahammad, Ann Hammonds, Richard Weiszmann, Susan E. Celniker, Shankar Sastry 0001, Gerald M. Rubin	Comparative Analysis of Spatial Patterns of Gene Expression in Drosophila melanogaster Imaginal Discs.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Amir Ben-Dor, Doron Lipson, Anya Tsalenko, Mark Reimers, Lars O. Baumbusch, Michael T. Barrett, John N. Weinstein, Anne-Lise Børresen-Dale, Zohar Yakhini	Framework for Identifying Common Aberrations in DNA Copy Number Data.	RECOMB	2007	DBLP DOI BibTeX RDF	CGH, common aberrations, NCI-60, breast cancer, cancer, microarray data analysis
1	Leelavati Narlikar, Raluca Gordân, Alexander J. Hartemink	Nucleosome Occupancy Information Improves de novo Motif Discovery.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Wenyi Wang 0001, Benilton S. Carvalho, Nate Miller, Jonathan Pevsner, Aravinda Chakravarti, Rafael A. Irizarry	Estimating Genome-Wide Copy Number Using Allele Specific Mixture Models.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Noah Zaitlen, Manuel Reyes-Gomez, David Heckerman, Nebojsa Jojic	Shift-Invariant Adaptive Double Threading: Learning MHC II - Peptide Binding.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Anshul Nigham, David Hsu	Protein Conformational Flexibility Analysis with Noisy Data.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Ydo Wexler, Dan Geiger	Variational Upper Bounds for Probabilistic Phylogenetic Models.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Yue Lu, Sing-Hoi Sze	Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Allister Bernard, David S. Vaughn, Alexander J. Hartemink	Reconstructing the Topology of Protein Complexes.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Abhishek Garg, Ioannis Xenarios, Luis Mendoza, Giovanni De Micheli	An Efficient Method for Dynamic Analysis of Gene Regulatory Networks and in silico Gene Perturbation Experiments.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Daniel H. Huson, Tobias H. Klöpper	Beyond Galled Trees - Decomposition and Computation of Galled Networks.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Srinath Sridhar 0001, Satish Rao, Eran Halperin	An Efficient and Accurate Graph-Based Approach to Detect Population Substructure.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Anitha Kannan, Andrew Emili, Brendan J. Frey	A Bayesian Model That Links Microarray mRNA Measurements to Mass Spectrometry Protein Measurements.	RECOMB	2007	DBLP DOI BibTeX RDF
1	T. M. Murali 0001, Corban G. Rivera	Network Legos: Building Blocks of Cellular Wiring Diagrams.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Chun-Nam John Yu, Thorsten Joachims, Ron Elber, Jaroslaw Pillardy	Support Vector Training of Protein Alignment Models.	RECOMB	2007	DBLP DOI BibTeX RDF	Machine learning, Protein structure prediction, Pairwise sequence alignment
1	Wah-Heng Lee, Wing-Kin Sung	RB-Finder: An Improved Distance-Based Sliding Window Method to Detect Recombination Breakpoints.	RECOMB	2007	DBLP DOI BibTeX RDF	Recombination detection, sliding window, phylogeny, genotyping
1	Anthony A. Philippakis, Aaron M. Qureshi, Michael F. Berger, Martha L. Bulyk	Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments.	RECOMB	2007	DBLP DOI BibTeX RDF	de Bruijn sequences, protein binding microarrays, linear feedback shift registers, motif, transcription factor
1	Xinyu Tang, Shawna L. Thomas, Lydia Tapia, Nancy M. Amato	Tools for Simulating and Analyzing RNA Folding Kinetics.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Erik Corona, Benjamin J. Raphael, Eleazar Eskin	Identification of Deletion Polymorphisms from Haplotypes.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Aaron A. Klammer, Xianhua Yi, Michael J. MacCoss, William Stafford Noble	Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions.	RECOMB	2007	DBLP DOI BibTeX RDF	peptide identification, retention time, chromatography, machine learning, support vector regression, proteomics, Mass spectrometry
1	Rohit Singh 0001, Jinbo Xu, Bonnie Berger	Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Joshua A. Grochow, Manolis Kellis	Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Hiroyuki Kuwahara, Chris J. Myers	Production-Passage-Time Approximation: A New Approximation Method to Accelerate the Simulation Process of Enzymatic Reactions.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Yufeng Wu	Association Mapping of Complex Diseases with Ancestral Recombination Graphs: Models and Efficient Algorithms.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein, André Wehe	Heuristics for the Gene-Duplication Problem: A Theta ( n ) Speed-Up for the Local Search.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Sean O'Rourke, Noah Zaitlen, Nebojsa Jojic, Eleazar Eskin	Reconstructing the Phylogeny of Mobile Elements.	RECOMB	2007	DBLP DOI BibTeX RDF
1	David Haussler	Ultraconserved Elements, Living Fossil Transposons, and Rapid Bursts of Change: Reconstructing the Uneven Evolutionary History of the Human Genome.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Ydo Wexler, Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson	A Study of Accessible Motifs and RNA Folding Complexity.	RECOMB	2006	DBLP DOI BibTeX RDF

Publications at "RECOMB"( http://dblp.L3S.de/Venues/RECOMB )