Search results for "WABI"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Minmei Hou, Piotr Berman, Louxin Zhang, Webb Miller	Controlling Size When Aligning Multiple Genomic Sequences with Duplications.	WABI	2006	DBLP DOI BibTeX RDF
1	Eun-Jong Hong, Tomás Lozano-Pérez	Protein Side-Chain Placement Through MAP Estimation and Problem-Size Reduction.	WABI	2006	DBLP DOI BibTeX RDF
1	Marta Luksza, Boguslaw Kluge, Jerzy Ostrowski, Jakub Karczmarski, Anna Gambin	Efficient Model-Based Clustering for LC-MS Data.	WABI	2006	DBLP DOI BibTeX RDF
1	Laxmi Parida	Gapped Permutation Patterns for Comparative Genomics.	WABI	2006	DBLP DOI BibTeX RDF	permutation patterns, whole genome analysis, evolutionary analysis, data mining, clusters, patterns, Pattern discovery, comparative genomics, motifs, labeled trees
1	Marco Terzer, Jörg Stelling	Accelerating the Computation of Elementary Modes Using Pattern Trees.	WABI	2006	DBLP DOI BibTeX RDF
1	Lusheng Wang 0001, Yu Lin 0001, Xiaowen Liu	Approximation Algorithms for Bi-clustering Problems.	WABI	2006	DBLP DOI BibTeX RDF
1	Dandan Song, Zhidong Deng	A Fuzzy Dynamic Programming Approach to Predict RNA Secondary Structure.	WABI	2006	DBLP DOI BibTeX RDF
1	Christian Blum 0001, Mateu Yábar Vallès	New Constructive Heuristics for DNA Sequencing by Hybridization.	WABI	2006	DBLP DOI BibTeX RDF
1	Barbara R. Holland, Glenn Conner, Katharina T. Huber, Vincent Moulton	Imputing Supertrees and Supernetworks from Quartets.	WABI	2006	DBLP DOI BibTeX RDF
1	Aaron E. Darling, Todd J. Treangen, Louxin Zhang, Carla Kuiken, Xavier Messeguer, Nicole T. Perna	Procrastination Leads to Efficient Filtration for Local Multiple Alignment.	WABI	2006	DBLP DOI BibTeX RDF
1	Augusto F. Vellozo, Carlos E. R. Alves, Alair Pereira do Lago	Alignment with Non-overlapping Inversions in O(n3)-Time.	WABI	2006	DBLP DOI BibTeX RDF
1	Paul A. Jenkins, Rune B. Lyngsø, Jotun Hein	How Many Transcripts Does It Take to Reconstruct the Splice Graph?	WABI	2006	DBLP DOI BibTeX RDF
1	István Miklós, Timothy Brooks Paige, Péter Ligeti	Efficient Sampling of Transpositions and Inverted Transpositions for Bayesian MCMC.	WABI	2006	DBLP DOI BibTeX RDF
1	Jieping Ye, Ivaylo Ilinkin, Ravi Janardan, Adam Isom	Multiple Structure Alignment and Consensus Identification for Proteins.	WABI	2006	DBLP DOI BibTeX RDF
1	Lukas Burger, Erik van Nimwegen	A Bayesian Algorithm for Reconstructing Two-Component Signaling Networks.	WABI	2006	DBLP DOI BibTeX RDF
1	Yinglei Song, Chunmei Liu, Russell L. Malmberg, Liming Cai	Phylogenetic Network Inferences Through Efficient Haplotyping.	WABI	2006	DBLP DOI BibTeX RDF
1	Dumitru Brinza, Alexander Zelikovsky	Combinatorial Methods for Disease Association Search and Susceptibility Prediction.	WABI	2006	DBLP DOI BibTeX RDF
1	Geir Kjetil Sandve, Magnar Nedland, Øyvind Bø Syrstad, Lars Andreas Eidsheim, Osman Abul, Finn Drabløs	Accelerating Motif Discovery: Motif Matching on Parallel Hardware.	WABI	2006	DBLP DOI BibTeX RDF
1	Hongmei Zhu, Jiaxin Wang, Zehong Yang, Yixu Song	A Method to Design Standard HMMs with Desired Length Distribution for Biological Sequence Analysis.	WABI	2006	DBLP DOI BibTeX RDF
1	Jens Gramm, Tzvika Hartman, Till Nierhoff, Roded Sharan, Till Tantau	On the Complexity of SNP Block Partitioning Under the Perfect Phylogeny Model.	WABI	2006	DBLP DOI BibTeX RDF
1	Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter	Flux-Based vs. Topology-Based Similarity of Metabolic Genes.	WABI	2006	DBLP DOI BibTeX RDF
1	Bethany Man-Yee Chan, Joseph Wun-Tat Chan, Francis Y. L. Chin, Stanley P. Y. Fung, Ming-Yang Kao	Linear-Time Haplotype Inference on Pedigrees Without Recombinations.	WABI	2006	DBLP DOI BibTeX RDF
1	Philipp Bucher, Bernard M. E. Moret (eds.)	Algorithms in Bioinformatics, 6th International Workshop, WABI 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings	WABI	2006	DBLP DOI BibTeX RDF
1	Shuai Cheng Li 0001, Ming Li 0001	On the Complexity of the Crossing Contact Map Pattern Matching Problem.	WABI	2006	DBLP DOI BibTeX RDF
1	Sérgio A. de Carvalho, Sven Rahmann	Improving the Layout of Oligonucleotide Microarrays: Pivot Partitioning.	WABI	2006	DBLP DOI BibTeX RDF
1	Jeff M. Phillips, Johannes Rudolph, Pankaj K. Agarwal	Segmenting Motifs in Protein-Protein Interface Surfaces.	WABI	2006	DBLP DOI BibTeX RDF
1	Warwick Tucker, Vincent Moulton	Reconstructing Metabolic Networks Using Interval Analysis.	WABI	2005	DBLP DOI BibTeX RDF
1	Pankaj K. Agarwal, Yonatan Bilu, Rachel Kolodny	Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons.	WABI	2005	DBLP DOI BibTeX RDF
1	Shlomo Moran, Satish Rao, Sagi Snir	Using Semi-definite Programming to Enhance Supertree Resolvability.	WABI	2005	DBLP DOI BibTeX RDF
1	Gang Wu, Jia-Huai You, Guohui Lin	A Lookahead Branch-and-Bound Algorithm for the Maximum Quartet Consistency Problem.	WABI	2005	DBLP DOI BibTeX RDF
1	Rita Casadio, Gene Myers (eds.)	Algorithms in Bioinformatics, 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings	WABI	2005	DBLP DOI BibTeX RDF
1	Eran Eyal, Dan Halperin	Improved Maintenance of Molecular Surfaces Using Dynamic Graph Connectivity.	WABI	2005	DBLP DOI BibTeX RDF
1	Anthony Labarre	A New Tight Upper Bound on the Transposition Distance.	WABI	2005	DBLP DOI BibTeX RDF
1	Laurent Bréhélin	Clustering Gene Expression Series with Prior Knowledge.	WABI	2005	DBLP DOI BibTeX RDF
1	Andrew Leaver-Fay, Brian Kuhlman, Jack Snoeyink	Rotamer-Pair Energy Calculations Using a Trie Data Structure.	WABI	2005	DBLP DOI BibTeX RDF
1	Daniel Dalevi, Devdatt P. Dubhashi	The Peres-Shields Order Estimator for Fixed and Variable Length Markov Models with Applications to DNA Sequence Similarity.	WABI	2005	DBLP DOI BibTeX RDF
1	Isaac Elias, Tzvika Hartman	A 1.375-Approximation Algorithm for Sorting by Transpositions.	WABI	2005	DBLP DOI BibTeX RDF
1	Baharak Rastegari, Anne Condon	Linear Time Algorithm for Parsing RNA Secondary Structure.	WABI	2005	DBLP DOI BibTeX RDF
1	Vincent Lacroix, Cristina G. Fernandes, Marie-France Sagot	Reaction Motifs in Metabolic Networks.	WABI	2005	DBLP DOI BibTeX RDF
1	Nora Speer, Christian Spieth, Andreas Zell	Spectral Clustering Gene Ontology Terms to Group Genes by Function.	WABI	2005	DBLP DOI BibTeX RDF
1	Chris Christiansen, Thomas Mailund, Christian N. S. Pedersen, Martin Randers	Computing the Quartet Distance Between Trees of Arbitrary Degree.	WABI	2005	DBLP DOI BibTeX RDF
1	Rune B. Lyngsø, Yun S. Song, Jotun Hein	Minimum Recombination Histories by Branch and Bound.	WABI	2005	DBLP DOI BibTeX RDF
1	Pasi Rastas, Mikko Koivisto, Heikki Mannila, Esko Ukkonen	A Hidden Markov Technique for Haplotype Reconstruction.	WABI	2005	DBLP DOI BibTeX RDF
1	Sèverine Bérard, Anne Bergeron, Cédric Chauve, Christophe Paul	Perfect Sorting by Reversals Is Not Always Difficult.	WABI	2005	DBLP DOI BibTeX RDF
1	Tamir Tuller, Efrat Oron, Erez Makavy, Daniel A. Chamovitz, Benny Chor	Time-Window Analysis of Developmental Gene Expression Data with Multiple Genetic Backgrounds.	WABI	2005	DBLP DOI BibTeX RDF
1	Ganeshkumar Ganapathy, Barbara Goodson, Robert K. Jansen, Vijaya Ramachandran, Tandy J. Warnow	Pattern Identification in Biogeography.	WABI	2005	DBLP DOI BibTeX RDF
1	Zeshan Peng, H. F. Ting	An Efficient Reduction from Constrained to Unconstrained Maximum Agreement Subtree.	WABI	2005	DBLP DOI BibTeX RDF
1	Yun S. Song, Yufeng Wu, Dan Gusfield	Algorithms for Imperfect Phylogeny Haplotyping (IPPH) with a Single Homoplasy or Recombination Event.	WABI	2005	DBLP DOI BibTeX RDF
1	Sebastian Wernicke 0001	A Faster Algorithm for Detecting Network Motifs.	WABI	2005	DBLP DOI BibTeX RDF
1	Sara C. Madeira, Arlindo L. Oliveira	A Linear Time Biclustering Algorithm for Time Series Gene Expression Data.	WABI	2005	DBLP DOI BibTeX RDF
1	Henry C. M. Leung, Francis Y. L. Chin	Generalized Planted (l, d)-Motif Problem with Negative Set.	WABI	2005	DBLP DOI BibTeX RDF
1	Keren Lasker, Oranit Dror, Ruth Nussinov, Haim J. Wolfson	Discovery of Protein Substructures in EM Maps.	WABI	2005	DBLP DOI BibTeX RDF	intermediate resolution cryo EM maps, 3D alignment of secondary structures, macromolecular assemblies, Structural bioinformatics
1	Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai	Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment.	WABI	2005	DBLP DOI BibTeX RDF
1	Gregory Kucherov, Laurent Noé, Mikhail A. Roytberg	A Unifying Framework for Seed Sensitivity and Its Application to Subset Seeds.	WABI	2005	DBLP DOI BibTeX RDF
1	Akshay Vashist, Casimir A. Kulikowski, Ilya B. Muchnik	Ortholog Clustering on a Multipartite Graph.	WABI	2005	DBLP DOI BibTeX RDF
1	Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson	Dynamic De-Novo Prediction of microRNAs Associated with Cell Conditions: A Search Pruned by Expression.	WABI	2005	DBLP DOI BibTeX RDF
1	Philippe Veber, Nicola Yanev, Rumen Andonov, Vincent Poirriez	Optimal Protein Threading by Cost-Splitting.	WABI	2005	DBLP DOI BibTeX RDF
1	Robert S. Boyer, Warren A. Hunt Jr., Serita M. Nelesen	A Compressed Format for Collections of Phylogenetic Trees and Improved Consensus Performance.	WABI	2005	DBLP DOI BibTeX RDF
1	Markus Bauer 0001, Gunnar W. Klau, Knut Reinert	Multiple Structural RNA Alignment with Lagrangian Relaxation.	WABI	2005	DBLP DOI BibTeX RDF
1	Rudi Cilibrasi, Leo van Iersel, Steven Kelk, John Tromp	On the Complexity of Several Haplotyping Problems.	WABI	2005	DBLP DOI BibTeX RDF
1	Alexander Kister	The Main Structural Regularities of the Sandwich Proteins.	WABI	2005	DBLP DOI BibTeX RDF
1	Michael Sammeth, Thomas Weniger, Dag Harmsen, Jens Stoye	Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI).	WABI	2005	DBLP DOI BibTeX RDF
1	Daniel G. Brown 0001, Ian M. Harrower	A New Integer Programming Formulation for the Pure Parsimony Problem in Haplotype Analysis.	WABI	2004	DBLP DOI BibTeX RDF
1	Inge Jonassen, Junhyong Kim (eds.)	Algorithms in Bioinformatics, 4th International Workshop, WABI 2004, Bergen, Norway, September 17-21, 2004, Proceedings	WABI	2004	DBLP DOI BibTeX RDF
1	Shunsuke Inenaga, Teemu Kivioja, Veli Mäkinen	Finding Missing Patterns.	WABI	2004	DBLP DOI BibTeX RDF
1	Daniel H. Huson, Tobias Dezulian, Tobias H. Klöpper, Mike A. Steel	Phylogenetic Super-networks from Partial Trees.	WABI	2004	DBLP DOI BibTeX RDF	partial trees, networks, closure operations, phylogeny, Molecular evolution
1	Hideo Bannai, Heikki Hyyrö, Ayumi Shinohara, Masayuki Takeda, Kenta Nakai, Satoru Miyano	Finding Optimal Pairs of Patterns.	WABI	2004	DBLP DOI BibTeX RDF
1	Stanislav Angelov, Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim, Li-San Wang	Genome Identification and Classification by Short Oligo Arrays.	WABI	2004	DBLP DOI BibTeX RDF
1	Tanya Y. Berger-Wolf	Online Consensus and Agreement of Phylogenetic Trees.	WABI	2004	DBLP DOI BibTeX RDF
1	Julien Allali, Marie-France Sagot	Novel Tree Edit Operations for RNA Secondary Structure Comparison.	WABI	2004	DBLP DOI BibTeX RDF	edit operation, distance, secondary structure, RNA, tree comparison
1	Tzvika Hartman, Roded Sharan	A 1.5-Approximation Algorithm for Sorting by Transpositions and Transreversals.	WABI	2004	DBLP DOI BibTeX RDF
1	Daniel G. Brown 0001, Alexander K. Hudek	New Algorithms for Multiple DNA Sequence Alignment.	WABI	2004	DBLP DOI BibTeX RDF
1	Behshad Behzadi, Jean-Marc Steyaert	The Minisatellite Transformation Problem Revisited: A Run Length Encoded Approach.	WABI	2004	DBLP DOI BibTeX RDF
1	Brona Brejová, Daniel G. Brown 0001, Tomás Vinar	The Most Probable Labeling Problem in HMMs and Its Application to Bioinformatics.	WABI	2004	DBLP DOI BibTeX RDF
1	Alberto Apostolico, Cinzia Pizzi	Monotone Scoring of Patterns with Mismatches: (Extended Abstract).	WABI	2004	DBLP DOI BibTeX RDF
1	Daniel G. Brown 0001	Multiple Vector Seeds for Protein Alignment.	WABI	2004	DBLP DOI BibTeX RDF
1	Lev Soinov, Alexander Kanapin, Misha Kapushesky	Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation.	WABI	2004	DBLP DOI BibTeX RDF
1	Alexandra Shulman-Peleg, Shira Mintz, Ruth Nussinov, Haim J. Wolfson	Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations.	WABI	2004	DBLP DOI BibTeX RDF
1	Vicky Choi, Pankaj K. Agarwal, Herbert Edelsbrunner, Johannes Rudolph	Local Search Heuristic for Rigid Protein Docking.	WABI	2004	DBLP DOI BibTeX RDF
1	Morris Michael, Christoph Dieterich, Jens Stoye	Suboptimal Local Alignments Across Multiple Scoring Schemes.	WABI	2004	DBLP DOI BibTeX RDF
1	Joel V. Earnest-DeYoung, Emmanuelle Lerat, Bernard M. E. Moret	Reversing Gene Erosion - Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data.	WABI	2004	DBLP DOI BibTeX RDF
1	Maciej Liskiewicz, Hemant J. Purohit, Dhananjay V. Raje	Relation of Residues in the Variable Region of 16S rDNA Sequences and Their Relevance to Genus-Specificity.	WABI	2004	DBLP DOI BibTeX RDF
1	Mukund Sundararajan, Michael Brudno, Kerrin S. Small, Arend Sidow, Serafim Batzoglou	Chaining Algorithms for Alignment of Draft Sequence.	WABI	2004	DBLP DOI BibTeX RDF
1	Jens Gramm	A Polynomial-Time Algorithm for the Matching of Crossing Contact-Map Patterns.	WABI	2004	DBLP DOI BibTeX RDF
1	Stefan Balev	Solving the Protein Threading Problem by Lagrangian Relaxation.	WABI	2004	DBLP DOI BibTeX RDF	sequence-structure alignment, Lagrangian relaxation and duality, dynamic programming, integer programming, protein structure prediction, protein threading, subgradient optimization
1	Yao-Ting Huang, Kui Zhang, Ting Chen 0006, Kun-Mao Chao	Approximation Algorithms for the Selection of Robust Tag SNPs.	WABI	2004	DBLP DOI BibTeX RDF	approximation algorithm, missing data, SNP, haplotype block
1	Denis Bertrand, Olivier Gascuel	Topological Rearrangements and Local Search Method for Tandem Duplication Trees.	WABI	2004	DBLP DOI BibTeX RDF
1	Doron Lipson, Amir Ben-Dor, Elinor Dehan, Zohar Yakhini	Joint Analysis of DNA Copy Numbers and Gene Expression Levels.	WABI	2004	DBLP DOI BibTeX RDF
1	Miklós Csürös	Algorithms for Finding Maximal-Scoring Segment Sets (Extended Abstract).	WABI	2004	DBLP DOI BibTeX RDF
1	Stanislav Angelov, Sanjeev Khanna, Li Li, Fernando Pereira	ATDD: An Algorithmic Tool for Domain Discovery in Protein Sequences.	WABI	2004	DBLP DOI BibTeX RDF
1	Jingwu He, Alexander Zelikovsky	Linear Reduction for Haplotype Inference.	WABI	2004	DBLP DOI BibTeX RDF	linear independence, Haplotype inference, perfect phylogeny
1	Anne Bergeron, Mathieu Blanchette, Annie Chateau, Cédric Chauve	Reconstructing Ancestral Gene Orders Using Conserved Intervals.	WABI	2004	DBLP DOI BibTeX RDF
1	Benny Chor, Tamir Tuller	Adding Hidden Nodes to Gene Networks (Extended Abstract).	WABI	2004	DBLP DOI BibTeX RDF	network expansion, Bayesian networks, compression, maximum likelihood, minimum description length, EM, gene network
1	Uri Keich, Niranjan Nagarajan	A Faster Reliable Algorithm to Estimate the p-Value of the Multinomial llr Statistic.	WABI	2004	DBLP DOI BibTeX RDF
1	Alessandro Panconesi, Mauro Sozio	Fast Hare: A Fast Heuristic for Single Individual SNP Haplotype Reconstruction.	WABI	2004	DBLP DOI BibTeX RDF
1	Manikandan Narayanan, Richard M. Karp	Gapped Local Similarity Search with Provable Guarantees.	WABI	2004	DBLP DOI BibTeX RDF
1	Guoliang Li 0002, Tze-Yun Leong, Louxin Zhang	Translation Initiation Sites Prediction with Mixture Gaussian Models.	WABI	2004	DBLP DOI BibTeX RDF
1	Martin Figeac, Jean-Stéphane Varré	Sorting by Reversals with Common Intervals.	WABI	2004	DBLP DOI BibTeX RDF
1	Sing-Hoi Sze, Songjian Lu, Jianer Chen	Integrating Sample-Driven and Pattern-Driven Approaches in Motif Finding.	WABI	2004	DBLP DOI BibTeX RDF
1	Nathan Edwards, Ross Lippert	Sequence Database Compression for Peptide Identification from Tandem Mass Spectra.	WABI	2004	DBLP DOI BibTeX RDF

Publications at "WABI"( http://dblp.L3S.de/Venues/WABI )