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Venues (Conferences, Journals, ...)
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GrowBag graphs for keyword ? (Num. hits/coverage)
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The graphs summarize 2639 occurrences of 1565 keywords
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Results
Found 8097 publication records. Showing 8086 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
18 | M. D. Derk |
Towards a simpler method of operational semantics for language definition. |
ACM SIGPLAN Notices |
2005 |
DBLP DOI BibTeX RDF |
operational semantics, binding, BNF |
18 | Gaby Hayon, Moshe Abeles, Daniel Lehmann 0001 |
A Model for Representing the Dynamics of a System of Synfire Chains. |
J. Comput. Neurosci. |
2005 |
DBLP DOI BibTeX RDF |
binding-mechanism, neural-networks, compositionality, synfire-chains |
18 | Gerardo Canfora, Piero Corte, Antonio De Nigro, Debora Desideri, Massimiliano Di Penta, Raffaele Esposito, Amedeo Falanga, Gloria Renna, Rita Scognamiglio, Francesco Torelli, Maria Luisa Villani, Paolo Zampognaro |
The C-Cube framework: developing autonomic applications through web services. |
ACM SIGSOFT Softw. Eng. Notes |
2005 |
DBLP DOI BibTeX RDF |
automatic service discovery, automatic service negotiation, run-time binding, service replanning, service-oriented systems |
18 | Jules White, Boris Kolpackov, Balachandran Natarajan, Douglas C. Schmidt |
Reducing application code complexity with vocabulary-specific XML language bindings. |
ACM Southeast Regional Conference (2) |
2005 |
DBLP DOI BibTeX RDF |
W3C XML schema, vocabulary-specific language binding, XML, C++, DOM, SAX |
18 | Oliver Bringmann 0001, Wolfgang Rosenstiel, Axel Siebenborn |
Conflict analysis in multiprocess synthesis for optimized system integration. |
CODES+ISSS |
2005 |
DBLP DOI BibTeX RDF |
scheduling, systems-on-chip, system level design, concurrent systems, binding, behavioral synthesis |
18 | Ralf Lämmel, Erik Meijer 0001 |
Mappings Make Data Processing Go 'Round. |
GTTSE |
2005 |
DBLP DOI BibTeX RDF |
XML data binding, Object-XML mapping, Cross-paradigm impedance mismatch, Mapping, Software evolution, Data modeling, Data processing, Data access, Loose coupling, Object-relational mapping |
18 | Hridesh Rajan, Kevin J. Sullivan |
Classpects: unifying aspect- and object-oriented language design. |
ICSE |
2005 |
DBLP DOI BibTeX RDF |
classpect, join point-method binding, aspect-oriented |
18 | Niels H. Christensen, Robert Glück |
Offline partial evaluation can be as accurate as online partial evaluation. |
ACM Trans. Program. Lang. Syst. |
2004 |
DBLP DOI BibTeX RDF |
offline partial evaluation, online partial evaluation, generalization, metacomputation, program specialization, constant propagation, Binding-time analysis |
18 | Kenichi Asai |
Offline partial evaluation for shift and reset. |
PEPM |
2004 |
DBLP DOI BibTeX RDF |
CPS transformation, binding-time analysis (BTA), offline partial evaluation, continuation-passing style (CPS), logical relations, delimited continuations |
18 | Eleazar Eskin |
From profiles to patterns and back again: a branch and bound algorithm for finding near optimal motif profiles. |
RECOMB |
2004 |
DBLP DOI BibTeX RDF |
patterns, profiles, transcription factor binding sites, motif-finding |
18 | Xiaoyue Zhao, Haiyan Huang, Terence P. Speed |
Finding short DNA motifs using permuted markov models. |
RECOMB |
2004 |
DBLP DOI BibTeX RDF |
Jeffreys mixture, maximal dependence decomposition, permuted variable length Markov models, weight matrix models, model selection, transcription factor binding sites, splice sites |
18 | Debatosh Debnath, Tsutomu Sasao |
Efficient computation of canonical form for Boolean matching in large libraries. |
ASP-DAC |
2004 |
DBLP DOI BibTeX RDF |
cell-library binding, Logic synthesis, technology mapping, canonical form, Boolean matching |
18 | Wang Xuan, Zheng Li, Yang Fang |
An Implementation of Learning Objects Management System. |
ICWL |
2004 |
DBLP DOI BibTeX RDF |
XML binding, eLearning standards, XML-native database, metadata, learning object, eLearning, web-based learning, learning technology, Learning Object Metadata, LOM, learning resource |
18 | Mark R. Shinwell, Andrew M. Pitts, Murdoch Gabbay |
FreshML: programming with binders made simple. |
ICFP |
2003 |
DBLP DOI BibTeX RDF |
alpha-conversion, metaprogramming, variable binding |
18 | Alexander J. Hartemink, David K. Gifford, Tommi S. Jaakkola, Richard A. Young |
Bayesian Methods for Elucidating Genetic Regulatory Networks. |
IEEE Intell. Syst. |
2002 |
DBLP DOI BibTeX RDF |
Affymetrix GeneChip, annotated Bayesian network, annotated graphical model, computational functional genomics, gene expression array, genomic binding location data, genomic expression data, annotation, model validation, genetic regulatory network |
18 | Rowan Davies, Frank Pfenning |
A modal analysis of staged computation. |
J. ACM |
2001 |
DBLP DOI BibTeX RDF |
binding times, staged computation, run-time code generation |
18 | Peter C. R. Lane, James Brinton Henderson |
Incremental Syntactic Parsing of Natural Language Corpora with Simple Synchrony Networks. |
IEEE Trans. Knowl. Data Eng. |
2001 |
DBLP DOI BibTeX RDF |
simple synchrony networks, temporal synchrony variable binding, natural language processing, syntactic parsing, Connectionist networks |
18 | Matthieu Martel, Marc Gengler |
Partial Evaluation of Concurrent Programs. |
Euro-Par |
2001 |
DBLP DOI BibTeX RDF |
Partial Evaluation, Control Flow Analysis, Concurrent Languages, Binding-time Analysis |
18 | Steve Lawrence, C. Lee Giles, Sandiway Fong |
Natural Language Grammatical Inference with Recurrent Neural Networks. |
IEEE Trans. Knowl. Data Eng. |
2000 |
DBLP DOI BibTeX RDF |
government-and-binding theory, principles-and-parameters framework, automata extraction, natural language processing, simulated annealing, Recurrent neural networks, grammatical inference, gradient descent |
18 | Keith H. Bennett, Paul J. Layzell 0001, David Budgen, Pearl Brereton, Linda A. Macaulay, Malcolm Munro |
Service-based software: the future for flexible software. |
APSEC |
2000 |
DBLP DOI BibTeX RDF |
service-based software, flexible software, software functionality, demand-centric view, open marketplace, long-term strategic view, software engineering innovation, demand-side model, component binding, rapidly changing business needs, software engineering, user centred design, future, software industry, time-to-market, DP industry, computer software, technological forecasting, service architecture |
18 | Michael Ströbel |
A Framework for Electronic Negotiations Based on Adjusted-Winner Mediation. |
DEXA Workshops |
2000 |
DBLP DOI BibTeX RDF |
adjusted-winner mediation, procedural framework, electronic market mediation service, adjusted-winner procedure, fair division, mutually beneficial agreements, negotiating agents, electronic market setting, binding offers, mirroring utility functions, mediation service, matchmaking facility, negotiation processes, market agents, negotiation support systems, electronic negotiations |
18 | Yoshihiko Ebihara, H. Ushine, Hongbing Chen, Shigetomo Kimura |
Analysis on Responsiveness and Input Traffic Regulation in Heterogeneous Information Systems. |
DEXA Workshops |
2000 |
DBLP DOI BibTeX RDF |
input traffic regulation, heterogeneous information systems, hierarchical protocol structures, multi-layered protocol, maximum input traffic, end-to-end responsiveness, binding method, distributed databases, mean response time |
18 | Joachim Biskup, Ulrich Flegel |
Transaction-Based Pseudonyms in Audit Data for Privacy Respecting Intrusion Detection. |
Recent Advances in Intrusion Detection |
2000 |
DBLP DOI BibTeX RDF |
audit analysis, purpose binding, privacy, intrusion detection, anonymity, secret sharing, pseudonymity |
18 | Luong T. Nguyen, Liping Zhao 0001, Bill Appelbe |
A Set Approach to Role Modeling. |
TOOLS (37) |
2000 |
DBLP DOI BibTeX RDF |
set approach, role modeling techniques, role description, role binding, role constraints, set inclusion, role specialisation, role compositions, part role, set notation, dynamic description, class/role relationships, class/role structures, Object-Z-like notation, system obligations, Petri net transitions, objects/role instances, system operations, formal specification, formal method, Petri nets, object-oriented programming, object-oriented methods, set theory, EMS, graphic notations, dynamic aspects, set operations, set intersection, formal notation, set union, set unions, set difference |
18 | Wei Mingliang, Qian Yu, Mao Bing, Xie Li |
Protocol Mapping Model for Distributed Multimedia Systems. |
TOOLS (36) |
2000 |
DBLP DOI BibTeX RDF |
protocol mapping, protocol binding, active networks, distributed multimedia system |
18 | Kyumyung Choi, Steven P. Levitan |
A flexible datapath allocation method for architectural synthesis. |
ACM Trans. Design Autom. Electr. Syst. |
1999 |
DBLP DOI BibTeX RDF |
allocation and binding, high-level synthesis |
18 | Flemming Nielson, Hanne Riis Nielson |
Type and Effect Systems. |
Correct System Design |
1999 |
DBLP DOI BibTeX RDF |
Polymorphic type systems, effect annotations, subeffecting and subtyping, type inference algorithms, syntactic soundness and completeness, Analyses for control flow, binding times, region structure and communication structure, side effects, semantic correctness |
18 | Gautier Koscielny, Salah Sadou |
Dynamic Reuse of Services in Distributed Systems. |
TOOLS (29) |
1999 |
DBLP DOI BibTeX RDF |
dynamic reuse, type conformance, coordination, open distributed systems, late binding |
18 | Thomas P. Jensen |
Disjunctive Program Analysis for Algebraic Data Types. |
ACM Trans. Program. Lang. Syst. |
1997 |
DBLP DOI BibTeX RDF |
abstract interpretaton, binding-time and data-flow analysis, nonstandard type systems, lambda calculus, strictness analysis |
18 | Amir A. Khwaja |
Enhancing extensibility of the design rule checker of an EDA tool by object-oriented modeling. |
COMPSAC |
1997 |
DBLP DOI BibTeX RDF |
design rule checker, design rule checking systems, electronic design automation tools, semiconductor technology, DRC systems, DRC module, IC package design tool, object oriented modeling technique, abstraction, inheritance, extensibility, object oriented modeling, encapsulation, circuit CAD, dynamic binding, EDA tool |
18 | Jürgen Teich, Tobias Blickle, Lothar Thiele |
An evolutionary approach to system-level synthesis. |
CODES |
1997 |
DBLP DOI BibTeX RDF |
architecture selection, cost constraints, graph-based mapping model, heterogeneous hardware/software architecture, optimal mapping, performance constraints, task-level specification mapping, video-codec implementations, genetic algorithms, scheduling, memories, ASICs, design space exploration, allocation, optimization problem, binding, buses, system-level synthesis, evolutionary approach, algorithm mapping, general-purpose processors, dedicated processors |
18 | Yuri Pogudin |
Simulation Of Fine-Grained Parallel Algorithms With The ALT (Animated Language Tools) System. |
DIS-RT |
1997 |
DBLP DOI BibTeX RDF |
fine-grained parallel algorithms simulation, ALT system, Animated Language Tools, textual elements, algorithm behaviour visualization, source representation, functional details, binding covers mechanism, parallel substitution algorithm model, interactive graphic forms, data structure display, source-code functional elements, graphical data objects, equivalent transformations optimization, parallel algorithms, C language, language interface |
18 | James F. Leathrum, K. A. Liburdy |
A formal approach to requirements based testing in open systems standards. |
ICRE |
1996 |
DBLP DOI BibTeX RDF |
requirements based testing, IEEE POSIX arena, open systems standards, full scale conformance test suite development, executable tests, Clemson Automated Testing System, design taxonomy, IEEE Std 10035-The Ada Language Binding to POSIX, formal specification, testing, systems analysis, open systems, conformance testing, IEEE standards, software standards, automatic translation, test requirements, formal approach |
18 | Günter Graw, Volker Gruhn, Heiko Krumm |
Support of cooperating and distributed business processes. |
ICPADS |
1996 |
DBLP DOI BibTeX RDF |
distributed business processes, cooperating business processes, business process management systems, computer-based information processing, personal activities, business procedures, computer-based business process assistance, dynamic naming, object trading, distributed databases, workflow management systems, binding, management information systems |
18 | Kanad Ghose, Kiran Raghavendra Desai, Peter M. Kogge |
Using Method Lookup Caches and Register Windowing to Speed Up Dynamically-Bound Object-Oriented Applications. |
EUROMICRO |
1996 |
DBLP DOI BibTeX RDF |
method lookup caches, dynamically-bound object-oriented applications, logical reference, method binding, context allocation, contemporary pipelined datapath, detailed register level simulation, object-oriented programming, object oriented programming languages, register windowing |
18 | Zoran Milosevic, David Arnold 0002, Luke O'Connor |
Inter-enterprise contract architecture for open distributed systems: security requirements. |
WETICE |
1996 |
DBLP DOI BibTeX RDF |
inter-enterprise contract architecture, electronic inter-enterprise interactions, enforcement capability, business contracts, standard contract sequence reuse, public repository, binding, performance monitoring, security requirements, business communication, open distributed systems, distributed infrastructure |
18 | Herman Schmit, Donald E. Thomas |
Array mapping in behavioral synthesis. |
ISSS |
1995 |
DBLP DOI BibTeX RDF |
array grouping, array mapping, memory components, memory design space, schedule length, scheduling, data structures, memory architecture, hardware description languages, binding, behavioral synthesis, access times, design representation, hardware synthesis, synthesis tool |
18 | Aviel D. Rubin |
Extending NCP for protocols using public keys. |
ICCCN |
1995 |
DBLP DOI BibTeX RDF |
nonmonotonic cryptographic protocols, asymmetric keys, update function, principals, binding requirements, public key protocol, protocols, certificates, inference rules |
18 | Wayne Citrin, Richard Hall, Benjamin G. Zorn |
Programming with Visual Expressions. |
VL |
1995 |
DBLP DOI BibTeX RDF |
visual expressions, formal symbolic term rewriting system, VEX, expression-oriented component, VIPR, computer science education, visual programming, visual languages, teaching, teaching, lambda calculus, lambda calculus, programming theory, binding, rewriting systems, substitution, visual programming language, programming language semantics, functional programming languages, free variables |
18 | Minoru Asogawa, Yukiko Fujiwara, Akihiko Konagaya |
A combination of a functional motif model and a structural motif model for a database validation. |
HICSS (5) |
1995 |
DBLP DOI BibTeX RDF |
functional motif model, structural motif model, database validation, leucine zipper motif, twisted alpha helix sequences, DNA binding site, alpha helix region, Swiss Protein database, helical structures, PDB database, neural network, hidden Markov models, HMM, hidden Markov model, database management systems, neural nets, DNA, genetics, biology computing, subsequence |
18 | Rong N. Chang, Chinya V. Ravishankar |
A Service Acquisition Mechanism for Server-Based Heterogeneous Distributed Systems. |
IEEE Trans. Parallel Distributed Syst. |
1994 |
DBLP DOI BibTeX RDF |
serviceacquisition mechanism, server-based heterogeneous distributed systems, remote networkservers, server interface binding protocols, interface operation invocation protocols, Clibrary interface, protocols, distributed processing, abstract data types, abstract data type, network servers |
18 | Moises Lejter, Scott Meyers, Steven P. Reiss |
Support for Maintaining Object-Oriented Programs. |
IEEE Trans. Software Eng. |
1992 |
DBLP DOI BibTeX RDF |
semantics-based tools, C++ programs, interactive database interface, text editor, object-oriented programs, object-oriented programming, relational databases, software maintenance, inheritance, inheritance, object-oriented languages, object-oriented languages, C language, relational database system, dynamic binding, program maintenance |
18 | Jesper Jørgensen |
Generating a Compiler for a Lazy Language by Partial Evaluation. |
POPL |
1992 |
DBLP DOI BibTeX RDF |
binding time improvements, lazy functional languages, partial evaluation, compiler generation |
18 | Yih-Farn Chen, Michael Y. Nishimoto, C. V. Ramamoorthy |
The C Information Abstraction System. |
IEEE Trans. Software Eng. |
1990 |
DBLP DOI BibTeX RDF |
C information abstraction system, relational information, software tasks, graphical views, subsystem extraction, program layering, binding analysis, data structures, relational databases, conceptual model, programming, C language, program structures, C programs, dead code elimination, relational views |
18 | Joachim W. Schmidt, Florian Matthes |
Language Technology for Post-relational Data Systems. |
IBM Symposium: Database Systems of the 90s |
1990 |
DBLP DOI BibTeX RDF |
language design principles, naming schemes, binding mechanisms, DBPL, interoperability, query languages, type systems, open systems, database programming languages |
18 | Richard A. Volz, Trevor N. Mudge, Gregory D. Buzzard, Padmanabhan Krishnan |
Translation and Execution of Distributed Ada Programs: Is It Still Ada? |
IEEE Trans. Software Eng. |
1989 |
DBLP DOI BibTeX RDF |
distributed Ada programs, memory access architecture, binding time, system homogeneity, library packages, Ada, distributed processing, programming, program interpreters, distributed execution |
18 | Thomas G. Moher |
PROVIDE: A Process Visualization and Debugging Environment. |
IEEE Trans. Software Eng. |
1988 |
DBLP DOI BibTeX RDF |
process visualization environment, PROVIDE, University of Illinois, deferred-binding program animation, process history consistency maintenance, Macintosh workstations, VAX 11/780, 4.2 BSD Unix, computer graphics, programming environments, program debugging, program debugging, program execution, interactive computer graphics, debugging environment |
18 | Ronald Morrison, Alan Dearle, Chris D. Marlin |
Adaptive Data Stores. |
Australian Joint Conference on Artificial Intelligence |
1988 |
DBLP DOI BibTeX RDF |
strong typing, adaptive systems, persistence, production systems, dynamic binding |
18 | Christoph Felix Geissler, Lars-Michael Schöpper, Anna Franziska Engesser, Christian Beste, Alexander Münchau, Christian Frings |
Turning the Light Switch on Binding: Prefrontal Activity for Binding and Retrieval in Action Control. |
J. Cogn. Neurosci. |
2024 |
DBLP DOI BibTeX RDF |
|
18 | Aitor Valdivia, F. Javier Luque, Salomé Llabrés |
Binding of Cholesterol to the N-Terminal Domain of the NPC1L1 Transporter: Analysis of the Epimerization-Related Binding Selectivity and Loop Mutations. |
J. Chem. Inf. Model. |
2024 |
DBLP DOI BibTeX RDF |
|
18 | Te Liu, Sichao Huang, Qian Zhang, Yu Xia, Manjie Zhang, Bin Sun 0005 |
Reconciling ASPP-p53 binding mode discrepancies through an ensemble binding framework that bridges crystallography and NMR data. |
PLoS Comput. Biol. |
2024 |
DBLP DOI BibTeX RDF |
|
18 | Marianna Stampolaki, Ioannis Stylianakis, Helen I. Zgurskaya, Antonios Kolocouris |
Study of SQ109 analogs binding to mycobacterium MmpL3 transporter using MD simulations and alchemical relative binding free energy calculations. |
J. Comput. Aided Mol. Des. |
2023 |
DBLP DOI BibTeX RDF |
|
18 | Jaikee Kumar Singh, Jai Singh, Sandeep Kumar Srivastava |
Investigating the role of glycans in Omicron sub-lineages XBB.1.5 and XBB.1.16 binding to host receptor using molecular dynamics and binding free energy calculations. |
J. Comput. Aided Mol. Des. |
2023 |
DBLP DOI BibTeX RDF |
|
18 | Haiyi Chen, Yue Guo, Shengqing Ye, Jintu Zhang, Haotian Zhang, Na Liu, Rui Zhou, Tingjun Hou, Hongguang Xia, Yu Kang 0002, Mojie Duan |
On the Dynamic Mechanism of Long-Flexible Fatty Acid Binding to Fatty Acid Binding Protein: Resolving the Long-Standing Debate. |
J. Chem. Inf. Model. |
2023 |
DBLP DOI BibTeX RDF |
|
18 | Riccardo Rozza, Pavel Janos, Alessandra Magistrato |
Assessing the Binding Mode of a Splicing Modulator Stimulating Pre-mRNA Binding to the Plastic U2AF2 Splicing Factor. |
J. Chem. Inf. Model. |
2023 |
DBLP DOI BibTeX RDF |
|
18 | Joel Graef, Christiane Ehrt, Matthias Rarey |
Binding Site Detection Remastered: Enabling Fast, Robust, and Reliable Binding Site Detection and Descriptor Calculation with DoGSite3. |
J. Chem. Inf. Model. |
2023 |
DBLP DOI BibTeX RDF |
|
18 | Huaxin Zhou, Haohao Fu, Xueguang Shao, Wensheng Cai |
Binding Thermodynamics of Fourth-Generation EGFR Inhibitors Revealed by Absolute Binding Free Energy Calculations. |
J. Chem. Inf. Model. |
2023 |
DBLP DOI BibTeX RDF |
|
18 | Jie Yu, Zhaojun Li, Geng Chen, Xiangtai Kong, Jie Hu, Dingyan Wang, Duanhua Cao, Yanbei Li, Ruifeng Huo, Gang Wang, Xiaohong Liu, Hualiang Jiang, Xutong Li, Xiaomin Luo, Mingyue Zheng |
Computing the relative binding affinity of ligands based on a pairwise binding comparison network. |
Nat. Comput. Sci. |
2023 |
DBLP DOI BibTeX RDF |
|
18 | Shuang Yang, Weikang Gong, Tong Zhou, Xiaohan Sun, Lei Chen, Wenxue Zhou, Chunhua Li |
emPDBA: protein-DNA binding affinity prediction by combining features from binding partners and interface learned with ensemble regression model. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
18 | Ke Yan 0003, Jiawei Feng, Jing Huang, Hao Wu |
iDRPro-SC: identifying DNA-binding proteins and RNA-binding proteins based on subfunction classifiers. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
18 | Ozgur Can Arican, Özgür Gümüs |
PredDRBP-MLP: Prediction of DNA-binding proteins and RNA-binding proteins by multilayer perceptron. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
18 | Ammar Ammar, Rachel Cavill, Chris T. A. Evelo, Egon L. Willighagen |
PSnpBind-ML: predicting the effect of binding site mutations on protein-ligand binding affinity. |
J. Cheminformatics |
2023 |
DBLP DOI BibTeX RDF |
|
18 | Pedro A. Valiente, Satra Nim, Jinah Lee, Seungtaek Kim, Philip M. Kim |
Targeting the Receptor-Binding Motif of SARS-CoV-2 with D-Peptides Mimicking the ACE2 Binding Helix: Lessons for Inhibiting Omicron and Future Variants of Concern. |
J. Chem. Inf. Model. |
2022 |
DBLP DOI BibTeX RDF |
|
18 | Zsolt Fazekas, Dóra K. Menyhárd, András Perczel |
Omicron Binding Mode: Contact Analysis and Dynamics of the Omicron Receptor-Binding Domain in Complex with ACE2. |
J. Chem. Inf. Model. |
2022 |
DBLP DOI BibTeX RDF |
|
18 | Wanqian Dong, Rui Zhou, Jiawen Chen, Zhengyu Shu, Mojie Duan |
Phosphorylation Regulation on the Homo-Dimeric Binding of Transactive Response DNA-Binding Protein. |
J. Chem. Inf. Model. |
2022 |
DBLP DOI BibTeX RDF |
|
18 | Dominykas Lukauskis, Marley L. Samways, Simone Aureli, Benjamin P. Cossins, Richard D. Taylor, Francesco Luigi Gervasio |
Open Binding Pose Metadynamics: An Effective Approach for the Ranking of Protein-Ligand Binding Poses. |
J. Chem. Inf. Model. |
2022 |
DBLP DOI BibTeX RDF |
|
18 | Abdul Basit, Ajeet Kumar Yadav, Pradipta Bandyopadhyay |
Calcium Ion Binding to the Mutants of Calmodulin: A Structure-Based Computational Predictive Model of Binding Affinity Using a Charge Scaling Approach in Molecular Dynamics Simulation. |
J. Chem. Inf. Model. |
2022 |
DBLP DOI BibTeX RDF |
|
18 | Jiaxin Han, Tingting Liu, Xinben Zhang, Yanqing Yang, Yulong Shi, Jintian Li, Minfei Ma, Weiliang Zhu, Likun Gong, Zhijian Xu |
D3AI-Spike: A deep learning platform for predicting binding affinity between SARS-CoV-2 spike receptor binding domain with multiple amino acid mutations and human angiotensin-converting enzyme 2. |
Comput. Biol. Medicine |
2022 |
DBLP DOI BibTeX RDF |
|
18 | Athar Shafiq, Farrukh Zubair, Amna Ambreen, Muhammad Suleman, Qudsia Yousafi, Zahid Rasul Niazi, Zeeshan Anwar, Abbas Khan, Anwar Mohammad, Dong-Qing Wei |
Investigation of the binding and dynamic features of A.30 variant revealed higher binding of RBD for hACE2 and escapes the neutralizing antibody: A molecular simulation approach. |
Comput. Biol. Medicine |
2022 |
DBLP DOI BibTeX RDF |
|
18 | Jun Zhang, Qingcai Chen, Bin Liu 0014 |
DeepDRBP-2L: A New Genome Annotation Predictor for Identifying DNA-Binding Proteins and RNA-Binding Proteins Using Convolutional Neural Network and Long Short-Term Memory. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
18 | Elmeri M. Jokinen, Krishnasamy Gopinath, Sami T. Kurkinen, Olli T. Pentikäinen |
Detection of Binding Sites on SARS-CoV-2 Spike Protein Receptor-Binding Domain by Molecular Dynamics Simulations in Mixed Solvents. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
18 | Cecylia S. Lupala, Xuanxuan Li, Jian Lei, Hong Chen, Jianxun Qi, Haiguang Liu, Xiao-dong Su |
Computational simulations reveal the binding dynamics between human ACE2 and the receptor binding domain of SARS-CoV-2 spike protein. |
Quant. Biol. |
2021 |
DBLP DOI BibTeX RDF |
|
18 | Zhaoxi Sun |
SAMPL7 TrimerTrip host-guest binding poses and binding affinities from spherical-coordinates-biased simulations. |
J. Comput. Aided Mol. Des. |
2021 |
DBLP DOI BibTeX RDF |
|
18 | Michael Edmund Beck, Jacopo Negroni, Svend Matthiesen, Michael Kohnen, Christoph Riplinger |
A binding mode hypothesis for prothioconazole binding to CYP51 derived from first principles quantum chemistry. |
J. Comput. Aided Mol. Des. |
2021 |
DBLP DOI BibTeX RDF |
|
18 | Ariane Nunes-Alves, Fabian Ormersbach, Rebecca C. Wade |
Prediction of the Drug-Target Binding Kinetics for Flexible Proteins by Comparative Binding Energy Analysis. |
J. Chem. Inf. Model. |
2021 |
DBLP DOI BibTeX RDF |
|
18 | Zhe Huai, Zhaoxi Shen, Zhaoxi Sun |
Binding Thermodynamics and Interaction Patterns of Inhibitor-Major Urinary Protein-I Binding from Extensive Free-Energy Calculations: Benchmarking AMBER Force Fields. |
J. Chem. Inf. Model. |
2021 |
DBLP DOI BibTeX RDF |
|
18 | Hehe Wu, Xiaoyong Pan, Yang Yang 0030, Hong-Bin Shen |
Recognizing binding sites of poorly characterized RNA-binding proteins on circular RNAs using attention Siamese network. |
Briefings Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
18 | Eitamar Tripto, Yaron Orenstein |
A comparative analysis of RNA-binding proteins binding models learned from RNAcompete, RNA Bind-n-Seq and eCLIP data. |
Briefings Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
18 | Salma Sohrabi-Jahromi, Johannes Söding |
Thermodynamic modeling reveals widespread multivalent binding by RNA-binding proteins. |
Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
18 | Claire E. Plunkett, Sean D. Lawley |
Bimolecular Binding Rates for Pairs of Spherical Molecules with Small Binding Sites. |
Multiscale Model. Simul. |
2021 |
DBLP DOI BibTeX RDF |
|
18 | Jianzhong Chen, Wei Wang, Haibo Sun, Laixue Pang, Huayin Bao |
Binding mechanism of inhibitors to p38α MAP kinase deciphered by using multiple replica Gaussian accelerated molecular dynamics and calculations of binding free energies. |
Comput. Biol. Medicine |
2021 |
DBLP DOI BibTeX RDF |
|
18 | Caroline Bonazza, Jiao Zhu, Roger Hasler, Rosa Mastrogiacomo, Paolo Pelosi, Wolfgang Knoll |
Responses of the Pheromone-Binding Protein of the Silk Moth Bombyx mori on a Graphene Biosensor Match Binding Constants in Solution. |
Sensors |
2021 |
DBLP DOI BibTeX RDF |
|
18 | Lijun Quan, Jie Mei, Ruji He, Xiaoyu Sun 0006, Liangpeng Nie, Kailong Li, Qiang Lyu |
Quantifying Intensities of Transcription Factor-DNA Binding by Learning From an Ensemble of Protein Binding Microarrays. |
IEEE J. Biomed. Health Informatics |
2021 |
DBLP DOI BibTeX RDF |
|
18 | Mohammad Nakhaee, S. Ahmad Ketabi, François M. Peeters |
Tight-Binding Studio: A technical software package to find the parameters of tight-binding Hamiltonian. |
Comput. Phys. Commun. |
2020 |
DBLP DOI BibTeX RDF |
|
18 | Kalaiarasi Chinnasamy, Manjula Saravanan, Kumaradhas Poomani |
Investigation of binding mechanism and downregulation of elacestrant for wild and L536S mutant estrogen receptor-α through molecular dynamics simulation and binding free energy analysis. |
J. Comput. Chem. |
2020 |
DBLP DOI BibTeX RDF |
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18 | Jianan Lin, Zhengqing Ouyang |
Large-scale analysis of the position-dependent binding and regulation of human RNA binding proteins. |
Quant. Biol. |
2020 |
DBLP DOI BibTeX RDF |
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18 | Zhaoxi Sun, Qiao-Le He, Xiao Li, Zhengdan Zhu |
SAMPL6 host-guest binding affinities and binding poses from spherical-coordinates-biased simulations. |
J. Comput. Aided Mol. Des. |
2020 |
DBLP DOI BibTeX RDF |
|
18 | Kelly Smart, Jean-Dominique Gallezot, Nabeel Nabulsi, David Labaree, Ming-Qiang Zheng, Yiyun Huang, Richard E. Carson, Ansel T. Hillmer, Patrick D. Worhunsky |
Separating dopamine D2 and D3 receptor sources of [11C]-(+)-PHNO binding potential: Independent component analysis of competitive binding. |
NeuroImage |
2020 |
DBLP DOI BibTeX RDF |
|
18 | Giacomo Rossino, Ivana Orellana, Julio Caballero, Dirk Schepmann, Bernhard Wünsch, Marta Rui, Daniela Rossi, Mariela González-Avendaño, Simona Collina, Ariela Vergara Jaque |
New Insights into the Opening of the Occluded Ligand-Binding Pocket of Sigma1 Receptor: Binding of a Novel Bivalent RC-33 Derivative. |
J. Chem. Inf. Model. |
2020 |
DBLP DOI BibTeX RDF |
|
18 | Daniel Cappel, Steven Jerome, Gerhard Hessler, Hans Matter |
Impact of Different Automated Binding Pose Generation Approaches on Relative Binding Free Energy Simulations. |
J. Chem. Inf. Model. |
2020 |
DBLP DOI BibTeX RDF |
|
18 | Dinesh Kumar Sriramulu, Sun-Gu Lee |
Combinatorial Effect of Ligand and Ligand-Binding Site Hydrophobicities on Binding Affinity. |
J. Chem. Inf. Model. |
2020 |
DBLP DOI BibTeX RDF |
|
18 | Cong Fan, Ping-pui Wong, Huiying Zhao |
DStruBTarget: Integrating Binding Affinity with Structure Similarity for Ligand-Binding Protein Prediction. |
J. Chem. Inf. Model. |
2020 |
DBLP DOI BibTeX RDF |
|
18 | Nguyen Thanh Nguyen, Trung Hai Nguyen, T. Ngoc Han Pham, Nguyen Truong Huy, Mai Van Bay, Minh Quan Pham, Pham Cam Nam, Van V. Vu, Son Tung Ngo 0002 |
Autodock Vina Adopts More Accurate Binding Poses but Autodock4 Forms Better Binding Affinity. |
J. Chem. Inf. Model. |
2020 |
DBLP DOI BibTeX RDF |
|
18 | Lorenzo Di Rienzo, Edoardo Milanetti, Josephine Alba, Marco D'Abramo |
Quantitative Characterization of Binding Pockets and Binding Complementarity by Means of Zernike Descriptors. |
J. Chem. Inf. Model. |
2020 |
DBLP DOI BibTeX RDF |
|
18 | Shu Yang, Xiaoxi Liu, Raymond T. Ng |
ProbeRating: a recommender system to infer binding profiles for nucleic acid-binding proteins. |
Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
18 | Farzin Sohraby, Mostafa Javaheri Moghadam, Masoud Aliyar, Hassan Aryapour |
A boosted unbiased molecular dynamics method for predicting ligands binding mechanisms: probing the binding pathway of dasatinib to Src-kinase. |
Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
18 | Wojtek Przepiorka, Andreas Diekmann |
Binding Contracts, Non-Binding Promises and Social Feedback in the Intertemporal Common-Pool Resource Game. |
Games |
2020 |
DBLP DOI BibTeX RDF |
|
18 | Arumay Pal, Yaakov Levy |
Balance between asymmetry and abundance in multi-domain DNA-binding proteins may regulate the kinetics of their binding to DNA. |
PLoS Comput. Biol. |
2020 |
DBLP DOI BibTeX RDF |
|
18 | Federico Sevlever, Juan Pablo Di-Bella, Alejandra C. Ventura |
Discriminating between negative cooperativity and ligand binding to independent sites using pre-equilibrium properties of binding curves. |
PLoS Comput. Biol. |
2020 |
DBLP DOI BibTeX RDF |
|
18 | Zou Hui, Yang Hui-lan |
Detection of Ccctc-Binding Sequence Factor at Herpes Simplex Virus Type II Binding Site Sequence. |
CNIOT |
2020 |
DBLP DOI BibTeX RDF |
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