Search results for "phylogeny"

Hits ?▲	Authors	Title	Venue	Year	Link
16	Filippo Petroni, Maurizio Serva	Automated words stability and languages phylogeny	CoRR	2009	DBLP BibTeX RDF
16	Maurizio Serva	Automated languages phylogeny from Levenshtein distance	CoRR	2009	DBLP BibTeX RDF
16	Sebastien Roch	Sequence-Length Requirement of Distance-Based Phylogeny Reconstruction: Breaking the Polynomial Barrier.	CoRR	2009	DBLP BibTeX RDF
16	Ashesh Nandy, Ambarnil Ghosh, Papiya Nandy	Numerical Characterization of Protein Sequences and Application to Voltage-Gated Sodium Channel α Subunit Phylogeny.	Silico Biol.	2009	DBLP DOI BibTeX RDF
16	Jens Gramm, Tzvika Hartman, Till Nierhoff, Roded Sharan, Till Tantau	On the complexity of SNP block partitioning under the perfect phylogeny model.	Discret. Math.	2009	DBLP DOI BibTeX RDF
16	David Sankoff, Chunfang Zheng, P. Kerr Wall, Claude de Pamphilis, James H. Leebens-Mack, Victor A. Albert	Towards Improved Reconstruction of Ancestral Gene Order in Angiosperm Phylogeny.	J. Comput. Biol.	2009	DBLP DOI BibTeX RDF
16	Feng Pan 0001, Leonard McMillan, Fernando Pardo-Manuel de Villena, David Threadgill, Wei Wang 0010	TreeQA: Quantitative Genome Wide Association Mapping Using Local Perfect Phylogeny Trees.	Pacific Symposium on Biocomputing	2009	DBLP BibTeX RDF
16	Simon A. Berger, Alexandros Stamatakis	Accuracy and Performance of Single versus Double Precision Arithmetics for Maximum Likelihood Phylogeny Reconstruction.	PPAM (2)	2009	DBLP DOI BibTeX RDF
16	Erica Dawn Blight	Resolving Hydractiniidae and Hydroidolina Phylogeny Using Mitochondrial Genomes.		2009	RDF
16	Miklós Csürös	Distance-Based Phylogeny Reconstruction (Fast-Converging).	Encyclopedia of Algorithms	2008	DBLP DOI BibTeX RDF
16		Phylogeny Reconstruction.	Encyclopedia of Algorithms	2008	DBLP DOI BibTeX RDF
16	Richard Desper, Olivier Gascuel	Distance-Based Phylogeny Reconstruction (Optimal Radius).	Encyclopedia of Algorithms	2008	DBLP DOI BibTeX RDF
16	Jesper Jansson 0001	Perfect Phylogeny (Bounded Number of States).	Encyclopedia of Algorithms	2008	DBLP DOI BibTeX RDF
16	Giuseppe Lancia	Perfect Phylogeny Haplotyping.	Encyclopedia of Algorithms	2008	DBLP DOI BibTeX RDF
16	Jesper Jansson 0001	Directed Perfect Phylogeny (Binary Characters).	Encyclopedia of Algorithms	2008	DBLP DOI BibTeX RDF
16	Martin Kostka, Magdalena Uzlikova, Ivan Cepicka, Jaroslav Flegr	SlowFaster, a user-friendly program for slow-fast analysis and its application on phylogeny of Blastocystis.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
16	Jonathan R. Manning, Emily R. Jefferson, Geoffrey J. Barton	The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
16	Zhihua Liu, Xiao Sun 0006	Coronavirus phylogeny based on Base-Base Correlation.	Int. J. Bioinform. Res. Appl.	2008	DBLP DOI BibTeX RDF
16	Johanna Nichols, Tandy J. Warnow	Tutorial on Computational Linguistic Phylogeny.	Lang. Linguistics Compass	2008	DBLP DOI BibTeX RDF
16	Jim Whitfield	Mathematics of Evolution and Phylogeny, Edited by Olivier Gascuel.	Briefings Bioinform.	2008	DBLP DOI BibTeX RDF
16	Alexis Dereeper, Valentin Guignon, Guillaume Blanc, Stéphane Audic, S. Buffet, François Chevenet, Jean-François Dufayard, Stéphane Guindon, Vincent Lefort, Magali Lescot, Jean-Michel Claverie, Olivier Gascuel	Phylogeny.fr: robust phylogenetic analysis for the non-specialist.	Nucleic Acids Res.	2008	DBLP DOI BibTeX RDF
16	S. D. Dunn, Lindi M. Wahl, Gregory B. Gloor	Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction.	Bioinform.	2008	DBLP DOI BibTeX RDF
16	Matthias Wolf 0002, Benjamin Ruderisch, Thomas Dandekar, Jörg Schultz, Tobias Müller 0001	ProfDistS: (profile-) distance based phylogeny on sequence - structure alignments.	Bioinform.	2008	DBLP DOI BibTeX RDF
16	Radu Mihaescu, Cameron Hill, Satish Rao	Fast phylogeny reconstruction through learning of ancestral sequences	CoRR	2008	DBLP BibTeX RDF
16	Amit Bafana, Tapan Chakrabarti	Lateral gene transfer in phylogeny of azoreductase enzyme.	Comput. Biol. Chem.	2008	DBLP DOI BibTeX RDF
16	Sagi Snir, Tandy J. Warnow, Satish Rao	Short Quartet Puzzling: A New Quartet-Based Phylogeny Reconstruction Algorithm.	J. Comput. Biol.	2008	DBLP DOI BibTeX RDF
16	Chunfang Zheng, Qian Zhu 0002, David Sankoff	Descendants of Whole Genome Duplication within Gene Order Phylogeny.	J. Comput. Biol.	2008	DBLP DOI BibTeX RDF
16	Md. Rafiul Hassan, M. Maruf Hossain, Chandan K. Karmakar, Michael Kirley	Phylogeny Inference Using a Multi-objective Evolutionary Algorithm with Indirect Representation.	SEAL	2008	DBLP DOI BibTeX RDF
16	David Sankoff, Chunfang Zheng, P. Kerr Wall, Claude W. dePamphilis, James H. Leebens-Mack, Victor A. Albert	Internal Validation of Ancestral Gene Order Reconstruction in Angiosperm Phylogeny.	RECOMB-CG	2008	DBLP DOI BibTeX RDF
16	Xiao-hui Niu, Nana Li, Feng Shi, Xue-yan Li	A Novel Measurement of Sequence Dissimilarity and Its Application to Phylogeny.	ICNC (6)	2008	DBLP DOI BibTeX RDF
16	Jeffrey D. Leblond, Andrew D. Lasiter, Cen Li, Ramiro Logares, Karin Rengefors, Terence J. Evens	Applying Clustering and Phylogeny Analysis to Study Dinoflagellates Based on Sterol Composition.	BIBM	2008	DBLP DOI BibTeX RDF
16	Sridhar Ramachandran, Travis E. Doom	Validation of the Human Alu phylogeny: a whole-genome analysis.	BIOCOMP	2008	DBLP BibTeX RDF
16	Nabil Abdennadher, Claude Évéquoz, Cédric Billat	Gridifying Phylogeny and Medical Applications on the Volunteer Computing Platform XtremWeb-CH.	HealthGrid	2008	DBLP BibTeX RDF
16	Hans J. Holm	The new arboretum of Indo-European "trees". Can new algorithms reveal the phylogeny and even prehistory of Indo-European?	J. Quant. Linguistics	2007	DBLP DOI BibTeX RDF
16	Xizhen Zhang, Jiawei Luo 0001, Li Yang	New invariant of DNA sequence based on 3DD-curves and its application on phylogeny.	J. Comput. Chem.	2007	DBLP DOI BibTeX RDF
16	Namshin Kim, Christopher J. Lee	Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption with 3D visualization.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
16	Srinath Sridhar 0001, Fumei Lam, Guy E. Blelloch, R. Ravi 0001, Russell Schwartz	Direct maximum parsimony phylogeny reconstruction from genotype data.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
16	Eduardo Ruiz-Pesini, Marie T. Lott, Vincent Procaccio, Jason C. Poole, Marty C. Brandon, Dan Mishmar, Christina Yi, James Kreuziger, Pierre Baldi, Douglas C. Wallace	An enhanced MITOMAP with a global mtDNA mutational phylogeny.	Nucleic Acids Res.	2007	DBLP DOI BibTeX RDF
16	Matan Ninio, Eyal Privman, Tal Pupko, Nir Friedman	Phylogeny reconstruction: increasing the accuracy of pairwise distance estimation using Bayesian inference of evolutionary rates.	Bioinform.	2007	DBLP DOI BibTeX RDF
16	Pawel Górecki 0001, Jerzy Tiuryn	Inferring phylogeny from whole genomes.	Bioinform.	2007	DBLP DOI BibTeX RDF
16	Robert P. Davey, George Savva, Jo L. Dicks, Ian N. Roberts	MPP: a microarray-to-phylogeny pipeline for analysis of gene and marker content datasets.	Bioinform.	2007	DBLP DOI BibTeX RDF
16	Elchanan Mossel, Sébastien Roch	Incomplete Lineage Sorting: Consistent Phylogeny Estimation From Multiple Loci.	CoRR	2007	DBLP BibTeX RDF
16	Yu-Min Lin, Shu-Cherng Fang, Jeffrey L. Thorne	A tabu search algorithm for maximum parsimony phylogeny inference.	Eur. J. Oper. Res.	2007	DBLP DOI BibTeX RDF
16	Manuele Bicego, Franco Dellaglio, Giovanna E. Felis	Multimodal Phylogeny for Taxonomy: Integrating Information from nucleotide and amino acid Sequences.	J. Bioinform. Comput. Biol.	2007	DBLP DOI BibTeX RDF
16	Daniel Gerlach, Matthias Wolf 0002, Thomas Dandekar, Tobias Müller 0001, Andreas Pokorny, Sven Rahmann	Deep Metazoan Phylogeny.	Silico Biol.	2007	DBLP BibTeX RDF
16	Sanne Abeln, Carlo Teubner, Charlotte M. Deane	Using Phylogeny to Improve Genome-Wide Distant Homology Recognition.	PLoS Comput. Biol.	2007	DBLP DOI BibTeX RDF
16	Stefano Lanzeni, Enza Messina, Francesco Archetti	Towards metabolic networks phylogeny using Petri Net-based expansional analysis.	BMC Syst. Biol.	2007	DBLP DOI BibTeX RDF
16	Daniel Stefankovic, Eric Vigoda	Phylogeny of Mixture Models: Robustness of Maximum Likelihood and Non-Identifiable Distributions.	J. Comput. Biol.	2007	DBLP DOI BibTeX RDF
16	Olivier Gascuel (eds.)	Mathematics of Evolution and Phylogeny.		2007	DBLP BibTeX RDF
16	David Sankoff, Chunfang Zheng, Qian Zhu 0002	Polyploids, genome halving and phylogeny.	ISMB/ECCB (Supplement of Bioinformatics)	2007	DBLP DOI BibTeX RDF
16	Sean O'Rourke, Noah Zaitlen, Nebojsa Jojic, Eleazar Eskin	Reconstructing the Phylogeny of Mobile Elements.	RECOMB	2007	DBLP DOI BibTeX RDF
16	Abdullah N. Arslan, Peyman Bizargity	Phylogeny By Top Down Clustering Using a Given Multiple Alignment.	BIBE	2007	DBLP DOI BibTeX RDF
16	Jeffrey L. Tilson, Gloria Rendon, Mao-Feng Ger, Eric Jakobsson	MotifNetwork: A Grid-enabled Workflow for High-throughput Domain Analysis of Biological Sequences: Implications for annotation and study of phylogeny, protein interactions, and intraspecies variation.	BIBE	2007	DBLP DOI BibTeX RDF
16	Jason D. Bakos, Panormitis E. Elenis, Jijun Tang	FPGA Acceleration of Phylogeny Reconstruction for Whole Genome Data.	BIBE	2007	DBLP DOI BibTeX RDF
16	Zu-Guo Yu, Zhi Mao, Li-Qian Zhou, Vo V. Anh	A Mutual Information Based Sequence Distance For Vertebrate Phylogeny Using Complete Mitochondrial Genomes.	ICNC (2)	2007	DBLP DOI BibTeX RDF
16	Li-Qian Zhou, Zu-Guo Yu, Pan-Ren Nie, Fang-Fang Liao, Vo V. Anh, Yang-Jun Chen	Log-correlation Distance And Fourier Transform With Kullback-Leibler Divergence Distance For Construction Of Vertebrate Phylogeny Using Complete Mitochondrial Genomes.	ICNC (2)	2007	DBLP DOI BibTeX RDF
16	Pinghao Wang, Bing Bing Zhou, Monther Tarawneh, Daniel Chu, Chen Wang 0008, Albert Y. Zomaya, Richard P. Brent	A Global Maximum Likelihood Super-Quartet Phylogeny Method.	APBC	2007	DBLP BibTeX RDF
16	Bo Liao, Xuyu Xiang, Wen Zhu	Coronavirus phylogeny based on 2D graphical representation of DNA sequence.	J. Comput. Chem.	2006	DBLP DOI BibTeX RDF
16	Hanno Teeling, Frank Oliver Glöckner	RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
16	Jakob Fredslund	PHY*FI: fast and easy online creation and manipulation of phylogeny color figures.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
16	Jason Gertz, Justin C. Fay, Barak A. Cohen	Phylogeny based discovery of regulatory elements.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
16	Yuri Dotsenko, Cristian Coarfa, Luay Nakhleh, John M. Mellor-Crummey, Usman Roshan	PRec-I-DCM3: a parallel framework for fast and accurate large-scale phylogeny reconstruction.	Int. J. Bioinform. Res. Appl.	2006	DBLP DOI BibTeX RDF
16	Peter Damaschke	Parameterized enumeration, transversals, and imperfect phylogeny reconstruction.	Theor. Comput. Sci.	2006	DBLP DOI BibTeX RDF
16	Gilles Parmentier, Denis Trystram, Jaroslaw Zola	Large scale multiple sequence alignment with simultaneous phylogeny inference.	J. Parallel Distributed Comput.	2006	DBLP DOI BibTeX RDF
16	Blaise T. F. Alako, Daphne Rainey, Harm Nijveen, Jack A. M. Leunissen	TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure.	Nucleic Acids Res.	2006	DBLP DOI BibTeX RDF
16	Michael J. Sanderson	Paloverde: an OpenGL 3D phylogeny browser.	Bioinform.	2006	DBLP DOI BibTeX RDF
16	Vivek Gopalan, Wei-Gang Qiu, Michael Z. Chen, Arlin Stoltzfus	Nexplorer: phylogeny-based exploration of sequence family data.	Bioinform.	2006	DBLP DOI BibTeX RDF
16	Marc A. Suchard, Benjamin D. Redelings	BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny.	Bioinform.	2006	DBLP DOI BibTeX RDF
16	Florencio Pazos, Antonio Rausell, Alfonso Valencia	Phylogeny-independent detection of functional residues.	Bioinform.	2006	DBLP DOI BibTeX RDF
16	Yongqiang Zhao, Wenjie He	Note on competition and phylogeny numbers.	Australas. J Comb.	2006	DBLP BibTeX RDF
16	Laxmi Parida	Using PQ Structures for Genomic Rearrangement Phylogeny.	J. Comput. Biol.	2006	DBLP DOI BibTeX RDF
16	Ravi Vijaya Satya, Amar Mukherjee	An Optimal Algorithm for Perfect Phylogeny Haplotyping.	J. Comput. Biol.	2006	DBLP DOI BibTeX RDF
16	Zhihong Ding, Vladimir Filkov, Dan Gusfield	A Linear-Time Algorithm for the Perfect Phylogeny Haplotyping (PPH) Problem.	J. Comput. Biol.	2006	DBLP DOI BibTeX RDF
16	Usman Roshan, Dennis R. Livesay, Satish Chikkagoudar	Improving progressive alignment for phylogeny reconstruction using parsimonious guide-trees.	BIBE	2006	DBLP DOI BibTeX RDF
16	Jaroslaw Zola, Denis Trystram, Andrei Tchernykh, Carlos A. Brizuela	Parallel multiple sequence alignment with local phylogeny search by simulated annealing.	IPDPS	2006	DBLP DOI BibTeX RDF
16	P. Y. Chan 0001, Tak Wah Lam, Siu-Ming Yiu	A More Accurate and Efficient Whole Genome Phylogeny.	APBC	2006	DBLP BibTeX RDF
16	Bing Bing Zhou, Monther Tarawneh, Daniel Chu, Francis Wang, Chen Wang 0008, Albert Y. Zomaya, Richard P. Brent	On a New Quartet-Based Phylogeny Reconstruction Algorithm.	BIOCOMP	2006	DBLP BibTeX RDF
16	Celso C. Ribeiro, Dalessandro Soares Vianna	A GRASP/VND heuristic for the phylogeny problem using a new neighborhood structure.	Int. Trans. Oper. Res.	2005	DBLP DOI BibTeX RDF
16	Gerton Lunter, István Miklós, Alexei J. Drummond, Jens Ledet Jensen, Jotun Hein	Bayesian coestimation of phylogeny and sequence alignment.	BMC Bioinform.	2005	DBLP DOI BibTeX RDF
16	Davin Butt, Andrew J. Roger, Christian Blouin	libcov: A C++ bioinformatic library to manipulate protein structures, sequence alignments and phylogeny.	BMC Bioinform.	2005	DBLP DOI BibTeX RDF
16	Olivier Bastien, Philippe Ortet, Sylvaine Roy, Eric Maréchal	A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.	BMC Bioinform.	2005	DBLP DOI BibTeX RDF
16	Derek A. Ruths, Luay Nakhleh	Recombination and phylogeny: effects and detection.	Int. J. Bioinform. Res. Appl.	2005	DBLP DOI BibTeX RDF
16	Ina Pfeiffer, Bertram Brenig, Ulrich Kutschera	Molecular phylogeny of selected predaceous leeches with reference to the evolution of body size and terrestrialism.	Theory Biosci.	2005	DBLP DOI BibTeX RDF
16	Christian Roth 0006, Matthew J. Betts, Pär Steffansson, Gisle Sælensminde, David A. Liberles	The Adaptive Evolution Database (TAED): a phylogeny based tool for comparative genomics.	Nucleic Acids Res.	2005	DBLP DOI BibTeX RDF
16	Pam Frost Gorder	Computing life's family tree [phylogeny].	Comput. Sci. Eng.	2005	DBLP DOI BibTeX RDF
16	Stefan R. Henz, Daniel H. Huson, Alexander F. Auch, Kay Nieselt-Struwe, Stephan C. Schuster	Whole-genome prokaryotic phylogeny.	Bioinform.	2005	DBLP DOI BibTeX RDF
16	Thomas M. Keane, Thomas J. Naughton, Simon A. A. Travers, James O. McInerney, Grace P. McCormack	DPRml: distributed phylogeny reconstruction by maximum likelihood.	Bioinform.	2005	DBLP DOI BibTeX RDF
16	Yoon-Seong Jeon, Hwanwon Chung, Sunyoung Park, Inae Hur, Jae-Hak Lee, Jongsik Chun	jPHYDIT: a JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences.	Bioinform.	2005	DBLP DOI BibTeX RDF
16	Gad Kimmel, Ron Shamir	The Incomplete Perfect Phylogeny Haplotype Problem.	J. Bioinform. Comput. Biol.	2005	DBLP DOI BibTeX RDF
16	Stephen G. Hartke	The Elimination Procedure for the Phylogeny Number.	Ars Comb.	2005	DBLP BibTeX RDF
16	Rahul Siddharthan, Eric D. Siggia, Erik van Nimwegen	PhyloGibbs: A Gibbs Sampling Motif Finder That Incorporates Phylogeny.	PLoS Comput. Biol.	2005	DBLP DOI BibTeX RDF
16	Manuel Dehnert, Rainer Plaumann, Werner E. Helm, Marc-Thorsten Hütt	Genome Phylogeny Based on Short-Range Correlations in DNA Sequences.	J. Comput. Biol.	2005	DBLP DOI BibTeX RDF
16	Yunkai Liu, Cun-Quan Zhang	A linear solution for haplotype Perfect Phylogeny Problem (Extended Abstract).	Advances in Bioinformatics and Its Applications	2005	DBLP DOI BibTeX RDF
16	Z. Du, Alexandros Stamatakis, F. Lin, Usman Roshan, Luay Nakhleh	Parallel Divide-and-Conquer Phylogeny Reconstruction by Maximum Likelihood.	HPCC	2005	DBLP DOI BibTeX RDF
16	Christian Blouin, Davin Butt, Glenn Hickey, Andrew Rau-Chaplin	Fast Parallel Maximum Likelihood-Based Protein Phylogeny.	PDCS	2005	DBLP BibTeX RDF
16	Anne Berry, Alain Sigayret, Jeremy P. Spinrad	Faster Dynamic Algorithms for Chordal Graphs, and an Application to Phylogeny.	WG	2005	DBLP DOI BibTeX RDF
16	Xiaomeng Wu, Guohui Lin, Xiu-Feng Wan, Dong Xu 0002	Whole Genome Phylogeny Based on Clustered Signature String Composition.	CSB Workshops	2005	DBLP DOI BibTeX RDF
16	Noppadon Khiripet	Bacterial Whole Genome Phylogeny Using Proteome Comparison and Optimal Reversal Distance.	CSB Workshops	2005	DBLP DOI BibTeX RDF
16	Peter Stevens, Hilary Davis 0001	The angiosperm phylogeny Website - a tool for reference and teaching in a time of change.	ASIST	2005	DBLP DOI BibTeX RDF
16	Tao Liu, Jijun Tang, Bernard M. E. Moret	Quartet-Based Phylogeny Reconstruction from Gene Orders.	COCOON	2005	DBLP DOI BibTeX RDF