Search results for "protein"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
33	Rolv Seehuus, Amund Tveit, Ole Edsberg	Discovering biological motifs with genetic programming.	GECCO	2005	DBLP DOI BibTeX RDF	protein motifs, genetic programming, representations
33	T. C. Ip, Vincent A. Fischetti, Jeanette P. Schmidt	An Algorithm for Identifying Similar Amino Acid Clusters among Different Alpha-Helical Coiled-Coil Proteins Using Their Secondary Structure.	Algorithmica	1999	DBLP DOI BibTeX RDF	Coiled-coil, Epitope, Dynamic programming, Computational biology, Protein structure
33	Yiming Ying, Colin Campbell, Theodoros Damoulas, Mark A. Girolami	Class Prediction from Disparate Biological Data Sources Using an Iterative Multi-Kernel Algorithm.	PRIB	2009	DBLP DOI BibTeX RDF	protein fold prediction, protein subcellular localization, bioinformatics, multi-class, Multiple kernel learning
33	Xing-Ming Zhao, Luonan Chen	Domain-Domain Interaction Identification with a Feature Selection Approach.	PRIB	2008	DBLP DOI BibTeX RDF	Discriminative approach, domain-domain interaction, feature selection, protein-protein interaction
33	Pedro Barahona, Ludwig Krippahl	Constraint Programming in Structural Bioinformatics.	Constraints An Int. J.	2008	DBLP DOI BibTeX RDF	Protein structure determination, Protein docking, Constraint programming, Structural bioinformatics
33	Jia Liu 0023, Yongwei Wu, Weimin Zheng	Grid Enabled Data Integration Framework for Bioinformatics Research.	GCC Workshops	2006	DBLP DOI BibTeX RDF	Metadata Catalog, Activity, Protein-Protein Interaction, OGSA-DAI
33	Kunbin Qu, Nan Lin, Yanmei Lu, Donald G. Payan	Multidimensional Data Integration and Relationship Inference.	IEEE Intell. Syst.	2002	DBLP DOI BibTeX RDF	ontology, bioinformatics, data warehouse, protein-protein interactions
32	Concettina Guerra, Sorin Istrail (eds.)	Mathematical Methods for Protein Structure Analysis and Design, Advanced Lectures	Mathematical Methods for Protein Structure Analysis and Design	2003	DBLP DOI BibTeX RDF
32	Yves-Henri Sanejouand, Georges Trinquier	Proteinlike Properties of Simple Models.	Mathematical Methods for Protein Structure Analysis and Design	2003	DBLP DOI BibTeX RDF
32	Maricel Kann, Richard A. Goldstein	OPTIMA: A New Score Function for the Detection of Remote Homologs.	Mathematical Methods for Protein Structure Analysis and Design	2003	DBLP DOI BibTeX RDF
32	Dean C. Adams, Gavin J. P. Naylor	A Comparison of Methods for Assessing the Structural Similarity of Proteins.	Mathematical Methods for Protein Structure Analysis and Design	2003	DBLP DOI BibTeX RDF
32	Flavio Seno, Cristian Micheletti, Amos Maritan, Jayanth R. Banavar	Learning Effective Amino-Acid Interactions.	Mathematical Methods for Protein Structure Analysis and Design	2003	DBLP DOI BibTeX RDF
32	Panos M. Pardalos, David Shalloway, Guoliang Xue (eds.)	Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding, Proceedings of a DIMACS Workshop, USA, March 20-21, 1995	Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding	1996	DBLP DOI BibTeX RDF
32	Andrew T. Phillips, J. Ben Rosen, Vann Howard Walke	Molecular structure determination by convex, global underestimation of local energy minima.	Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding	1995	DBLP DOI BibTeX RDF
32	Jorge J. Moré, Zhijun Wu	E-optimal solutions to distance geometry problems via global continuation.	Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding	1995	DBLP DOI BibTeX RDF
32		Preface.	Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding	1995	DBLP BibTeX RDF
32	Xiche Hu, Dong Xu, Kenneth Hamer, Klaus Schulten, Juergen Koepke, Hartmut Michel	Knowledge based structure prediction of the light-harvesting complex II of Rhodospirillum molishianum.	Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding	1995	DBLP DOI BibTeX RDF
32	Herbert A. Hauptman	A minimal principle in the phase problem of X-ray crystallography.	Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding	1995	DBLP DOI BibTeX RDF
32	Ruth Pachter, Zhiqiang Wang, James A. Lupo, Steven B. Fairchild, Brian Sennett	The design of chromophore containing biomolecules.	Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding	1995	DBLP DOI BibTeX RDF
32	Jun Gu, Bin Du	A multispace search algorithm for molecular energy minimization.	Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding	1995	DBLP DOI BibTeX RDF
32	Bruce W. Church, Matej Oresic, David Shalloway	Tracking metastable states to free-energy global minima.	Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding	1995	DBLP DOI BibTeX RDF
32	Patricia Amara, Jianpeng Ma, John E. Straub	Global minimization on rugged energy landscapes.	Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding	1995	DBLP DOI BibTeX RDF
32		Foreword.	Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding	1995	DBLP BibTeX RDF
30	Cagatay Calli	Prediction of protein-protein interaction relevance of articles using references.	ISCIS	2009	DBLP DOI BibTeX RDF
30	Tatsuya Asou, Koji Eguchi	Predicting protein-protein relationships from literature using collapsed variational latent dirichlet allocation.	DTMBIO	2008	DBLP DOI BibTeX RDF	biomedical text mining, probabilistic topic models
30	José A. Reyes, David R. Gilbert	Combining One-Class Classification Models Based on Diverse Biological Data for Prediction of Protein-Protein Interactions.	DILS	2008	DBLP DOI BibTeX RDF
30	Richard J. B. Dobson, Patricia B. Munroe, Charles A. Mein, Mark J. Caulfield, Mansoor A. S. Saqi	Combining Protein-Protein Interaction (PPI) Network and Sequence Attributes for Predicting Hypertension Related Proteins.	BIRD	2008	DBLP DOI BibTeX RDF
30	Leif E. Peterson, Matthew A. Coleman	Text-mining protein-protein interaction corpus using concept clustering to identify intermittency.	IJCNN	2008	DBLP DOI BibTeX RDF
30	Martin S. R. Paradesi, Doina Caragea, William H. Hsu	Structural Prediction of Protein-Protein Interactions in Saccharomyces cerevisiae.	BIBE	2007	DBLP DOI BibTeX RDF
30	Clara Pizzuti, Simona E. Rombo	PINCoC : A Co-clustering Based Approach to Analyze Protein-Protein Interaction Networks.	IDEAL	2007	DBLP DOI BibTeX RDF
30	Kuo-Yuan Hwa, Wan-Man Lin, Yung-I Hou, Trai-Ming Yeh	Molecular Mimicry between SARS Coronavirus Spike Protein and Human Protein.	FBIT	2007	DBLP DOI BibTeX RDF
30	Aaron M. Smalter, Seak Fei Lei, Xue-wen Chen 0001	Human Disease-Gene Classification with Integrative Sequence-Based and Topological Features of Protein-Protein Interaction Networks.	BIBM	2007	DBLP DOI BibTeX RDF
30	Hiroshi Yamakawa, Koji Maruhashi, Yoshio Nakao	Predicting Types of Protein-Protein Interactions Using a Multiple-Instance Learning Model.	JSAI	2006	DBLP DOI BibTeX RDF
30	Suely Oliveira, Sang-Cheol Seok	A Multilevel Approach to Identify Functional Modules in a Yeast Protein-Protein Interaction Network.	International Conference on Computational Science (2)	2006	DBLP DOI BibTeX RDF
30	Kang Ning 0001, Hon Nian Chua	Automated Identification of Protein Classification and Detection of Annotation Errors in Protein Databases Using Statistical Approaches.	KDLL	2006	DBLP DOI BibTeX RDF
30	Qiaofeng Yang, Stefano Lonardi	A Parallel Algorithm for Clustering Protein-Protein Interaction Networks.	CSB Workshops	2005	DBLP DOI BibTeX RDF
30	Filip Ginter, Tapio Pahikkala, Sampo Pyysalo, Jorma Boberg, Jouni Järvinen, Tapio Salakoski	Extracting Protein-Protein Interaction Sentences by Applying Rough Set Data Analysis.	Rough Sets and Current Trends in Computing	2004	DBLP DOI BibTeX RDF
30	Yoojin Chung, Gyeong-Min Kim, Young-Sup Hwang, Hoon Park	Predicting Protein-Protein Interactions from One Feature Using SVM.	IEA/AIE	2004	DBLP DOI BibTeX RDF
30	Roberto Hiroshi Higa, Clésio L. Tozzi	Prediction of Protein-Protein Binding Hot Spots: A Combination of Classifiers Approach.	BSB	2008	DBLP DOI BibTeX RDF	hot spots, binding sites, protein interaction, combination of classifiers
29	Wei Zheng 0009, Karl E. Griswold, Chris Bailey-Kellogg	Protein Fragment Swapping: A Method for Asymmetric, Selective Site-Directed Recombination.	RECOMB	2009	DBLP DOI BibTeX RDF
29	Yaohang Li	A Population-Based Approach for Diversified Protein Loop Structure Sampling.	ICCS (1)	2009	DBLP DOI BibTeX RDF
29	Luca Miceli, Luigi Palopoli 0001, Simona E. Rombo, Giorgio Terracina, Giuseppe Tradigo, Pierangelo Veltri	Experimental Evaluation of Protein Secondary Structure Predictors.	ICCS (1)	2009	DBLP DOI BibTeX RDF
29	Dariusz Mrozek, Bozena Malysiak-Mrozek, Stanislaw Kozielski	Protein Comparison by the Alignment of Fuzzy Energy Signatures.	RSKT	2009	DBLP DOI BibTeX RDF
29	Marta Gîrdea, Laurent Noé, Gregory Kucherov	Back-Translation for Discovering Distant Protein Homologies.	WABI	2009	DBLP DOI BibTeX RDF
29	Corban G. Rivera, T. M. Murali 0001	Identifying Evolutionarily Conserved Protein Interaction Modules Using GraphHopper.	BICoB	2009	DBLP DOI BibTeX RDF
29	Georgina Mirceva, Andrea Kulakov, Danco Davcev	SGNG Protein Classifier by Matching 3D Structures.	HAIS	2009	DBLP DOI BibTeX RDF
29	Peggy Yao, Ankur Dhanik, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe, Inbal Halperin-Landsberg, Russ B. Altman	Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	Robotics, Biology and genetics
29	Vijayaraj Nagarajan, Mohamed O. Elasri	Case Study: Structure and Function Prediction of a Protein with No Functionally Characterized Homolog.	Computational Intelligence in Biomedicine and Bioinformatics	2008	DBLP DOI BibTeX RDF
29	Jing Zhang 0012, Xin Gao 0001, Jinbo Xu, Ming Li 0001	Rapid and Accurate Protein Side Chain Prediction with Local Backbone Information.	RECOMB	2008	DBLP DOI BibTeX RDF	side chain prediction, local backbone features, multiclass Support Vector Machines
29	Mustafa Kirac, Gultekin Özsoyoglu	Protein Function Prediction Based on Patterns in Biological Networks.	RECOMB	2008	DBLP DOI BibTeX RDF
29	Ioannis K. Valavanis, George M. Spyrou, Konstantina S. Nikita	Protein similarity networks and Genetic Algorithm driven feature selection for fold recognition.	BIBE	2008	DBLP DOI BibTeX RDF
29	Raimon Massanet, Pere Caminal, Alexandre Perera	Use of Gene Ontology semantic information in protein interaction data visualization.	BIBE	2008	DBLP DOI BibTeX RDF
29	Young Bun Kim, Jean Gao, Johanne V. Pastor, Kevin P. Rosenblatt	Signaling biomarker pattern discovery using reverse phase protein microarray.	BIBE	2008	DBLP DOI BibTeX RDF
29	Qi-Peng Li, Shao-Wu Zhang 0001, Quan Pan 0001	Using Multi-scale Glide Zoom Window Feature Extraction Approach to Predict Protein Homo-oligomer Types.	PRIB	2008	DBLP DOI BibTeX RDF	Multi-scale glide zoom window, pseudo amino acid compositions, homo-oligomer, feature extraction
29	Min Li 0007, Jianxin Wang 0001, Jianer Chen	A Fast Agglomerate Algorithm for Mining Functional Modules in Protein Interaction Networks.	BMEI (1)	2008	DBLP DOI BibTeX RDF
29	Pei-Ying Zhao, Yong-Sheng Ding	Prediction of Membrane Protein Types by an Ensemble Classifier Based on Pseudo Amino Acid Composition and Approximate Entropy.	BMEI (1)	2008	DBLP DOI BibTeX RDF
29	Jianzhong Chen, Lawrence A. Kelley, Stephen H. Muggleton, Michael J. E. Sternberg	Protein Fold Discovery Using Stochastic Logic Programs.	Probabilistic Inductive Logic Programming	2008	DBLP DOI BibTeX RDF
29	Qingguo Wang, Yi Shang, Dong Xu 0002	A new clustering-based method for protein structure selection.	IJCNN	2008	DBLP DOI BibTeX RDF
29	Eduardo P. Costa, Ana Carolina Lorena, André C. P. L. F. de Carvalho, Alex Alves Freitas	Top-Down Hierarchical Ensembles of Classifiers for Predicting G-Protein-Coupled-Receptor Functions.	BSB	2008	DBLP DOI BibTeX RDF
29	Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das 0001	A Computationally Fast and Parametric Model to Estimate Protein-Ligand Docking Time for Stochastic Event Based Simulation.	Trans. Comp. Sys. Biology	2007	DBLP DOI BibTeX RDF
29	Wenyuan Li 0005, Ying Liu 0007, Hung-Chung Huang, Yanxiong Peng, Yongjing Lin, Wee Keong Ng, Kok-Leong Ong	Dynamical Systems for Discovering Protein Complexes and Functional Modules from Biological Networks.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF	bioinformatics databases, evolutionary computing, Graph algorithms, neural nets
29	Alejandro Balbín, Eugenio Andrade	Designing a Methodology to Estimate Complexity of Protein Structures.	ECAL	2007	DBLP DOI BibTeX RDF
29	Rohit Singh 0001, Jinbo Xu, Bonnie Berger	Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology.	RECOMB	2007	DBLP DOI BibTeX RDF
29	David J. John, Jacquelyn S. Fetrow, James L. Norris	Metropolis-Hastings Algorithm and Continuous Regression for finding Next-State Models of Protein Modification using Information Scores.	BIBE	2007	DBLP DOI BibTeX RDF
29	Lisa M. Guntly, Jennifer L. Leopold, Anne M. Maglia	Determining Domain Similarity and Domain-Protein Similarity Using Functional Similarity Measurements of Gene Ontology Terms.	BIBE	2007	DBLP DOI BibTeX RDF
29	Valerio Freschi	Protein function prediction from interaction networks using a random walk ranking algorithm.	BIBE	2007	DBLP DOI BibTeX RDF
29	Somasheker Akkaladevi, Ajay K. Katangur	Protein Secondary Structure Prediction using Bayesian Inference method on Decision fusion algorithms.	IPDPS	2007	DBLP DOI BibTeX RDF
29	Alexandru-Adrian Tantar, Nouredine Melab, El-Ghazali Talbi	A Comparative Study of Parallel Metaheuristics for Protein Structure Prediction on the Computational Grid.	IPDPS	2007	DBLP DOI BibTeX RDF
29	Gennady Verkhivker	Computational Proteomics of Biomolecular Interactions in Sequence and Structure Space of the Tyrosine Kinome: Evolutionary Constraints and Protein Conformational Selection Determine Binding Signatures of Cancer Drugs.	WILF	2007	DBLP DOI BibTeX RDF
29	Dariusz Mrozek, Bozena Malysiak, Wojciech Augustyn	Agent-Supported Protein Structure Similarity Searching.	PRIMA	2007	DBLP DOI BibTeX RDF
29	Jee-Hyub Kim, Melanie Hilario	Learning Relations and Information Extraction Rules for Protein Annotation.	AINA Workshops (1)	2007	DBLP DOI BibTeX RDF
29	Evgeni Tsivtsivadze, Jorma Boberg, Tapio Salakoski	Locality Kernels for Protein Classification.	WABI	2007	DBLP DOI BibTeX RDF
29	Elisa Cilia, Alessandro Moschitti	Advanced Tree-Based Kernels for Protein Classification.	AI*IA	2007	DBLP DOI BibTeX RDF
29	Jyh-Yeong Chang, Jia-Jie Shyu, Yi-Xiang Shi	Fuzzy K-Nearest Neighbor Classifier to Predict Protein Solvent Accessibility.	ICONIP (2)	2007	DBLP DOI BibTeX RDF
29	Rupali Patwardhan, Haixu Tang, Sun Kim, Mehmet M. Dalkilic	An Approximate de Bruijn Graph Approach to Multiple Local Alignment and Motif Discovery in Protein Sequences.	VDMB	2006	DBLP DOI BibTeX RDF	proteins, Motif discovery, de Bruijn graph, local alignment
29	Young-Rae Cho, Woochang Hwang, Aidong Zhang	Identification of Overlapping Functional Modules in Protein Interaction Networks: Information Flow-based Approach.	ICDM Workshops	2006	DBLP DOI BibTeX RDF
29	Hailiang Huang, Lan V. Zhang, Frederick P. Roth, Joel S. Bader	Probabilistic Paths for Protein Complex Inference.	Systems Biology and Computational Proteomics	2006	DBLP DOI BibTeX RDF
29	Zi Huang, Xiaofang Zhou 0001, Heng Tao Shen, Dawei Song 0001	3D Protein Structure Matching by Patch Signatures.	DEXA	2006	DBLP DOI BibTeX RDF
29	Tetsuo Shibuya	Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures.	CPM	2006	DBLP DOI BibTeX RDF
29	Luigi Palopoli 0001, Simona E. Rombo, Giorgio Terracina, Giuseppe Tradigo, Pierangelo Veltri	JSSPrediction: a Framework to Predict Protein Secondary Structures Using Integration.	CBMS	2006	DBLP DOI BibTeX RDF
29	Heidi J. C. Ellis, Susan Fox-Erlich, Timothy O. Martyn, Michael R. Gryk	Development of an Integrated Framework for Protein Structure Determinations: A Logical Data Model for NMR Data Analysis.	ITNG	2006	DBLP DOI BibTeX RDF
29	Shu-Xue Zou, Yanxin Huang, Yan Wang 0028, Chunguang Zhou	Prediction of Protein Domains from Sequence Information Using Support Vector Machines.	ISNN (2)	2006	DBLP DOI BibTeX RDF
29	Mustafa Gök, Çaglar Yilmaz	Hardware Designs for Local Alignment of Protein Sequences.	ISCIS	2006	DBLP DOI BibTeX RDF
29	Luiz Henrique de Campos Merschmann, Alexandre Plastino 0001	HiSP: A Probabilistic Data Mining Technique for Protein Classification.	International Conference on Computational Science (2)	2006	DBLP DOI BibTeX RDF
29	Ricardo M. Czekster, Osmar Norberto de Souza	SimVIZ - A Desktop Virtual Environment for Visualization and Analysis of Protein Multiple Simulation Trajectories.	ICCSA (1)	2006	DBLP DOI BibTeX RDF
29	Alfonso Montuori, Luisa Pugliese, Giovanni Raimondo, Eros Pasero	Feature Selection for Data Driven Prediction of Protein Model Quality.	IJCNN	2006	DBLP DOI BibTeX RDF
29	Yonghui Chen, Kevin D. Reilly, Alan P. Sprague, Zhijie Guan	SEQOPTICS: A Protein Sequence Clustering Method.	IMSCCS (1)	2006	DBLP DOI BibTeX RDF
29	Jean-Charles Boisson, Laetitia Jourdan, El-Ghazali Talbi, Christian Rolando	A Preliminary Work on Evolutionary Identification of Protein Variants and New Proteins on Grids.	AINA (2)	2006	DBLP DOI BibTeX RDF
29	Kathleen Steinhöfel, Alexandros Skaliotis, Andreas Alexander Albrecht	Landscape Analysis for Protein-Folding Simulation in the H-P Model.	WABI	2006	DBLP DOI BibTeX RDF
29	Amund Tveit, Rune Sætre, Astrid Lægreid, Tonje Strommen Steigedal	ProtChew: Automatic Extraction of Protein Names from Biomedical Literature.	ICDE Workshops	2005	DBLP DOI BibTeX RDF
29	Mehmet Koyutürk, Ananth Grama, Wojciech Szpankowski	Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution.	RECOMB	2005	DBLP DOI BibTeX RDF
29	Yan Liu 0002, Jaime G. Carbonell, Peter Weigele, Vanathi Gopalakrishnan	Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition.	RECOMB	2005	DBLP DOI BibTeX RDF
29	Chun-Yuan Lin, Ken-Li Lin, Chuen-Der Huang, Hsiu-Ming Chang 0002, Chiao Yun Yang, Chin-Teng Lin, Chuan Yi Tang, D. Frank Hsu	Feature Selection and Combination Criteria for Improving Predictive Accuracy in Protein Structure Classification.	BIBE	2005	DBLP DOI BibTeX RDF
29	Lukasz A. Kurgan, Leila Homaeian	Prediction of Secondary Protein Structure Content from Primary Sequence Alone - A Feature Selection Based Approach.	MLDM	2005	DBLP DOI BibTeX RDF
29	Daniel Chu, Michael Till, Albert Y. Zomaya	Parallel Ant Colony Optimization for 3D Protein Structure Prediction using the HP Lattice Model.	IPDPS	2005	DBLP DOI BibTeX RDF
29	Jinbo Xu, Feng Jiao, Bonnie Berger	A Tree-Decomposition Approach to Protein Structure Prediction.	CSB	2005	DBLP DOI BibTeX RDF
29	Emily Chia-Yu Su, Allan Lo, Chin-Chin Lin, Fu Chang, Wen-Lian Hsu	A Novel Approach for Prediction of Multi-Labeled Protein Subcellular Localization for Prokaryotic Bacteria.	CSB Workshops	2005	DBLP DOI BibTeX RDF
29	Wen-Ting Lin, Kuen-Pin Wu, Wei-Neng Hung, Yi-Hwa Yian, Yet-Ran Chen, Yu-Ju Chen, Ting-Yi Sung, Wen-Lian Hsu	MassTRAQ: a Fully Automated Tool for iTRAQ-labeled Protein Quantification.	CSB Workshops	2005	DBLP DOI BibTeX RDF
29	Mariko Matsumoto, Yusuke Nonomura, Takenao Ohkawa	Automatic profile extraction based on frequency distribution of atoms for retrieving similar interaction protein.	ISDA	2005	DBLP DOI BibTeX RDF
29	Fan Zhang, Zhicheng Liu, Xia Li 0004, Shaoqi Rao	G Protein Binding Sites Analysis.	FSKD (2)	2005	DBLP DOI BibTeX RDF