Search results for "proteins"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
14	Cuong To, Jiri Vohradsky	Classification of proteomic kinetic patterns using supervised genetic programming.	Congress on Evolutionary Computation	2005	DBLP DOI BibTeX RDF
14	Naotoshi Nakashima, Akimitsu Matsubara, Isao Ono, Norihiko Ono, Shin-ichi Tate	A genetic algorithm taking account of substructures for NMR three-dimensional protein structure determination.	Congress on Evolutionary Computation	2005	DBLP DOI BibTeX RDF
14	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001, Baldev S. Sidhu	Protein Ontology: Vocabulary for Protein Data.	ICITA (1)	2005	DBLP DOI BibTeX RDF	Protein Informatics, Biomedical Systems, Data Integration, Systems Biology, Biomedical Ontologies, Protein Ontology
14	Albert Y. Zomaya	Grid and High Performance Computing: Opportunities for Bioinformatics Research.	HPCC	2005	DBLP DOI BibTeX RDF
14	Edward E. Allen, Jacquelyn S. Fetrow, David J. John, Stan J. Thomas	Heuristics for dependency conjectures in proteomic signaling pathways.	ACM Southeast Regional Conference (1)	2005	DBLP DOI BibTeX RDF	glycolysis regulation, heuristics, computational biology, proteomics, signal transduction
14	Lukasz A. Kurgan, Leila Homaeian	Prediction of Secondary Protein Structure Content from Primary Sequence Alone - A Feature Selection Based Approach.	MLDM	2005	DBLP DOI BibTeX RDF
14	Hai Hu, S. B. Somiari, J. Copper, R. D. Everly, C. Heckman, Rick Jordan, R. Somiari, Jeffrey Hooke, Craig D. Shriver, Michael N. Liebman	Can Circulating Matrix Metalloproteinases Be Predictors of Breast Cancer? A Neural Network Modeling Study.	ICNC (1)	2005	DBLP DOI BibTeX RDF
14	Hans-Peter Kriegel, Alexey Pryakhin, Matthias Schubert	Multi-represented kNN-Classification for Large Class Sets.	DASFAA	2005	DBLP DOI BibTeX RDF	Multi-represented objects, classification, instance based learning, k nearest neighbor classifier
14	Hasan Ogul, Ü. Erkan Mumcuoglu	Discriminative Remote Homology Detection Using Maximal Unique Sequence Matches.	IDA	2005	DBLP DOI BibTeX RDF
14	Tim Hohm, Daniel Hoffmann	A multi-objective evolutionary approach to peptide structure redesign and stabilization.	GECCO	2005	DBLP DOI BibTeX RDF	peptide design, evolutionary algorithm, multi-objective optimization
14	Daniel Barker, Mark Pagel	Predicting functional gene-links from phylogenetic-statistical analyses of whole genomes.	CSB Workshops	2005	DBLP DOI BibTeX RDF
14	K.-H. Chiam, Vipul Bhargava, Gunaretnam Rajagopal	Oscillatory dynamics in the mitogen-activated protein kinase cascade.	CSB Workshops	2005	DBLP DOI BibTeX RDF
14	Doosung Hwang, Ung-Mo Kim, Jaehun Choi, Jeho Park, Jang-Hee Yoo	Predictive Model for Protein Function Using Modular Neural Approach.	ICAPR (1)	2005	DBLP DOI BibTeX RDF
14	Jochen Supper, Pierre Dönnes, Oliver Kohlbacher	Analysis of MHC-Peptide Binding Using Amino Acid Property-Based Decision Rules.	ICAPR (1)	2005	DBLP DOI BibTeX RDF
14	Frederic T. Stahl, Daniel P. Berrar, Cândida G. Silva, R. J. Rodrigues, Rui M. M. Brito, Werner Dubitzky	Grid warehousing of molecular dynamics protein unfolding data.	CCGRID	2005	DBLP DOI BibTeX RDF
14	Jingyi Yang, Jitender S. Deogun, Zhaohui Sun	A New Scheme for Protein Sequence Motif Extraction.	HICSS	2005	DBLP DOI BibTeX RDF
14	Jie Zhang, Xia Li 0004, Wei Jiang 0023, Yanqiu Wang, Chuanxing Li, Qiuju Wang, Shaoqi Rao	A Novel Ensemble Decision Tree Approach for Mining Genes Coding Ion Channels for Cardiopathy Subtype.	FSKD (2)	2005	DBLP DOI BibTeX RDF
14	Fan Zhang, Zhicheng Liu, Xia Li 0004, Shaoqi Rao	G Protein Binding Sites Analysis.	FSKD (2)	2005	DBLP DOI BibTeX RDF
14	Zhong Huang, Yun Li, Xiaohua Hu 0001	SVM Classification to Predict Two Stranded Anti-parallel Coiled Coils based on Protein Sequence Data.	ICCSA (3)	2005	DBLP DOI BibTeX RDF	coiled coil, SOCKET algorithm, protein sequence data, SVM
14	Yan Liu 0002, Eric P. Xing, Jaime G. Carbonell	Predicting protein folds with structural repeats using a chain graph model.	ICML	2005	DBLP DOI BibTeX RDF
14	Francisco Prosdocimi, José Miguel Ortega	Diet as a Pressure on the Amino Acid Content of Proteomes.	BSB	2005	DBLP DOI BibTeX RDF
14	Changhui Yan, Vasant G. Honavar, Drena Dobbs	Identification of interface residues in protease-inhibitor and antigen-antibody complexes: a support vector machine approach.	Neural Comput. Appl.	2004	DBLP DOI BibTeX RDF
14	Elizabeth Eskow, Brett W. Bader, Richard H. Byrd, Silvia N. Crivelli, Teresa Head-Gordon, Vincent Lamberti, Robert B. Schnabel	An optimization approach to the problem of protein structure prediction.	Math. Program.	2004	DBLP DOI BibTeX RDF
14	Michael Wagner 0010, Jaroslaw Meller, Ron Elber	Large-scale linear programming techniques for the design of protein folding potentials.	Math. Program.	2004	DBLP DOI BibTeX RDF	PCx, Linear feasibility, Parallel processing, Linear programming, Protein folding, Interior-point algorithm
14	Christian Jacob 0001, Ian Burleigh	Biomolecular swarms - an agent-based model of the lactose operon.	Nat. Comput.	2004	DBLP DOI BibTeX RDF	agent-based biological modelling, gene regulatory system, lactose operon, simulation, bioinformatics, swarm intelligence
14	Mohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos	Report on BIOKDD04: workshop on data mining in Bioinformatics.	SIGKDD Explor.	2004	DBLP DOI BibTeX RDF
14	Atul Dubey, Gaurav Sharma 0003, Constantinos Mavroidis, Silvina-Maria Tomassone, K. Nikitczuk, Martin L. Yarmush	Dynamics and Kinematics of Viral Protein Linear Nano-actuators for Bio-nano Robotic Systems.	ICRA	2004	DBLP DOI BibTeX RDF
14	David A. Lee, Alastair Grant, Ian Sillitoe, Mark Dibley, Juan Garcia Ranea, Christine A. Orengo	A structural perspective on genome evolution.	RECOMB	2004	DBLP DOI BibTeX RDF
14	Martin Farach-Colton, Yang Huang, John L. L. Woolford	Discovering temporal relations in molecular pathways using protein-protein interactions.	RECOMB	2004	DBLP DOI BibTeX RDF	molecular pathways, probe interval graphs, ribosomal assembly pathway, vertex ordering, interval graphs, protein-protein interaction
14	Yih-En Andrew Ban, Herbert Edelsbrunner, Johannes Rudolph	Interface surfaces for protein-protein complexes.	RECOMB	2004	DBLP DOI BibTeX RDF	geometric and topological algorithms, interface surfaces, voronoi diagrams, filtrations, protein interaction
14	Peter J. Bentley, Jon Timmis	A Fractal Immune Network.	ICARIS	2004	DBLP DOI BibTeX RDF
14	Richard M. Karp	The Role of Experimental Algorithms in Genomics.	WEA	2004	DBLP DOI BibTeX RDF
14	Soon-Heng Tan, Wing-Kin Sung, See-Kiong Ng	Discovering Novel Interacting Motif Pairs from Large Protein-Protein Interaction Datasets.	BIBE	2004	DBLP DOI BibTeX RDF
14	Elke Moritz, Jörg Meyer 0002	Interactive 3D Protein Structure Visualization Using Virtual Reality.	BIBE	2004	DBLP DOI BibTeX RDF
14	Pin-Hao Chi, Grant J. Scott, Chi-Ren Shyu	A Fast Protein Structure Retrieval System Using Image-Based Distance Matrices and Multidimensional Index.	BIBE	2004	DBLP DOI BibTeX RDF
14	Sung-Hee Park, Keun Ho Ryu	Fast Similarity Search for Protein 3D Structure Databases Using Spatial Topological Patterns.	DEXA	2004	DBLP DOI BibTeX RDF
14	Vicky Choi, Navin Goyal	A Combinatorial Shape Matching Algorithm for Rigid Protein Docking.	CPM	2004	DBLP DOI BibTeX RDF
14	Jae-Hong Eom, Jeong Ho Chang, Byoung-Tak Zhang	Prediction of Implicit Protein-Protein Interaction by Optimal Associative Feature Mining.	IDEAL	2004	DBLP DOI BibTeX RDF
14	Anish Alex, Jonathan Rose, Ruth Isserlin-Weinberger, Christopher W. V. Hogue	Hardware Accelerated Novel Protein Identification.	FPL	2004	DBLP DOI BibTeX RDF
14	Mohammed Javeed Zaki, David A. Bader, Johan Montagnat, Concettina Guerra	Topic 17: High Performance Bioinformatics.	Euro-Par	2004	DBLP DOI BibTeX RDF
14	Kristian Rother, Heiko Müller 0001, Silke Trißl, Ina Koch, Thomas Steinke 0001, Robert Preissner, Cornelius Frömmel, Ulf Leser	Columba: Multidimensional Data Integration of Protein Annotations.	DILS	2004	DBLP DOI BibTeX RDF
14	Xiong Liu 0001, Hassan A. Karimi, Lee-Wei Yang, Ivet Bahar	Protein Functional Motion Query and Visualization.	COMPSAC Workshops	2004	DBLP DOI BibTeX RDF
14	Kensaku Sakamoto, Masayuki Yamamura, Hiroshi Someya	Toward "Wet" Implementation of Genetic Algorithm for Protein Engineering.	DNA	2004	DBLP DOI BibTeX RDF
14	Shawna L. Thomas, Nancy M. Amato	Parallel Protein Folding with STAPL.	IPDPS	2004	DBLP DOI BibTeX RDF
14	Emad Y. Ramadan, Arijit Tarafdar, Alex Pothen	A Hypergraph Model for the Yeast Protein Complex Network.	IPDPS	2004	DBLP DOI BibTeX RDF	protein complex network, power-law network, graph core, hypergraph, vertex cover, small-world network
14	Virginie Lefort, Carole Knibbe, Guillaume Beslon, Joël Favrel	A Bio-inspired Genetic Algorithm with a Self-Organizing Genome: The RBF-Gene Model.	GECCO (2)	2004	DBLP DOI BibTeX RDF
14	Hee Young Kang, Hak Yong Kim	Functional Modules from Protein Networks of Kinome and Cell Cycle in Saccharomyces Cerevisiae.	CSB	2004	DBLP DOI BibTeX RDF
14	Yonghua Han, Bin Ma 0002, Kaizhong Zhang	SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error.	CSB	2004	DBLP DOI BibTeX RDF	de novo sequencing, sequence tags, database search, protein identification
14	Jaspreet Singh Sodhi, Liam J. McGuffin, Kevin Bryson, Jonathan J. Ward, Lorenz Wernisch, David T. Jones	Automatic Prediction of Functional Site Regions in Low-Resolution Protein Structures.	CSB	2004	DBLP DOI BibTeX RDF
14	Jonathan J. Ward, Jaspreet Singh Sodhi, Bernard F. Buxton, David T. Jones	Predicting Gene Ontology Annotations from Sequence Data Using Kernel-Based Machine Learning Algorithms.	CSB	2004	DBLP DOI BibTeX RDF
14	Samir V. Deshpande, Rabih E. Jabbour, Charles Wick, A. Peter Snyder	Automated and Rapid Bacterial Identification Using LC-Mass Spectrometry with a Relational Database Management System.	CSB	2004	DBLP DOI BibTeX RDF
14	Fernando A. Fernandes Jr., Rodrigo L. Carceroni, Carlos Eduardo R. Lopes, Wagner Meira Jr., Raquel C. de Melo, Arnaldo de Albuquerque Araújo, Marcelo M. Santoro, Carlos H. Silveira	An Image-Matching Approach to Protein Similarity Analysis.	SIBGRAPI	2004	DBLP DOI BibTeX RDF
14	Min Kyung Kim 0002, Hyun Seok Park, Seon Hee Park	Prediction of Plasma Membrane Spanning Region and Topology Using Hidden Markov Model and Neural Network.	KES	2004	DBLP DOI BibTeX RDF
14	Pawel Mackiewicz, Malgorzata Dudkiewicz, Maria Kowalczuk, Dorota Mackiewicz, Joanna Banaszak, Natalia Polak, Kamila Smolarczyk, Aleksandra Nowicka, Miroslaw R. Dudek, Stanislaw Cebrat	Differential Gene Survival under Asymmetric Directional Mutational Pressure.	International Conference on Computational Science	2004	DBLP DOI BibTeX RDF
14	Daeho Lim, Kyungsook Han	PairAnalyzer: Extracting and Visualizing RNA Structure Elements Formed by Base Pairing.	International Conference on Computational Science	2004	DBLP DOI BibTeX RDF
14	Eric P. G. Martin, Eric G. Bremer, Marie-Claude Guerin, Catherine DeSesa, Olivier Jouve	Analysis of Protein/Protein Interactions Through Biomedical Literature: Text Mining of Abstracts vs. Text Mining of Full Text Articles.	KELSI	2004	DBLP DOI BibTeX RDF
14	Thomas Herges, Alexander Schug, Wolfgang Wenzel	Protein Structure Prediction with Stochastic Optimization Methods: Folding and Misfolding the Villin Headpiece.	ICCSA (3)	2004	DBLP DOI BibTeX RDF
14	Lev Soinov, Alexander Kanapin, Misha Kapushesky	Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation.	WABI	2004	DBLP DOI BibTeX RDF
14	Vicky Choi, Pankaj K. Agarwal, Herbert Edelsbrunner, Johannes Rudolph	Local Search Heuristic for Rigid Protein Docking.	WABI	2004	DBLP DOI BibTeX RDF
14	Jens Gramm	A Polynomial-Time Algorithm for the Matching of Crossing Contact-Map Patterns.	WABI	2004	DBLP DOI BibTeX RDF
14	Stanislav Angelov, Sanjeev Khanna, Li Li, Fernando Pereira	ATDD: An Algorithmic Tool for Domain Discovery in Protein Sequences.	WABI	2004	DBLP DOI BibTeX RDF
14	Yoojin Chung, Gyeong-Min Kim, Young-Sup Hwang, Hoon Park	Predicting Protein-Protein Interactions from One Feature Using SVM.	IEA/AIE	2004	DBLP DOI BibTeX RDF
14	Jung-Ja Kim, Young-Ho Kim, Yonggwan Won	Proteomic Pattern Classification Using Bio-markers for Prostate Cancer Diagnosis.	CIS	2004	DBLP DOI BibTeX RDF
14	Chin-Teng Lin, Ken-Li Lin, Chih-Hsien Yang, I-Fang Chung, Chuen-Der Huang, Yuh-Shyong Yang	Protein Metal Binding Residue Prediction Based on Neural Networks.	ICONIP	2004	DBLP DOI BibTeX RDF
14	Alessio Ceroni, Paolo Frasconi, Andrea Passerini, Alessandro Vullo	Predicting the Disulfide Bonding State of Cysteines with Combinations of Kernel Machines.	J. VLSI Signal Process.	2003	DBLP DOI BibTeX RDF	bonding state of cysteines, structural genomics, machine learning, kernel machines
14	Peter J. Bentley	Evolving Fractal Gene Regulatory Networks for Robot Control.	ECAL	2003	DBLP DOI BibTeX RDF
14	Dieter Oesterhelt	Biology and bioinformatics of halophilism.	RECOMB	2003	DBLP DOI BibTeX RDF
14	Christopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald	Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments.	RECOMB	2003	DBLP DOI BibTeX RDF
14	Arthur M. Lesk	Invited: Prediction of protein function.	RECOMB	2003	DBLP DOI BibTeX RDF
14	Edward N. Trifonov	Poetry and prose of the sequences.	RECOMB	2003	DBLP DOI BibTeX RDF
14	Vicente Arnau, Ignacio Marín 0001	A Hierarchical Clustering Strategy and Its Application to Proteomic Interaction Data.	IbPRIA	2003	DBLP DOI BibTeX RDF
14	Yueyu Fu, Javed Mostafa, Kazuhiro Seki	Protein Association Discovery in Biomedical Literature.	JCDL	2003	DBLP DOI BibTeX RDF
14	Yu Chen, Trupti Joshi, Ying Xu 0001, Dong Xu 0002	Towards Automated Derivation of Biological Pathways Using High-Throughput Biological Data.	BIBE	2003	DBLP DOI BibTeX RDF
14	Doosung Hwang, Farshad Fotouhi, Russell L. Finley Jr., William I. Grosky	Predictive Model for Yeast Protein Functions Using Modular Neural Approach.	BIBE	2003	DBLP DOI BibTeX RDF
14	Richard Eibrand, Paul E. Kennedy, Deirdre Cotter, Ursula MacEvilly, Bing Wu	Analysis of Atlantic Salmon Skin Mucus: COPS - A Computer-Based System for Protein Pattern Analysis of 1D SDS-PAGE Gels.	BIBE	2003	DBLP DOI BibTeX RDF
14	Gareth Hannaford, Carsten Maple	Determining Candidate Binding Site Locations Using Conserved Features.	IV	2003	DBLP DOI BibTeX RDF
14	Martin Persson, Josef Bigün	Protein Spot Detection by Symmetry Derivatives of Gaussians.	SCIA	2003	DBLP DOI BibTeX RDF
14	Zeyar Aung, Wei Fu, Kian-Lee Tan	An Efficient Index-based Protein Structure Database Searching Method.	DASFAA	2003	DBLP DOI BibTeX RDF
14	Christopher James Langmead, Bruce Randall Donald	3D Structural Homology Detection via Unassigned Residual Dipolar Couplings.	CSB	2003	DBLP DOI BibTeX RDF
14	Xiang Wan, Dong Xu 0002, Carolyn M. Slupsky, Guohui Lin	Automated Protein NMR Resonance Assignments.	CSB	2003	DBLP DOI BibTeX RDF
14	Andriy Kryshtafovych, Torgeir R. Hvidsten, Henryk Jan Komorowski, Krzysztof Fidelis	Fold Recognition Using Sequence Fingerprints of Protein Local Substructures.	CSB	2003	DBLP DOI BibTeX RDF
14	Angela Hodge-Miller, F. Keith Perkins, Martin Peckerar, Stephanie Fertig, Leonard Tender	Gateless depletion mode field effect transistor for macromolecule sensing.	ISCAS (3)	2003	DBLP DOI BibTeX RDF
14	Ilias Tagkopoulos, Charles A. Zukowski, German Cavelier, Dimitris Anastassiou	A custom FPGA for the simulation of gene regulatory networks.	ACM Great Lakes Symposium on VLSI	2003	DBLP DOI BibTeX RDF	custom mixed signal FPGA, genetic pathways, gene regulatory networks
14	Frank B. Sachse, K. G. Glänzel, Gunnar Seemann	Modeling of Electro-Mechanical Coupling in Cardiac Myocytes: Feedback Mechanisms and Cooperativity.	FIMH	2003	DBLP DOI BibTeX RDF
14	N. Rattanakronkul, T. Wattarujeekrit, Kitsana Waiyamai	Predicting Protein Structural Class from Closed Protein Sequences.	PAKDD	2003	DBLP DOI BibTeX RDF	Protein Structural Class, Closed Sequence, Data Mining, Bioinformatics, CARs
14	John W. Romein, Jaap Heringa, Henri E. Bal	A Million-Fold Speed Improvement in Genomic Repeats Detection.	SC	2003	DBLP DOI BibTeX RDF
14	I-Fang Chung, Chuen-Der Huang, Ya-Hsin Shen, Chin-Teng Lin	Recognition of Structure Classification of Protein Folding by NN and SVM Hierarchical Learning Architecture.	ICANN	2003	DBLP DOI BibTeX RDF
14	Ana Carolina Lorena, André Carlos Ponce de Leon Ferreira de Carvalho	Human Splice Site Identification with Multiclass Support Vector Machines and Bagging.	ICANN	2003	DBLP DOI BibTeX RDF
14	Olaf Weiss, Andreas Ziehe, Hanspeter Herzel	Optimizing Property Codes in Protein Data Reveals Structural Characteristics.	ICANN	2003	DBLP DOI BibTeX RDF
14	Xiong Wang, Jason Tsong-Li Wang, Dennis E. Shasha, Bruce A. Shapiro, Isidore Rigoutsos, Kaizhong Zhang	Finding Patterns in Three-Dimensional Graphs: Algorithms and Applications to Scientific Data Mining.	IEEE Trans. Knowl. Data Eng.	2002	DBLP DOI BibTeX RDF	classification and clustering, structural pattern discovery, biochemistry, data mining, KDD, medicine, geometric hashing
14	Natalio Krasnogor, B. P. Blackburne, Edmund K. Burke, Jonathan D. Hirst	Multimeme Algorithms for Protein Structure Prediction.	PPSN	2002	DBLP DOI BibTeX RDF
14	Brendan Mumey, Brian W. Bailey, Edward A. Dratz	Revealing protein structures: a new method for mapping antibody epitopes.	RECOMB	2002	DBLP DOI BibTeX RDF
14	Miguel L. Teodoro, George N. Phillips, Lydia E. Kavraki	A dimensionality reduction approach to modeling protein flexibility.	RECOMB	2002	DBLP DOI BibTeX RDF
14	Barry Cohen, Steven Skiena	Designing RNA structures: natural and artificial selection.	RECOMB	2002	DBLP DOI BibTeX RDF
14	Meel Velliste, Robert F. Murphy	Automated determination of protein subcellular locations from 3D fluorescence microscope images.	ISBI	2002	DBLP DOI BibTeX RDF
14	Minh Ngoc Nguyen 0002, Jagath C. Rajapakse, Loi Sy Ho	Combining GOR techniques with support vector machines for protein secondary structure prediction.	ICARCV	2002	DBLP DOI BibTeX RDF
14	Minghua Deng, Kui Zhang, Shipra Mehta, Ting Chen 0006, Fengzhu Sun	Prediction of Protein Function Using Protein-Protein Interaction Data.	CSB	2002	DBLP DOI BibTeX RDF
14	Baohong Zhang, Adam Godzik	The Meaning and Limitations of Protein Structure Alignments.	3DPVT	2002	DBLP DOI BibTeX RDF
14	Christian N. S. Pedersen, Tejs Scharling	Comparative Methods for Gene Structure Prediction in Homologous Sequences.	WABI	2002	DBLP DOI BibTeX RDF
14	Yonatan Bilu, Michal Linial	On the predictive power of sequence similarity in yeast.	RECOMB	2001	DBLP DOI BibTeX RDF