Search results for "DNA"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
26	Gheorghe Paun	(DNA) computing by carving.	Soft Comput.	1999	DBLP DOI BibTeX RDF	Chomskyhierarchy, approximation of languages, DNA computing, complementation
25	Darren M. Platt, Trevor I. Dix	A model for comparing genomic restriction maps.	HICSS (5)	1995	DBLP DOI BibTeX RDF	genomic restriction map comparison, genetic physical maps, genomic extracts, plausible maps, minimum message length principles, fragment length data, clone fingerprinting, sequence tagged sites, map structure, mapping program, error parameters, mapping process, uncertainties, statistical analysis, errors, DNA, DNA, genetics, biology computing, objective function, optimal solution
25	Bingzhe Li, Li Ou, Bo Yuan 0001, David H. C. Du	DP-DNA: A Digital Pattern-Aware DNA Encoding Scheme to Improve Encoding Density of DNA Storage.	MASCOTS	2023	DBLP DOI BibTeX RDF
25	Lingyan Wang, Kun Xi, Lizhe Zhu, Lin-Tai Da	DNA Deformation Exerted by Regulatory DNA-Binding Motifs in Human Alkyladenine DNA Glycosylase Promotes Base Flipping.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
25	Timothy Warwick, Sandra Seredinski, Nina M. Krause, Jasleen Kaur Bains, Lara Althaus, James A Oo, Alessandro Bonetti, Anne Dueck, Stefan Engelhardt, Harald Schwalbe, Matthias S. Leisegang, Marcel H. Schulz, Ralf P. Brandes	A universal model of RNA.DNA: DNA triplex formation accurately predicts genome-wide RNA-DNA interactions.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
25	Tatjana Kulikova, Anna Porfireva, Gennady Evtugyn, Tibor Hianik	Electrochemical DNA Sensors with Layered Polyaniline - DNA Coating for Detection of Specific DNA Interactions.	Sensors	2019	DBLP DOI BibTeX RDF
25	Asuka Kikuchi, Tomonori Kawano	Discrete Biochemistry of DNA: Arithmetic DNA Molecules for Binary Additions, Naturally Found Genetic Logic Circuits for Plant Sensing, and DNA-Based Animation.	J. Adv. Comput. Intell. Intell. Informatics	2016	DBLP DOI BibTeX RDF
25	Gi-sung Joo, You-Cheol Jang, Kamrul Islam, Yong-Sang Kim	Detection of DNA at the Microchip - Study of DNA Detection Microchip by Oxidation Peak of DNA.	BIODEVICES	2010	DBLP BibTeX RDF
25	Stephen Winters-Hilt, Amanda Davis, Iftekhar Amin, Eric Morales	Nanopore current transduction analysis of protein binding to non-terminal and terminal DNA regions: analysis of transcription factor binding, retroviral DNA terminus dynamics, and retroviral integrase-DNA binding.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
25	Pierre Baldi, Richard H. Lathrop	DNA Structure, Protein-DNA Interactions, and DNA-Protein Expression - Session Introduction.	Pacific Symposium on Biocomputing	2001	DBLP BibTeX RDF
25	Joachim Burger	Sequenzierung, RFLP-Analyse und STR-Genotypisierung alter DNA aus archäologischen Funden und historischen Werkstoffen (DNA-sequencing, RFLP-analysis, and STR-genotyping of ancient DNA from archaeological finds and historic artefacts)		2001	RDF
25	A. Nordheim, K. Meese	Topoisomer gel retardation: detection of anti-Z-DNA antibodies bound to Z-DNA within supercoiled DNA minicircles.	Nucleic Acids Res.	1988	DBLP DOI BibTeX RDF
25	Werner Müller, Iolanda Hattesohl, Hans-Jürgen Schuetz, Georg Meyer	Polyethylene glycol derivatives of base and sequence specific DNA ligands: DNA interaction and application for base specific separation of DNA fragments by gel electrophoresis.	Nucleic Acids Res.	1981	DBLP DOI BibTeX RDF
25	Erik Winfree, David K. Gifford (eds.)	DNA Based Computers, Proceedings of a DIMACS Workshop, New Brunswick, New Jersey, USA, June 14-15, 1999	DNA Based Computers	2000	DBLP DOI BibTeX RDF
25	Harvey Rubin, David Harlan Wood (eds.)	DNA Based Computers, Proceedings of a DIMACS Workshop, Philadelphia, Pennsylvania, USA, June 23-25, 1997	DNA Based Computers	1999	DBLP DOI BibTeX RDF
25	Laura F. Landweber, Eric B. Baum (eds.)	DNA Based Computers, Proceedings of a DIMACS Workshop, Princeton, New Jersey, USA, June 10-12, 1996	DNA Based Computers	1999	DBLP DOI BibTeX RDF
25	Lila Kari, Laura F. Landweber	Computational power of gene rearrangement.	DNA Based Computers	1999	DBLP DOI BibTeX RDF
25	Brian Bloom, F. Carter Bancroft	Liposome mediated biomolecular computation.	DNA Based Computers	1999	DBLP DOI BibTeX RDF
25	Andrzej Ehrenfeucht, Hendrik Jan Hoogeboom, Grzegorz Rozenberg, Nike van Vugt	Forbidding and enforcing.	DNA Based Computers	1999	DBLP DOI BibTeX RDF
25	Michael P. Robertson, Jay R. Hesselberth, J. Colin Cox, Andrew D. Ellington	Designing and selecting components for nucleic acid computers.	DNA Based Computers	1999	DBLP DOI BibTeX RDF
25	Hiroshi Yoshida, Akira Suyama	Solution to 3-SAT by breadth first search.	DNA Based Computers	1999	DBLP DOI BibTeX RDF
25	Takashi Yokomori	YAC: Yet another computation model of self-assembly.	DNA Based Computers	1999	DBLP DOI BibTeX RDF
25	Alexander J. Hartemink, Tarjei S. Mikkelsen, David K. Gifford	Simulating biological reactions: A modular approach.	DNA Based Computers	1999	DBLP DOI BibTeX RDF
25		Foreword.	DNA Based Computers	1999	DBLP BibTeX RDF
25		Introduction.	DNA Based Computers	1999	DBLP BibTeX RDF
25	Max H. Garzon, Russell J. Deaton, John A. Rose	Soft molecular computing.	DNA Based Computers	1999	DBLP DOI BibTeX RDF
25	Dirk Faulhammer, Anthony R. Cukras, Richard J. Lipton, Laura F. Landweber	When the Knight falls: On constructing an RNA computer.	DNA Based Computers	1999	DBLP DOI BibTeX RDF
25	Gheorghe Paun, Takashi Yokomori	Membrane computing based on splicing.	DNA Based Computers	1999	DBLP DOI BibTeX RDF
25	Elizabeth Laun, Kalluru J. Reddy	Wet splicing systems.	DNA Based Computers	1997	DBLP DOI BibTeX RDF
25	Masami Hagiya, Masanori Arita, Daisuke Kiga, Kensaku Sakamoto, Shigeyuki Yokoyama	Towards parallel evaluation and learning of Boolean μ-formulas with molecules.	DNA Based Computers	1997	DBLP DOI BibTeX RDF
25	Yasubumi Sakakibara, Claudio Ferretti	Splicing on tree-like structures.	DNA Based Computers	1997	DBLP DOI BibTeX RDF
25	Rudolf Freund, Gheorghe Paun, Grzegorz Rozenberg, Arto Salomaa	Watson-Crick finite automata.	DNA Based Computers	1997	DBLP DOI BibTeX RDF
25	Aviezri S. Fraenkel	Protein folding, spin glass and computational complexity.	DNA Based Computers	1997	DBLP DOI BibTeX RDF
25	Laura F. Landweber, Richard J. Lipton, Michael O. Rabin	DNA2DNA computations: A potential "killer app?".	DNA Based Computers	1997	DBLP DOI BibTeX RDF
25	James G. Wetmur	Physical chemistry of nucleic acid hybridization.	DNA Based Computers	1997	DBLP DOI BibTeX RDF
25	John H. Reif	Local parallel biomolecular computation.	DNA Based Computers	1997	DBLP DOI BibTeX RDF
25		Foreword.	DNA Based Computers	1997	DBLP BibTeX RDF
25		Preface.	DNA Based Computers	1997	DBLP BibTeX RDF
25	Bin Fu, Richard Beigel	On molecular approximation algorithms for NP optimization problem.	DNA Based Computers	1997	DBLP DOI BibTeX RDF
25		Foreword.	DNA Based Computers	1996	DBLP BibTeX RDF
25	Laura F. Landweber	RNA based computing: Some examples from RNA catalysis and RNA editing.	DNA Based Computers	1996	DBLP DOI BibTeX RDF
25		Introduction.	DNA Based Computers	1996	DBLP BibTeX RDF
25	Robert M. Williams, David Harlan Wood	Exascale computer algebra problems interconnect with molecular reactions and complexity theory.	DNA Based Computers	1996	DBLP DOI BibTeX RDF
25	Leonard M. Adleman, Paul W. K. Rothemund, Sam T. Roweis, Erik Winfree	On applying molecular computation to the data encryption standard.	DNA Based Computers	1996	DBLP DOI BibTeX RDF
25	Stuart A. Kurtz, Stephen R. Mahaney, James S. Royer, Janos Simon	Active transport in biological computing.	DNA Based Computers	1996	DBLP DOI BibTeX RDF
25		Acknowledgements.	DNA Based Computers	1996	DBLP BibTeX RDF
25	Natasa Jonoska, Stephen A. Karl	A molecular computation of the road coloring problem.	DNA Based Computers	1996	DBLP DOI BibTeX RDF
25	Richard J. Lipton, Eric B. Baum (eds.)	DNA Based Computers, Proceedings of a DIMACS Workshop, Princeton, New Jersey, USA, April 4, 1995	DNA Based Computers	1995	DBLP DOI BibTeX RDF
25	Leonard M. Adleman	On constructing a molecular computer.	DNA Based Computers	1995	DBLP DOI BibTeX RDF
25		Introduction.	DNA Based Computers	1995	DBLP BibTeX RDF
25	Dan Boneh, Christopher Dunworth, Richard J. Lipton	Breaking DES using a molecular computer.	DNA Based Computers	1995	DBLP DOI BibTeX RDF
25		Foreward.	DNA Based Computers	1995	DBLP BibTeX RDF
25	Erik Winfree	Complexity of restricted and unrestricted models of molecular computation.	DNA Based Computers	1995	DBLP DOI BibTeX RDF
25	Donald Beaver	A universal molecular computer.	DNA Based Computers	1995	DBLP DOI BibTeX RDF
25	Richard J. Lipton	Speeding up computations via molecular biology.	DNA Based Computers	1995	DBLP DOI BibTeX RDF
25	Mostafa Mostafa Hashim Ellabaan	Complement-Based Self-Replicated, Self-Assembled Systems (CBSRSAS).	ACAL	2007	DBLP DOI BibTeX RDF	simulation, self-organization, artificial life, DNA, Self-assembly, Self-replication, Wang Tiles
25	Jaidev P. Patwardhan, Chris Dwyer, Alvin R. Lebeck, Daniel J. Sorin	NANA: A nano-scale active network architecture.	ACM J. Emerg. Technol. Comput. Syst.	2006	DBLP DOI BibTeX RDF	Accumulator ISA, defect isolation, reverse path forwarding, active network, DNA, defect tolerance, self-assembly, carbon nanotube, nanoelectronics, nanocomputing
25	E. V. Krishnamurthy, Venu K. Murthy, Vikram Krishnamurthy	Biologically inspired rule-based multiset programming paradigm for soft-computing.	Conf. Computing Frontiers	2004	DBLP DOI BibTeX RDF	biologically-inspired paradigm, closed and open systems, first and second order logic, genetic and molecular computing, probabilistic rule based paradigm, soft computing, DNA
24	Dimitris Margaritis 0001, Steven Skiena	Reconstructing Strings from Substrings in Rounds.	FOCS	1995	DBLP DOI BibTeX RDF	string reconstruction, combinatorial bounds, substring queries, sequencing by hybridization, oligonucleotides, de novo sequencing, large DNA fragments, SBH, interaction, parallelism, pattern matching, string matching, DNA, biology computing, rounds, substrings
24	Sara Nasser, Adrienne Breland, Frederick C. Harris Jr., Monica N. Nicolescu, Gregory Vert	Fuzzy Genome Sequence Assembly for Single and Environmental Genomes.	Fuzzy Systems in Bioinformatics and Computational Biology	2009	DBLP DOI BibTeX RDF
24	Zheng Li, Ahalapitiya H. Jayatissa, Lash Mapa, Ezzatollah Salari, A. C. Jayasuriya	Electrochemical sensors for detection of biomolecules.	EIT	2009	DBLP DOI BibTeX RDF
24	Sheng-Lung Peng, Yu-Wei Tsay	Verification of Pathotyping by Quasispecies Model.	ICIC (1)	2009	DBLP DOI BibTeX RDF
24	Marta Gîrdea, Laurent Noé, Gregory Kucherov	Back-Translation for Discovering Distant Protein Homologies.	WABI	2009	DBLP DOI BibTeX RDF
24	Richard B. Fair, Andrey Khlystov, Tina D. Tailor, Vladislav Ivanov, Randall D. Evans, Vijay Srinivasan, Vamsee K. Pamula, Michael G. Pollack, Peter B. Griffin, Jack Zhou	Chemical and Biological Applications of Digital-Microfluidic Devices.	IEEE Des. Test Comput.	2007	DBLP DOI BibTeX RDF	digital microfluidics, sample collection, electrowetting, analysis, detection, lab on a chip
24	Gianni Medoro, Roberto Guerrieri, Nicolò Manaresi, Claudio Nastruzzi, Roberto Gambari	Lab on a Chip for Live-Cell Manipulation.	IEEE Des. Test Comput.	2007	DBLP DOI BibTeX RDF	dielectrophoresis, cell manipulation, nanoparticles, lab on a chip
24	Guo-Cheng Yuan, Jun S. Liu	Statistial Analysis of nucleosome occupancy and histone modification data.	BIBE	2007	DBLP DOI BibTeX RDF
24	Faraz Rasheed, Mohammed Al-Shalalfa, Reda Alhajj	Adapting Machine Learning Technique for Periodicity Detection in Nucleosomal Locations in Sequences.	IDEAL	2007	DBLP DOI BibTeX RDF
24	Haris Vikalo, Babak Hassibi, Arjang Hassibi	A statistical model for microarrays, optimal estimation algorithms, and limits of performance.	IEEE Trans. Signal Process.	2006	DBLP DOI BibTeX RDF
24	Derong Liu 0001, Xiaoxu Xiong, Bhaskar DasGupta, Huaguang Zhang	Motif discoveries in unaligned molecular sequences using self-organizing neural networks.	IEEE Trans. Neural Networks	2006	DBLP DOI BibTeX RDF
24	Perry Evans, Greg Donahue, Sridhar Hannenhalli	Conservation Patterns in cis-Elements Reveal Compensatory Mutations.	Comparative Genomics	2006	DBLP DOI BibTeX RDF
24	Don Jyh-Fu Jeng, Ikno Kim, Junzo Watada	Bio-Soft Computing Approach to Elevator Dispatching Problem.	ICICIC (1)	2006	DBLP DOI BibTeX RDF
24	Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli	An Interaction-Dependent Model for Transcription Factor Binding.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
24	Sean Luke	Evolutionary computation and the c-value paradox.	GECCO	2005	DBLP DOI BibTeX RDF	C-value paradox, evolutionary genetics, theoretical biology, genetic programming, code bloat
24	Ho-Lin Chen, Qi Cheng 0001, Ashish Goel, Ming-Deh A. Huang, Pablo Moisset de Espanés	Invadable self-assembly: combining robustness with efficiency.	SODA	2004	DBLP BibTeX RDF
24	Romesh M. Ranawana, Vasile Palade	MultiNNProm: A Multi-Classifier System for Finding Genes.	WSC	2004	DBLP DOI BibTeX RDF
24	Mingen Lin, Jinhui Xu 0001, Sambit Bhattacharya, Ronald Berezney	Surface approximation based image simplification and applications.	SMC (3)	2004	DBLP DOI BibTeX RDF
24	Brona Brejová, Daniel G. Brown 0001, Tomás Vinar	Optimal Spaced Seeds for Hidden Markov Models, with Application to Homologous Coding Regions.	CPM	2003	DBLP DOI BibTeX RDF
24	Julia Khodor, David K. Gifford	Programmed Mutagenesis Is Universal.	Theory Comput. Syst.	2002	DBLP DOI BibTeX RDF
24	Yong-Sheng Chen, Yi-Ping Hung, Chiou-Shann Fuh	Fast Semi-Local Alignment for DN Sequence Database Search.	ICPR (3)	2002	DBLP DOI BibTeX RDF
24	Eiji Nakamura, Tatsuto Murayama, Katsutoshi Sawada, Hisato Okuizumi	RLGS profile segmentation via a SVM.	ICIP (1)	2001	DBLP DOI BibTeX RDF
24	Ron Shamir, Dekel Tsur	Large scale sequencing by hybridization.	RECOMB	2001	DBLP DOI BibTeX RDF
24	Martin Farach, Sampath Kannan	Efficient Algorithms for Inverting Evolution.	J. ACM	1999	DBLP DOI BibTeX RDF
24	Mark Daley, Lila Kari, Greg Gloor, Rani Siromoney	Circular Contextual Insertions/Deletions with Applications to Biomolecular Computation.	SPIRE/CRIWG	1999	DBLP DOI BibTeX RDF
24	Bin Yang, Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Jing-Chi Chen, Francis Y. L. Chin	Unsupervised binning of environmental genomic fragments based on an error robust selection of l-mers.	DTMBIO	2009	DBLP DOI BibTeX RDF	dna composition features, k-mer, modified chebychev distance, k-mean clustering, metagenomics, binning
24	Michael Domaratzki	Equivalence in template-guided recombination.	Nat. Comput.	2008	DBLP DOI BibTeX RDF	Template-guided recombination, DNA recombination, Equivalence, Ciliates
24	Jizhen Zhao, Dongsheng Che, Liming Cai	Comparative Pathway Prediction Via Unified Graph Modeling of Genomic Structure Information.	ISBRA	2007	DBLP DOI BibTeX RDF	Pathway prediction, protein-DNA interaction, operon, independent set, clique, tree decomposition
24	Liang Chen, Hongyu Zhao	Integrating mRNA Decay Information into Co-Regulation Study.	J. Comput. Sci. Technol.	2005	DBLP DOI BibTeX RDF	mRNA decay rate, transcription rate, transcript amount, DNA binding motif, microarray
24	Óscar Coltell, Miguel Arregui, Larry Parnell, Dolores Corella, Ricardo Chalmeta, José M. Ordovás	SEQPACKER: A Biologist-Friendly User Interface to Manipulate Nucleotide Sequences in Genomic Epidemiology.	ISBMDA	2004	DBLP DOI BibTeX RDF	Bioinformatics tool, visual editor for DNA sequences, nucleotide representation standards, JAVA stand-alone interface, Genomic Epidemiology research support
24	J. W. Guan, David A. Bell, Dayou Liu	Discovering Maximal Frequent Patterns in Sequence Groups.	Rough Sets and Current Trends in Computing	2004	DBLP DOI BibTeX RDF	Sales Data, DNA sequences/profiles, Data Mining, Rough Sets, Bioinformatics, Document Retrieval
24	Byoung-Tak Zhang, Jinsan Yang, Sung Wook Chi	Self-Organizing Latent Lattice Models for Temporal Gene Expression Profiling.	Mach. Learn.	2003	DBLP DOI BibTeX RDF	DNA-microarray data, correlated genes, temporal expression profiling, learning latent-variable models, visualization
24	Michael (Shan-Hui) Ho, Weng-Long Chang, Minyi Guo	Molecular Fast Solution for Set-basis Problem on Sticker-based Model.	ICPP Workshops	2003	DBLP DOI BibTeX RDF	NP-complete Problem, Molecular Computing, Biological Computing, DNA-based Computing
24	Piotr Wasiewicz, Jan J. Mulawka	Molecular genetic programming.	Soft Comput.	2001	DBLP DOI BibTeX RDF	Genetic programming, DNA computing, Evolutionary programming, Data flow computer
24	Adi Shamir	Visual Cryptanalysis.	EUROCRYPT	1998	DBLP DOI BibTeX RDF	visual computation, bit slice computation, parallel computers, Cryptanalysis, quantum computers, DNA computers, photography
23	Erik D. Demaine, Martin L. Demaine, Sándor P. Fekete, Mashhood Ishaque, Eynat Rafalin, Robert T. Schweller, Diane L. Souvaine	Staged self-assembly: nanomanufacture of arbitrary shapes with O (1) glues.	Nat. Comput.	2008	DBLP DOI BibTeX RDF	Tiling, Nanotechnology, DNA computing, Self-assembly, DNA self-assembly
23	Ydo Wexler, Zohar Yakhini, Yechezkel Kashi, Dan Geiger	Finding approximate tandem repeats in genomic sequences.	RECOMB	2004	DBLP DOI BibTeX RDF	DNA repeats, DNA satellites, teiresias, trf, pattern discovery, tandem repeats
21	Sven Rahmann, Tobias Marschall, Frank Behler, Oliver Kramer 0001	Modeling evolutionary fitness for DNA motif discovery.	GECCO	2009	DBLP DOI BibTeX RDF	ea, evolutionary algorithms, local search, evolution strategies, computational biology, dna, motif discovery, transcription factor, es
21	Jie Lv 0001, Yan Zhang 0016, Yunfeng Qi, Hongbo Liu 0004, Jiang Zhu, Jianzhong Su, Ruijie Zhang	ChIP-seq Data Plays an Important Role in a Cytosine-Based DNA Methylation Prediction Model.	FSKD (5)	2009	DBLP DOI BibTeX RDF	tissue-specific, model, DNA, methylation
21	William H. Latham, Miki Shaw, Stephen Todd, Frederic F. Leymarie	Using DNA to generate 3D organic art forms.	GECCO	2007	DBLP DOI BibTeX RDF	visualization, DNA, 3D shape, growth
20	Jirí Kubalík, Petr Buryan, Libor Wagner	Solving the DNA fragment assembly problem efficiently using iterative optimization with evolved hypermutations.	GECCO	2010	DBLP DOI BibTeX RDF	fragment assembly problem, evolutionary algorithms, stochastic local search
20	Deepak Vijaywargi, Dave Lewis 0002, Darko Kirovski	Optical DNA.	Financial Cryptography	2009	DBLP DOI BibTeX RDF