Search results for "Biocomputing"

Hits ?▲	Authors	Title	Venue	Year	Link
41	Kang Peng, Zoran Obradovic, Slobodan Vucetic	Exploring Bias in the Protein Data Bank Using Contrast Classifiers.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Irit Gat-Viks, Ron Shamir, Richard M. Karp, Roded Sharan	Reconstructing Chain Functions in Genetic Networks.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Gert R. G. Lanckriet, Minghua Deng, Nello Cristianini, Michael I. Jordan, William Stafford Noble	Kernel-Based Data Fusion and Its Application to Protein Function Prediction in Yeast.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Jeremy Buhler, Richard Souvenir, Weixiong Zhang, Rob Mitra	Design of a High-Throughput Assay for Alternative Splicing Using Polymerase Colonies.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
41	Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein (eds.)	Proceedings of the 8th Pacific Symposium on Biocomputing, PSB 2003, Lihue, Hawaii, USA, January 3-7, 2003	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Doug Stryke, Conrad C. Huang, Michiko Kawamoto, Susan J. Johns, Elaine J. Carlson, Joseph A. Deyoung, Maya K. Leabman, Ira Herskowitz, Kathleen M. Giacomini, Thomas E. Ferrin	SNP Analysis and Presentation in the Pharmacogenetics of Membrane Transporters Project.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Patrick Lambrix, Anna Edberg	Evaluation of Ontology Merging Tools in Bioinformatics.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Hongzhe Li, Yihui Luan	Kernel Cox Regression Models for Linking Gene Expression Profiles to Censored Survival Data.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Mike P. Liang, Douglas L. Brutlag, Russ B. Altman	Automated Construction of Structural Motifs for Predicting Functional Sites on Protein Structures.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Bruce Rannala, Jeff P. Reeve	Joint Bayesian Estimation of Mutation Location and Age Using Linkage Disequilibrium.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein	Preface.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Daniel P. Berrar, C. Stephen Downes, Werner Dubitzky	Multiclass Cancer Classification Using Gene Expression Profiling and Probabilistic Neural Networks.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Hongfang Liu, Carol Friedman	Mining Terminological Knowledge in Large Biomedical Corpora.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Josep M. Comeron, Martin Kreitman, Francisco M. de la Vega	On the Power to Detect SNP/Phenotype Association in Candidate Quantitative Trait Loci Genomic Regions: A Simulation Study.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Alex Lancaster, Mark P. Nelson, Diogo Meyer, Richard M. Single, Glenys Thomson	PyPop: A Software Framework for Population Genomics: Analyzing Large-Scale Multi-Locus Genotype Data.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Minghua Deng, Fengzhu Sun, Ting Chen 0006	Assessment of the reliability of protein-protein interactions and protein function prediction.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Michiel J. L. de Hoon, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Satoru Miyano	Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data of Bacillus Subtilis Using Differential Equations.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Francisco M. de la Vega, Kenneth K. Kidd, Isaac S. Kohane	Human Genome Variation: Haplotypes, Linkage Disequilibrium, and Populations - Session Introduction.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Patrick Glenisson, Peter Antal, Janick Mathys, Yves Moreau, Bart De Moor	Evaluation of the Vector Space Representation in Text-Based Gene Clustering.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Shiquan Wu, Xun Gu	Algorithms for Multiple Genome Rearrangement by Signed Reversals.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Evgeny Cheremushkin, Alexander E. Kel	Whole Genome Human/Mouse Phylogenetic Footprinting of Potential Transcription Regulatory Signals.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Kristian Kersting, Tapani Raiko, Stefan Kramer 0001, Luc De Raedt	Towards Discovering Structural Signatures of Protein Folds Based on Logical Hidden Markov Models.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Ryan E. Altenbaugh, Kenneth J. Kauffman, Jeremy S. Edwards	Suitability and Utility of Computational Analysis Tools: Characterization of Erythrocyte Parameter Variation.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Louigi Addario-Berry, Michael T. Hallett, Jens Lagergren	Towards Identifying Lateral Gene Transfer Events.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	P. Karina Tulipano, William S. Millar, James J. Cimino	Linking Molecular Imaging Terminology to the Gene Ontology (GO).	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Liping Wei, Inna Dubchak, Victor V. Solovyev	Genome-wide Analysis and Comparative Genomics - Session Introduction.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Robert C. Edgar, Kimmen Sjölander	Simultaneous Sequence Alignment and Tree Construction Using Hidden Markov Models.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	R. Ganesh, Deborah A. Siegele, Thomas R. Ioerger	MOPAC: MOtif Finding by Preprocessing and Agglomerative Clustering from Microarrays.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray	Biomedical Ontologies - Session Introduction.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	V. Anne Smith, Erich D. Jarvis, Alexander J. Hartemink	Influence of Network Topology and Data Collection on Network Inference.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Anna Tsalenko, Amir Ben-Dor, Nancy Cox, Zohar Yakhini	Methods for Analysis and Visualization of SNP Genotype Data for Complex Diseases.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Phillip W. Lord, Robert D. Stevens, Andy Brass, Carole A. Goble	Semantic Similarity Measures as Tools for Exploring the Gene Ontology.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Ariel S. Schwartz, Marti A. Hearst	A Simple Algorithm for Identifying Abbreviation Definitions in Biomedical Text.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Rohit Singh 0001, Mitul Saha	Identifying Structural Motifs in Proteins.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Liviu Badea	Functional Discrimination of Gene Expression Patterns in Terms of the Gene Ontology.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Eran Segal, Alexis J. Battle, Daphne Koller	Decomposing Gene Expression into Cellular Processes.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Jochen Jaeger, Rimli Sengupta, Walter L. Ruzzo	Improved Gene Selection for Classification of Microarrays.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Guang Song, Shawna L. Thomas, Ken A. Dill, J. Martin Scholtz, Nancy M. Amato	A Path Planning-Based Study of Protein Folding with a Case Study of Hairpin Formation in Protein G and L.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Tzu L. Phang, Margaret C. Neville, Michael Rudolph 0004, Lawrence Hunter	Trajectory Clustering: A Non-Parametric Method for Grouping Gene Expression Time Courses with Applications to Mammary Development.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Howard D. Cash, Jonathan W. Hoyle, Amy J. Sutton	Development Under Extreme Conditions: Forensic Bioinformatics in the Wake of the World Trade Center Disaster.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Serafim Batzoglou, Lior Pachter	Gene Regulation - Session Introduction.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Predrag Radivojac, Zoran Obradovic, Celeste J. Brown, A. Keith Dunker	Prediction of Boundaries Between Intrinsically Ordered and Disordered Protein Regions.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Lonnie Chrisman, Pat Langley, Stephen D. Bay	Incorporating Biological Knowledge into Evaluation of Causal Regulatory Hypotheses.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Chris Wroe, Robert Stevens 0001, Carole A. Goble, Michael Ashburner	A Methodology to Migrate the Gene Ontology to a Description Logic Environment Using DAML+OIL.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Sean D. Mooney, Patricia C. Babbitt	Informatics Approaches in Structural Genomics - Session Introduction.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Victor Olman, Dong Xu 0002, Ying Xu 0001	Identification of Regulatory Binding Sites Using Minimum Spanning Trees.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Mikko Koivisto, Markus Perola, T. Varilo, W. Hennah, J. Ekelund, Margus Lukk, L. Peltonen, Esko Ukkonen, Heikki Mannila	An MDL Method for Finding Haplotype Blocks and for Estimating the Strength of Haplotype Block Boundaries.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Meenakshi Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker	A Biological Named Entity Recognizer.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Jinbo Xu, Ming Li 0001, Guo-Hui Lin, Dongsup Kim, Ying Xu 0001	Protein Threading by Linear Programming.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Tamer Kahveci, Ambuj K. Singh	MAP: Searching Large Genome Databases.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Niklas von Öhsen, Ingolf Sommer, Ralf Zimmer	Profile-Profile Alignment: A Powerful Tool for Protein Structure Prediction.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Hiroshi Matsuno, Ryutaro Murakani, Rie Yamane, Naoyuki Yamasaki, Sachie Fujita, Haruka Yoshimori, Satoru Miyano	Boundary Formation by Notch Signaling in Drosophila Multicellular Systems: Experimental Observations and Gene Network Modeling by Genomic Object Net.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Udo Hahn, Stefan Schulz 0001	Towards a Broad-Coverage Biomedical Ontology Based on Description Logics.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Peter D. Karp, Eric P. Neumann, Alexander J. Hartemink, Pedro Romero	Genome, Pathway, and Interaction Bioinformatics - Session Introduction.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein	Special Paper - Introduction.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Derek Gordon, Mark A. Levenstien, Stephen J. Finch, Jürg Ott	Errors and Linkage Disequilibrium Interact Multiplicatively When Computing Sample Sizes for Genetic Case-Control Association Studies.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Indra Neil Sarkar, Michael N. Cantor, R. Gelman, Frank W. Hartel, Yves A. Lussier	Linking Biomedical Language Information and Knowledge Resources in the 21st Century: GO and UMLS.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Tetsushi Yada, Yasushi Totoki, Y. Takaeda, Yasubumi Sakaki, Toshihisa Takagi	DIGIT: A Novel Gene Finding Program by Combining Gene-Finders.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Marco Antoniotti, F. Park, Alberto Policriti, Nadia Ugel, Bud Mishra	Foundations of a Query and Simulation System for the Modeling of Biochemical and Biological Processes.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Eleazar Eskin, Uri Keich, Mikhail S. Gelfand, Pavel A. Pevzner	Genome-Wide Analysis of Bacterial Promoter Regions.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	T. M. Murali 0001, Simon Kasif	Extracting Conserved Gene Expression Motifs from Gene Expression Data.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Sascha Ott, Yoshinori Tamada, Hideo Bannai, Kenta Nakai, Satoru Miyano	Intrasplicing - Analysis of Long Intron Sequences.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Hadar I. Avi-Itzhak, Xiaoping Su, Francisco M. de la Vega	Selection of Minimum Subsets of Single Nucleotide Polymorphisms to Capture Haplotype Block Diversity.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Daniel Hanisch, Juliane Fluck, Heinz-Theodor Mevissen, Ralf Zimmer	Playing Biology's Name Game: Identifying Protein Names in Scientific Text.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Luay Nakhleh, Jerry Sun 0001, Tandy J. Warnow, C. Randal Linder, Bernard M. E. Moret, Anna Tholse	Towards the Development of Computational Tools for Evaluating Phylogenetic Network Reconstruction Methods.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Lynette Hirschman, Carol Friedman, Robin McEntire, Cathy H. Wu	Linking Biomedical Language, Information and Knowledge - Session Introduction.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
41	Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein (eds.)	Proceedings of the 7th Pacific Symposium on Biocomputing, PSB 2002, Lihue, Hawaii, USA, January 3-7, 2002	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Francisco M. de la Vega, Isaac S. Kohane, Julie A. Schneider, J. Claiborne Stephens	Human Genome Variation: Disease, Drug Response, and Clinical Phenotypes - Session Introduction.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein	Preface.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Udo Hahn, Martin Romacker, Stefan Schulz 0001	Creating Knowledge Repositories from Biomedical Reports: The MEDSYNDIKATE Text Mining System.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	W. John Wilbur	A Thematic Analysis of the AIDS Literature.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Alexander J. Hartemink, David K. Gifford, Tommi S. Jaakkola, Richard A. Young	Combining Location and Expression Data for Principled Discovery of Genetic Regulatory Network Models.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Seiya Imoto, Takao Goto, Satoru Miyano	Estimation of Genetic Networks and Functional Structures Between Genes by Using Bayesian Networks and Nonparametric Regression.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Gondy Leroy, Hsinchun Chen	Filling Preposition-Based Templates to Capture Information from Medical Abstracts.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Jing Ding, Daniel Berleant, Dan Nettleton, Eve Syrkin Wurtele	Mining MEDLINE: Abstracts, Sentences, or Phrases?	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Daniel L. Rubin, Micheal Hewett, Diane E. Oliver, Teri E. Klein, Russ B. Altman	Automating Data Acquisition into Ontologies from Pharmacogenetics Relational Data Sources Using Declarative Object Definitions and XML.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Rasmus Nielsen, John P. Huelsenbeck	Detecting Positively Selected Amino Acid Sites Using Posterior Predictive P-Values.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Jean-Philippe Vert	Support Vector Machine Prediction of Signal Peptide Cleavage Site Using a New Class of Kernels for Strings.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Debra Goldberg, Susan McCouch, Jon M. Kleinberg	Constructing Comparative Genome Maps with Unresolved Marker Order.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Asa Ben-Hur, André Elisseeff, Isabelle Guyon	A Stability Based Method for Discovering Structure in Clustered Data.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Bradley A. Malin, Latanya Sweeney	Inferring Genotype from Clinical Phenotype through a Knowledge Based Algorithm.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano	The ERATO Systems Biology Workbench: Enabling Interaction and Exchange Between Software Tools for Computational Biology.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Jeremy Heil, Stephen Glanowski, J. Scott, Emily S. Winn-Deen, Ivy McMullen, L. Wu, C. Gire, A. Sprague	An Automated Computer System to Support Ultra High Throughput SNP Genotyping.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Inna Dubchak, Lior Pachter, Liping Wei	Genome-Wide Analysis and Comparative Genomics - Session Introduction.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Francesca Chiaromonte, V. B. Yap, W. Miller	Scoring Pairwise Genomic Sequence Alignments.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Changwon Yoo, Vesteinn Thorsson, Gregory F. Cooper	Discovery of Causal Relationships in a Gene-Regulation Pathway from a Mixture of Experimental and Observational DNA Microarray Data.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Roderic D. M. Page, J. A. Cotton	Vertebrate Phylogenomics: Reconciled Trees and Gene Duplications.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	R. Brian Potter, Sorin Draghici	A SOFM Approach to Predicting HIV Drug Resistance.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Shawn M. Gomez, Andrey Rzhetsky	Towards the Prediction of Complete Protein-Protein Interaction Networks.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	J. Schonfeld, Oliver Eulenstein, Kent Vander Velden, Gavin J. P. Naylor	Investigating Evolutionary Lines of Least Resistance Using the Inverse Protein-Folding Problem.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Donald J. Patterson, Ken Yasuhara, Walter L. Ruzzo	Pre-mRNA Secondary Structure Prediction Aids Splice Site Prediction.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Paul Pavlidis, Darrin P. Lewis, William Stafford Noble	Exploring Gene Expression Data with Class Scores.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Predrag Radivojac, Zoran Obradovic, Celeste J. Brown, A. Keith Dunker	Improving Sequence Alignments For Intrinsically Disordered Proteins.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Scott Stanley, Benjamin A. Salisbury	Phylogenetic Genomics and Genomic Phylogenetics - Session Introduction.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Zufar Mulyukov, Pavel A. Pevzner	EULER-PCR: Finishing Experiments for Repeat Resolution.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Luay Nakhleh, Bernard M. E. Moret, Usman Roshan, Katherine St. John, Jerry Sun 0001, Tandy J. Warnow	The Accuracy of Fast Phylogenetic Methods for Large Datasets.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Rachid Gherbi, Joan Hérisson	Representation and Processing of Complex DNA Spatial Architecture and its Annotated Genomic Content.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Sing-Hoi Sze, Mikhail S. Gelfand, Pavel A. Pevzner	Finding Weak Motifs in DNA Sequences.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Eric W. Stawiski, Yael Mandel-Gutfreund, A. C. Lowenthal, L. M. Gregoret	Progress in Predicting Protein Function from Structure: Unique Features of O-Glycosidases.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
41	Claus-Wilhelm von der Lieth	Expanding Proteomics to Glycobiology - Session Introduction.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF