Search results for "Homology"

Hits ?▲	Authors	Title	Venue	Year	Link
13	Nick Byrne, James R. Clough, Giovanni Montana, Andrew P. King	A persistent homology-based topological loss function for multi-class CNN segmentation of cardiac MRI.	CoRR	2020	DBLP BibTeX RDF
13	Shengdong Zhang, Shihui You, Longfei Chen, Xiaofei Liu	Topological feature study of slope failure process via persistent homology-based machine learning.	CoRR	2020	DBLP BibTeX RDF
13	Antonio Rieser, Alejandra Trujillo	Kunneth Theorems for Vietoris-Rips Homology.	CoRR	2020	DBLP BibTeX RDF
13	Megan Johnson, Jae-Hun Jung	The Interconnectivity Vector: A Finite-Dimensional Vector Representation of Persistent Homology.	CoRR	2020	DBLP BibTeX RDF
13	Alex Cole, Gregory J. Loges, Gary Shiu	Interpretable Phase Detection and Classification with Persistent Homology.	CoRR	2020	DBLP BibTeX RDF
13	Shizuo Kaji, Takeki Sudo, Kazushi Ahara	Cubical Ripser: Software for computing persistent homology of image and volume data.	CoRR	2020	DBLP BibTeX RDF
13	Aditi S. Krishnapriyan, Joseph Montoya, Jens S. Hummelshøj, Dmitriy Morozov	Persistent homology advances interpretable machine learning for nanoporous materials.	CoRR	2020	DBLP BibTeX RDF
13	Mohd Sabri Ismail, Mohd Salmi Md Noorani, Munira Ismail, Fatimah Abdul Razak, Mohd Almie Alias	Predicting next day direction of stock price movement using machine learning methods with persistent homology: Evidence from Kuala Lumpur Stock Exchange.	Appl. Soft Comput.	2020	DBLP DOI BibTeX RDF
13	Yuri I. Manin, Matilde Marcolli	Nori Diagrams and Persistent Homology.	Math. Comput. Sci.	2020	DBLP DOI BibTeX RDF
13	Hailun Zheng	The rigidity of the graphs of homology spheres minus one edge.	Discret. Math.	2020	DBLP DOI BibTeX RDF
13	Mariama Jaiteh, Ismael Rodriguez-Espigares, Jana Selent, Jens Carlsson	Performance of virtual screening against GPCR homology models: Impact of template selection and treatment of binding site plasticity.	PLoS Comput. Biol.	2020	DBLP DOI BibTeX RDF
13	Yazan Haddad, Vojtech Adam, Zbynek Heger	Ten quick tips for homology modeling of high-resolution protein 3D structures.	PLoS Comput. Biol.	2020	DBLP DOI BibTeX RDF
13	Brian Joseph Bender, Brennica Marlow, Jens Meiler	Improving homology modeling from low-sequence identity templates in Rosetta: A case study in GPCRs.	PLoS Comput. Biol.	2020	DBLP DOI BibTeX RDF
13	Grey W. Wilburn, Sean R. Eddy	Remote homology search with hidden Potts models.	PLoS Comput. Biol.	2020	DBLP DOI BibTeX RDF
13	Jonathan Jaquette, Benjamin Schweinhart	Fractal dimension estimation with persistent homology: A comparative study.	Commun. Nonlinear Sci. Numer. Simul.	2020	DBLP DOI BibTeX RDF
13	Sarah Tymochko, Elizabeth Munch, Firas A. Khasawneh	Using Zigzag Persistent Homology to Detect Hopf Bifurcations in Dynamical Systems.	Algorithms	2020	DBLP DOI BibTeX RDF
13	Daniel Lütgehetmann, Dejan Govc, Jason P. Smith, Ran Levi	Computing Persistent Homology of Directed Flag Complexes.	Algorithms	2020	DBLP DOI BibTeX RDF
13	Chaoyang Yan, Kazuaki Nakane, Xiangxue Wang, Yao Fu, Haoda Lu, Xiangshan Fan, Michael D. Feldman, Anant Madabhushi, Jun Xu 0005	Automated gleason grading on prostate biopsy slides by statistical representations of homology profile.	Comput. Methods Programs Biomed.	2020	DBLP DOI BibTeX RDF
13	Takashi Teramoto, Toshiya Shinohara, Akihiro Takiyama	Computer-aided classification of hepatocellular ballooning in liver biopsies from patients with NASH using persistent homology.	Comput. Methods Programs Biomed.	2020	DBLP DOI BibTeX RDF
13	Mukti Routray, Niranjan Kumar Ray	Remote homology detection using GA and NSGA-II on physicochemical properties.	Int. J. Comput. Appl. Technol.	2020	DBLP DOI BibTeX RDF
13	Antonio Alfieri, Jackson Van Dyke	An introduction to knot Floer homology and curved bordered algebras.	Period. Math. Hung.	2020	DBLP DOI BibTeX RDF
13	Riccardo Fellegara, Federico Iuricich, Leila De Floriani, Ulderico Fugacci	Efficient Homology-Preserving Simplification of High-Dimensional Simplicial Shapes.	Comput. Graph. Forum	2020	DBLP DOI BibTeX RDF
13	Tamal K. Dey, Ryan Slechta	Filtration Simplification for Persistent Homology via Edge Contraction.	J. Math. Imaging Vis.	2020	DBLP DOI BibTeX RDF
13	Soheil Rostami, Walid Saad, Choong Seon Hong	Deep Learning With Persistent Homology for Orbital Angular Momentum (OAM) Decoding.	IEEE Commun. Lett.	2020	DBLP DOI BibTeX RDF
13	Ina Koch, Oliver Philipp, Andrea Hamann, Heinz D. Osiewacz	Reconstruction of Protein-Protein Interaction Networks Using Homology-Based Search: Application to the Autophagy Pathway of Aging in Podospora anserina.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
13	Samir Chowdhury 0001, Steve Huntsman, Matvey Yutin	Path Homology and Temporal Networks.	COMPLEX NETWORKS (2)	2020	DBLP DOI BibTeX RDF
13	Dong Quan Ngoc Nguyen, Lin Xing, Lizhen Lin	Community Detection, Pattern Recognition, and Hypergraph-Based Learning: Approaches Using Metric Geometry and Persistent Homology.	FSDM	2020	DBLP DOI BibTeX RDF
13	Anindya Moitra, Nicholas O. Malott, Philip A. Wilsey	Persistent Homology on Streaming Data.	ICDM (Workshops)	2020	DBLP DOI BibTeX RDF
13	Kenta Ninomiya, Hidetaka Arimura	Homology-based approach for prognostic prediction of lung cancer using novel topologically invariant radiomic features.	Medical Imaging: Image Processing	2020	DBLP DOI BibTeX RDF
13	Mustafa Hajij, Elizabeth Munch, Paul Rosen 0001	Fast and Scalable Complex Network Descriptor Using PageRank and Persistent Homology.	IDSTA	2020	DBLP DOI BibTeX RDF
13	Satoru Watanabe, Hayato Yamana	Deep Neural Network Pruning Using Persistent Homology.	AIKE	2020	DBLP DOI BibTeX RDF
13	Luciano Melodia, Richard Lenz	Persistent Homology as Stopping-Criterion for Voronoi Interpolation.	IWCIA	2020	DBLP DOI BibTeX RDF
13	Michael Zhou, Yongsheng Bai	Bioinf-PHP: Bioinformatics Pipeline for Protein Homology and Phylogeny.	CLOUD	2020	DBLP DOI BibTeX RDF
13	Abhishek Rathod	Fast Algorithms for Minimum Cycle Basis and Minimum Homology Basis.	SoCG	2020	DBLP DOI BibTeX RDF
13	Nello Blaser, Morten Brun	Relative Persistent Homology.	SoCG	2020	DBLP DOI BibTeX RDF
13	Shreya Arya, Jean-Daniel Boissonnat, Kunal Dutta, Martin Lotz	Dimensionality Reduction for k-Distance Applied to Persistent Homology.	SoCG	2020	DBLP DOI BibTeX RDF
13	Andrew Aukerman, Mathieu Carrière, Chao Chen 0012, Kevin Gardner, Raúl Rabadán, Rami Vanguri	Persistent Homology Based Characterization of the Breast Cancer Immune Microenvironment: A Feasibility Study.	SoCG	2020	DBLP DOI BibTeX RDF
13	Tamal K. Dey, Tianqi Li, Yusu Wang 0001	An Efficient Algorithm for 1-Dimensional (Persistent) Path Homology.	SoCG	2020	DBLP DOI BibTeX RDF
13	Mustafa Hajij, Yunhao Zhang, Haowen Liu, Paul Rosen 0001	Persistent Homology and the Discrete Laplace Operator For Mesh Similarity.	CGVC	2020	DBLP DOI BibTeX RDF
13	Austin Lawson, Yu-Min Chung 0002, William Cruse	A Hybrid Metric based on Persistent Homology and its Application to Signal Classification.	ICPR	2020	DBLP DOI BibTeX RDF
13	Jesun Sahariar Firoz, Louis Jenkins, Cliff A. Joslyn, Brenda Praggastis, Emilie Purvine, Mark Raugas	Computing Hypergraph Homology in Chapel.	IPDPS Workshops	2020	DBLP DOI BibTeX RDF
13	Mohammad Haft-Javaherian, Martin Villiger, Chris B. Schaffer, Nozomi Nishimura, Polina Golland, Brett E. Bouma	A topological encoding convolutional neural network for segmentation of 3D multiphoton images of brain vasculature using persistent homology.	CVPR Workshops	2020	DBLP BibTeX RDF
13	Oleg Kachan	Persistent Homology-based Projection Pursuit.	CVPR Workshops	2020	DBLP BibTeX RDF
13	Nicholas O. Malott, Aaron M. Sens, Philip A. Wilsey	Topology Preserving Data Reduction for Computing Persistent Homology.	IEEE BigData	2020	DBLP DOI BibTeX RDF
13	Rebecca Miao, Zhenyi Yang, Valeriy Gavrishchaka	Topological Representation of Rare States Using Combination of Persistent Homology and Complexity Measures.	ICICT	2020	DBLP DOI BibTeX RDF
13	Nick Byrne, James R. Clough, Giovanni Montana, Andrew P. King	A Persistent Homology-Based Topological Loss Function for Multi-class CNN Segmentation of Cardiac MRI.	M&Ms and EMIDEC/STACOM@MICCAI	2020	DBLP DOI BibTeX RDF
13	Weizhi Li, Gautam Dasarathy, Karthikeyan Natesan Ramamurthy, Visar Berisha	Finding the Homology of Decision Boundaries with Active Learning.	NeurIPS	2020	DBLP BibTeX RDF
13	Satoru Watanabe, Hayato Yamana	Topological Measurement of Deep Neural Networks Using Persistent Homology.	ISAIM	2020	DBLP BibTeX RDF
13	Dmitriy Morozov, Arnur Nigmetov	Towards Lockfree Persistent Homology.	SPAA	2020	DBLP DOI BibTeX RDF
13	Aras Asaad	Persistent homology tools for image analysis.		2020	RDF
13	Siddharth Pritam	Collapses and Persistent Homology. (Effondrements et homologie persistante).		2020	RDF
13	Marco Wiltgen	Algorithms for Structure Comparison and Analysis: Homology Modelling of Proteins.	Encyclopedia of Bioinformatics and Computational Biology (1)	2019	DBLP DOI BibTeX RDF
13	Jean-Daniel Boissonnat, Clément Maria	Computing persistent homology with various coefficient fields in a single pass.	J. Appl. Comput. Topol.	2019	DBLP DOI BibTeX RDF
13	Andrea Cerri, Marc Ethier, Patrizio Frosini	On the geometrical properties of the coherent matching distance in 2D persistent homology.	J. Appl. Comput. Topol.	2019	DBLP DOI BibTeX RDF
13	René Corbet, Ulderico Fugacci, Michael Kerber, Claudia Landi 0001, Bei Wang 0001	A kernel for multi-parameter persistent homology.	Comput. Graph. X	2019	DBLP DOI BibTeX RDF
13	Do Ngoc Yen, Tran Tuan Nam	Generalized local homology and duality.	Int. J. Algebra Comput.	2019	DBLP DOI BibTeX RDF
13	Binglin Zhao, Zheng Shan, Fudong Liu, Bo Zhao 0010, Yihang Chen, Wenjie Sun	Malware homology identification based on a gene perspective.	Frontiers Inf. Technol. Electron. Eng.	2019	DBLP DOI BibTeX RDF
13	Yue Zhang, Chunfang Zheng, David Sankoff	A branching process for homology distribution-based inference of polyploidy, speciation and loss.	Algorithms Mol. Biol.	2019	DBLP DOI BibTeX RDF
13	Bin Liu 0014, Yulin Zhu	ProtDec-LTR3.0: Protein Remote Homology Detection by Incorporating Profile-Based Features Into Learning to Rank.	IEEE Access	2019	DBLP DOI BibTeX RDF
13	Antonella Mensi, Manuele Bicego, Pietro Lovato, Marco Loog, David M. J. Tax	A dissimilarity-based multiple instance learning approach for protein remote homology detection.	Pattern Recognit. Lett.	2019	DBLP DOI BibTeX RDF
13	Tamal K. Dey, Mateusz Juda, Tomasz Kapela, Jacek Kubica, Michal Lipinski, Marian Mrozek	Persistent Homology of Morse Decompositions in Combinatorial Dynamics.	SIAM J. Appl. Dyn. Syst.	2019	DBLP DOI BibTeX RDF
13	Emil Horobet, Madeleine Weinstein	Offset hypersurfaces and persistent homology of algebraic varieties.	Comput. Aided Geom. Des.	2019	DBLP DOI BibTeX RDF
13	Bin Liu 0014, Shumin Li	ProtDet-CCH: Protein Remote Homology Detection by Combining Long Short-Term Memory and Ranking Methods.	IEEE ACM Trans. Comput. Biol. Bioinform.	2019	DBLP DOI BibTeX RDF
13	Bin Liu 0014, Junjie Chen 0004, Mingyue Guo, Xiaolong Wang 0001	Protein Remote Homology Detection and Fold Recognition Based on Sequence-Order Frequency Matrix.	IEEE ACM Trans. Comput. Biol. Bioinform.	2019	DBLP DOI BibTeX RDF
13	Ahmet A. Husainov	Homology Groups of Cubical Sets.	Appl. Categorical Struct.	2019	DBLP DOI BibTeX RDF
13	Talha Qaiser, Yee-Wah Tsang, Daiki Taniyama, Naoya Sakamoto, Kazuaki Nakane, David B. A. Epstein, Nasir M. Rajpoot	Fast and accurate tumor segmentation of histology images using persistent homology and deep convolutional features.	Medical Image Anal.	2019	DBLP DOI BibTeX RDF
13	Martin Steinegger, Markus Meier, Milot Mirdita, Harald Vöhringer, Stephan J. Haunsberger, Johannes Söding	HH-suite3 for fast remote homology detection and deep protein annotation.	BMC Bioinform.	2019	DBLP DOI BibTeX RDF
13	Ralph R. Gomez	Sasaki-Einstein 7-Manifolds, Orlik Polynomials and Homology.	Symmetry	2019	DBLP DOI BibTeX RDF
13	Said Tighadouini, Smaail Radi, Farid Abrigach, Redouane Benabbes, Driss Eddike, Monique Tillard	Novel β-keto-enol Pyrazolic Compounds as Potent Antifungal Agents. Design, Synthesis, Crystal Structure, DFT, Homology Modeling, and Docking Studies.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
13	Stefano Costanzi, Austin Cohen, Abigail Danfora, Marjan Dolatmoradi	Influence of the Structural Accuracy of Homology Models on Their Applicability to Docking-Based Virtual Screening: The β2 Adrenergic Receptor as a Case Study.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
13	Yasaman Karami, Julien Rey, Guillaume Postic, Samuel Murail, Pierre Tufféry, Sjoerd Jacob de Vries	DaReUS-Loop: a web server to model multiple loops in homology models.	Nucleic Acids Res.	2019	DBLP DOI BibTeX RDF
13	Wei Zheng, Chengxin Zhang, Qiqige Wuyun, Robin Pearce, Yang Li 0107, Yang Zhang 0040	LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins.	Nucleic Acids Res.	2019	DBLP DOI BibTeX RDF
13	Peter Bürgisser, Felipe Cucker, Pierre Lairez	Computing the Homology of Basic Semialgebraic Sets in Weak Exponential Time.	J. ACM	2019	DBLP DOI BibTeX RDF
13	Anthea Monod, Sara Kalisnik, Juan Ángel Patino-Galindo, Lorin Crawford	Tropical Sufficient Statistics for Persistent Homology.	SIAM J. Appl. Algebra Geom.	2019	DBLP DOI BibTeX RDF
13	Heather A. Harrington, Nina Otter, Hal Schenck, Ulrike Tillmann	Stratifying Multiparameter Persistent Homology.	SIAM J. Appl. Algebra Geom.	2019	DBLP DOI BibTeX RDF
13	David Simoncini, Kam Y. J. Zhang, Thomas Schiex, Sophie Barbe	A structural homology approach for computational protein design with flexible backbone.	Bioinform.	2019	DBLP DOI BibTeX RDF
13	Jiahua He, Huanyu Tao, Sheng-You Huang	Protein-ensemble-RNA docking by efficient consideration of protein flexibility through homology models.	Bioinform.	2019	DBLP DOI BibTeX RDF
13	Soheil Rostami, Walid Saad, Choong Seon Hong	Deep Learning with Persistent Homology for Orbital Angular Momentum (OAM) Decoding.	CoRR	2019	DBLP BibTeX RDF
13	Peter Bubenik, Michael Hull, Dhruv Patel, Benjamin Whittle	Persistent homology detects curvature.	CoRR	2019	DBLP BibTeX RDF
13	Mehmet Emin Aktas, Esra Akbas, Ahmed El Fatmaoui	Persistence Homology of Networks: Methods and Applications.	CoRR	2019	DBLP BibTeX RDF
13	Sarah Tymochko, Elizabeth Munch, Jason Dunion, Kristen Corbosiero, Ryan Torn	Using Persistent Homology to Quantify a Diurnal Cycle in Hurricane Felix.	CoRR	2019	DBLP BibTeX RDF
13	Facundo Mémoli, Kritika Singhal	A Primer on Persistent Homology of Finite Metric Spaces.	CoRR	2019	DBLP BibTeX RDF
13	Riccardo Mengoni, Alessandra Di Pierro, Laleh Memarzadeh, Stefano Mancini	Persistent homology analysis of multiqubit entanglement.	CoRR	2019	DBLP BibTeX RDF
13	Indrava Roy, Sudharsan Vijayaraghavan, Sarath Jyotsna Ramaia, Areejit Samal	Forman-Ricci curvature and Persistent homology of unweighted complex networks.	CoRR	2019	DBLP BibTeX RDF
13	Jérémy Charlier, François Petit, Gaston Ormazabal, Radu State, Jean Hilger	PHom-WAE: Persitent Homology for Wasserstein Auto-Encoders.	CoRR	2019	DBLP BibTeX RDF
13	Michelle Feng, Mason A. Porter	Persistent Homology of Geospatial Data: A Case Study with Voting.	CoRR	2019	DBLP BibTeX RDF
13	Ali Madani, Cyna Shirazinejad, Jia Rui Ong, Hengameh Shams, Mohammad R. K. Mofrad	ProDyn0: Inferring calponin homology domain stretching behavior using graph neural networks.	CoRR	2019	DBLP BibTeX RDF
13	Harish Kannan, Emil Saucan, Indrava Roy, Areejit Samal	Persistent homology of unweighted complex networks via discrete Morse theory.	CoRR	2019	DBLP BibTeX RDF
13	Ryan Yandle, Rishi Mukhopadhyay, Homayoun Valafar	Using Residual Dipolar Couplings from Two Alignment Media to Detect Structural Homology.	CoRR	2019	DBLP BibTeX RDF
13	Umar Islambekov, Yulia R. Gel	Unsupervised Space-Time Clustering using Persistent Homology.	CoRR	2019	DBLP BibTeX RDF
13	Christoph D. Hofer, Roland Kwitt, Mandar Dixit, Marc Niethammer	Connectivity-Optimized Representation Learning via Persistent Homology.	CoRR	2019	DBLP BibTeX RDF
13	Gunnar E. Carlsson, Anjan Dwaraknath, Bradley J. Nelson	Persistent and Zigzag Homology: A Matrix Factorization Viewpoint.	CoRR	2019	DBLP BibTeX RDF
13	Hitesh Gakhar, Jose A. Perea	Künneth Formulae in Persistent Homology.	CoRR	2019	DBLP BibTeX RDF
13	Ina Seidel, Stefan Weltge	Minimum-cost integer circulations in given homology classes.	CoRR	2019	DBLP BibTeX RDF
13	Milad Kiaee, Adam B. Kashlak, Jisu Kim, Giseon Heo	Diagnosis of Pediatric Obstructive Sleep Apnea via Face Classification with Persistent Homology and Convolutional Neural Networks.	CoRR	2019	DBLP BibTeX RDF
13	Yu-Min Chung 0002, Chuan-Shen Hu, Yu-Lun Lo, Hau-Tieng Wu	A persistent homology approach to heart rate variability analysis with an application to sleep-wake classification.	CoRR	2019	DBLP BibTeX RDF
13	Jérémy Charlier	From Persistent Homology to Reinforcement Learning with Applications for Retail Banking.	CoRR	2019	DBLP BibTeX RDF
13	Kaixuan Zhang, Qinglong Wang, Xue Liu 0001, C. Lee Giles	Shapley Homology: Topological Analysis of Sample Influence for Neural Networks.	CoRR	2019	DBLP BibTeX RDF
13	Bastian Rieck, Markus Banagl, Filip Sadlo, Heike Leitte	Persistent Intersection Homology for the Analysis of Discrete Data.	CoRR	2019	DBLP BibTeX RDF
13	Gunnar Carlsson, Benjamin Filippenko	Persistent homology of the sum metric.	CoRR	2019	DBLP BibTeX RDF