Search results for "Phylogeny"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
16	David Bryant	A lower bound for the breakpoint phylogeny problem.	J. Discrete Algorithms	2004	DBLP DOI BibTeX RDF
16	David Fernández-Baca, Timo Seppäläinen, Giora Slutzki	Parametric multiple sequence alignment and phylogeny construction.	J. Discrete Algorithms	2004	DBLP DOI BibTeX RDF
16	Eran Halperin, Eleazar Eskin	Haplotype reconstruction from genotype data using Imperfect Phylogeny.	Bioinform.	2004	DBLP DOI BibTeX RDF
16	Jon D. McAuliffe, Lior Pachter, Michael I. Jordan	Multiple-sequence functional annotation and the generalized hidden Markov phylogeny.	Bioinform.	2004	DBLP DOI BibTeX RDF
16	Blake Ives, Michael S. Parks, Jaana Porra, Leiser Silva	Phylogeny and Power in the IS Domain: A Response to Benbasat and Zmud's Call for Returning to the IT Artifact.	J. Assoc. Inf. Syst.	2004	DBLP DOI BibTeX RDF
16	Kampei Miyakawa, Hiroshi Narushima	Lattice-theoretic properties of MPR-posets in phylogeny.	Discret. Appl. Math.	2004	DBLP DOI BibTeX RDF
16	Vineet Bafna, Dan Gusfield, Sridhar Hannenhalli, Shibu Yooseph	A Note on Efficient Computation of Haplotypes via Perfect Phylogeny.	J. Comput. Biol.	2004	DBLP DOI BibTeX RDF
16	Itsik Pe'er, Tal Pupko, Ron Shamir, Roded Sharan	Incomplete Directed Perfect Phylogeny.	SIAM J. Comput.	2004	DBLP DOI BibTeX RDF
16	Hernán Dopazo, Javier Santoyo, Joaquín Dopazo	Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model species.	ISMB/ECCB (Supplement of Bioinformatics)	2004	DBLP DOI BibTeX RDF
16	M. D. Woodhams, Michael D. Hendy	Reconstructing phylogeny by Quadratically Approximated Maximum Likelihood.	ISMB/ECCB (Supplement of Bioinformatics)	2004	DBLP DOI BibTeX RDF
16	Dennis E. Shasha, Jason Tsong-Li Wang, Sen Zhang	Unordered Tree Mining with Applications to Phylogeny.	ICDE	2004	DBLP DOI BibTeX RDF
16	Soren Prag, Josephine C. Adams	Molecular phylogeny of the kelch-repeat superfamily reveals an expansion of BTB/kelch proteins in animals.	BMC Bioinform.	2003	DBLP DOI BibTeX RDF
16	Michael Stolz	New Philology and New Phylogeny: Aspects of a Critical Electronic Edition of Wolfram's Parzival.	Lit. Linguistic Comput.	2003	DBLP DOI BibTeX RDF
16	Ren Hua Chung, Dan Gusfield	Perfect phylogeny haplotyper: haplotype inferral using a tree model.	Bioinform.	2003	DBLP DOI BibTeX RDF
16	Gary W. Stuart, Michael W. Berry	A Comprehensive Whole Genome Bacterial Phylogeny Using Correlated Peptide Motifs Defined in a High Dimensional Vector Space.	J. Bioinform. Comput. Biol.	2003	DBLP DOI BibTeX RDF
16	Vineet Bafna, Dan Gusfield, Giuseppe Lancia, Shibu Yooseph	Haplotyping as Perfect Phylogeny: A Direct Approach.	J. Comput. Biol.	2003	DBLP DOI BibTeX RDF
16	David Fernández-Baca, Jens Lagergren	A Polynomial-Time Algorithm for Near-Perfect Phylogeny.	SIAM J. Comput.	2003	DBLP DOI BibTeX RDF
16	Dan Gusfield	An Overview of Haplotyping via Perfect Phylogeny: Theory, Algorithms and Programs.	ICTAI	2003	DBLP DOI BibTeX RDF
16	Tobias Müller 0001, Sven Rahmann, Thomas Dandekar, Matthias Wolf 0002	Robust estimation of the phylogeny of Chlorophyceae(Chlorophyta)based on profile distances.	German Conference on Bioinformatics	2003	DBLP BibTeX RDF
16	Celso C. Ribeiro, Dalessandro Soares Vianna	A genetic algorithm for the phylogeny problem using an optimized crossover strategy based on path-relinking.	WOB	2003	DBLP BibTeX RDF
16	Xun Gu, Kent Vander Velden	DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family.	Bioinform.	2002	DBLP DOI BibTeX RDF
16	Wing-Kai Hon, Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu	Improved Phylogeny Comparisons: Non-Shared Edges Nearest Neighbor Interchanges, and Subtree Transfers	CoRR	2002	DBLP BibTeX RDF
16	Alexandre A. Andreatta, Celso C. Ribeiro	Heuristics for the Phylogeny Problem.	J. Heuristics	2002	DBLP DOI BibTeX RDF
16	Richard Desper, Olivier Gascuel	Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle.	J. Comput. Biol.	2002	DBLP DOI BibTeX RDF
16	Richard Desper, Olivier Gascuel	Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle.	WABI	2002	DBLP DOI BibTeX RDF
16	Li-San Wang	Genome Rearrangement Phylogeny Using Weighbor.	WABI	2002	DBLP DOI BibTeX RDF
16	Chin Lung Lu, Chuan Yi Tang, Richard Chia-Tung Lee	The Full Steiner Tree Problem in Phylogeny.	COCOON	2002	DBLP DOI BibTeX RDF
16	Graziela S. Araújo, Nalvo F. de Almeida Jr.	Phylogeny from Whole Genome Comparison.	WOB	2002	DBLP BibTeX RDF
16	S. Balaji, S. Sujatha, S. Sai Chetan Kumar, Narayanaswamy Srinivasan	PALI - a database of Phylogeny and ALIgnment of homologous protein structures.	Nucleic Acids Res.	2001	DBLP DOI BibTeX RDF
16	Ming Li 0001, Jonathan H. Badger, Xin Chen, Sam Kwong, Paul E. Kearney, Haoyong Zhang	An information-based sequence distance and its application to whole mitochondrial genome phylogeny.	Bioinform.	2001	DBLP DOI BibTeX RDF
16	Georg Fuellen, Johann-Wolfgang Wägele, Robert Giegerich	Minimum conflict: a divide-and-conquer approach to phylogeny estimation.	Bioinform.	2001	DBLP DOI BibTeX RDF
16	S. Sujatha, S. Balaji, Narayanaswamy Srinivasan	PALI: a database of alignments and phylogeny of homologous protein structures.	Bioinform.	2001	DBLP DOI BibTeX RDF
16	Michael A. Charleston	Hitch-Hiking: A Parallel Heuristic Search Strategy, Applied to the Phylogeny Problem.	J. Comput. Biol.	2001	DBLP DOI BibTeX RDF
16	Junhyong Kim, Benjamin A. Salisbury	A Tree Obscured By Vines: Horizontal Gene Transfer and the Median Tree Method of Estimating Species Phylogeny.	Pacific Symposium on Biocomputing	2001	DBLP BibTeX RDF
16	Steve Oberlin	"Architecture Recapitulates Phylogeny": How Scalability Requires Specializatio.	CLUSTER	2001	DBLP DOI BibTeX RDF
16	Henrik Jönsson	Variational Methods in Combinatorial Optimization and Phylogeny Reconstruction.		2001	RDF
16	Hans L. Bodlaender, Michael R. Fellows, Michael T. Hallett, Todd Wareham, Tandy J. Warnow	The hardness of perfect phylogeny, feasible register assignment and other problems on thin colored graphs.	Theor. Comput. Sci.	2000	DBLP DOI BibTeX RDF
16	Fred S. Roberts, Li Sheng 0001	Phylogeny numbers for graphs with two triangles.	Discret. Appl. Math.	2000	DBLP DOI BibTeX RDF
16	Wing-Kai Hon, Ming-Yang Kao, Tak Wah Lam	Improved Phylogeny Comparisons: Non-shared Edges, Nearest Neighbor Interchanges, and Subtree Transfers.	ISAAC	2000	DBLP DOI BibTeX RDF
16	Mary E. Cosner, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Li-San Wang, Tandy J. Warnow, Stacia K. Wyman	A New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental Phylogenetic Analyses of Real and Synthetic Data.	ISMB	2000	DBLP BibTeX RDF
16	David Fernández-Baca, Timo Seppäläinen, Giora Slutzki	Parametric Multiple Sequence Alignment and Phylogeny Construction.	CPM	2000	DBLP DOI BibTeX RDF
16	Peer Bork	Comparing genes and genomes (abstract): from polymorphism to phylogeny.	RECOMB	1999	DBLP DOI BibTeX RDF
16	Marc Rehmsmeier, Martin Vingron	Phylogeny meets sequence search.	German Conference on Bioinformatics	1999	DBLP BibTeX RDF
16	Fred S. Roberts, Li Sheng 0001	Phylogeny Numbers.	Discret. Appl. Math.	1998	DBLP DOI BibTeX RDF
16	David Fernández-Baca, Jens Lagergren	On the Approximability of the Steiner Tree Problem in Phylogeny.	Discret. Appl. Math.	1998	DBLP DOI BibTeX RDF
16	David Sankoff, Mathieu Blanchette	Multiple Genome Rearrangement and Breakpoint Phylogeny.	J. Comput. Biol.	1998	DBLP DOI BibTeX RDF
16	Martin Vingron	Alignment and Phylogeny Construction for Biological Sequences.	IFIP Congress: Fundamentals - Foundations of Computer Science	1998	DBLP BibTeX RDF
16	Martin Vingron	Sequence alignment and phylogeny construction.	Mathematical Support for Molecular Biology	1998	DBLP DOI BibTeX RDF
16	Hiroshi Narushima, Masazumi Hanazawa	A More Efficient Algorithm for MPR Problems in Phylogeny.	Discret. Appl. Math.	1997	DBLP DOI BibTeX RDF
16	W. Schmidt	Phylogeny reconstruction from hydrophobicity profiles of Proteins: An Information-theoretic approach.	German Conference on Bioinformatics	1997	DBLP BibTeX RDF
16	Kevin Atteson	The Performance of Neighbor-Joining Algorithms of Phylogeny Recronstruction.	COCOON	1997	DBLP DOI BibTeX RDF
16	Paul E. Kearney	The relationship between a phylogeny and its ordinal assertions.		1997	RDF
16	Lusheng Wang, Tao Jiang 0001, Eugene L. Lawler	Approximation Algorithms for Tree Alignment with a Given Phylogeny.	Algorithmica	1996	DBLP DOI BibTeX RDF
16	Nicolas Galtier, Manolo Gouy, Christian Gautier	SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny.	Comput. Appl. Biosci.	1996	DBLP DOI BibTeX RDF
16	Richa Agarwala, David Fernández-Baca	Simple Algorithms for Perfect Phylogeny and Triangulating Colored Graphs.	Int. J. Found. Comput. Sci.	1996	DBLP DOI BibTeX RDF
16	Eduardo Sanchez, Daniel Mange, Moshe Sipper, Marco Tomassini, Andrés Pérez-Uribe, André Stauffer	Phylogeny, Ontogeny, and Epigenesis: Three Sources of Biological Inspiration for Softening Hardware.	ICES	1996	DBLP DOI BibTeX RDF
16	Fred S. Roberts, Li Sheng 0001	Phylogeny graphs of arbitrary digraphs.	Mathematical Hierarchies and Biology	1996	DBLP DOI BibTeX RDF
16	Kevin Atteson	The performance of the neighbor-joining method of phylogeny reconstruction.	Mathematical Hierarchies and Biology	1996	DBLP DOI BibTeX RDF
16	Carlo Nesti, Giorgio Poli, Milvia Chicca, Piera Ambrosino, Chiara Scapoli, Italo Barrai	Phylogeny inferred from codon usage pattern in 31 organisms.	Comput. Appl. Biosci.	1995	DBLP DOI BibTeX RDF
16	Michael A. Charleston	Toward a Characterization of Landscapes of Combinatorial Optimization Problems, with Special Attention to the Phylogeny Problem.	J. Comput. Biol.	1995	DBLP DOI BibTeX RDF
16	Jeff A. Jones, Katherine A. Yelick	Parallelizing the Phylogeny Problem.	SC	1995	DBLP DOI BibTeX RDF
16	Richa Agarwala, David Fernández-Baca	A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed.	SIAM J. Comput.	1994	DBLP DOI BibTeX RDF
16	John L. Pollock	The Phylogeny of Rationality.	Cogn. Sci.	1993	DBLP DOI BibTeX RDF
16	David Sankoff, R. J. Cedergren, W. McKay	A strategy for sequence phylogeny research.	Nucleic Acids Res.	1982	DBLP DOI BibTeX RDF
12	Ulrich Krohs	Functions as based on a concept of general design.	Synth.	2009	DBLP DOI BibTeX RDF	Malfunction, Biological design, Technical design, Cummins, Millikan, Type fixation, Function
12	Roberto Blanco, Elvira Mayordomo	ZARAMIT: A System for the Evolutionary Study of Human Mitochondrial DNA.	IWANN (2)	2009	DBLP DOI BibTeX RDF
12	María Jesús García-Pereira, Humberto Quesada, Armando Caballero	A First Insight into the In Silico Evaluation of the Accuracy of AFLP Markers for Phylogenetic Reconstruction.	IWANN (2)	2009	DBLP DOI BibTeX RDF	AFLP, homoplasy, simulation, accuracy, phylogenetic analysis
12	Zaky Adam, David Sankoff	A Statistically Fair Comparison of Ancestral Genome Reconstructions, Based on Breakpoint and Rearrangement Distances.	RECOMB-CG	2009	DBLP DOI BibTeX RDF
12	Bonnie Kirkpatrick, Javier Rosa, Eran Halperin, Richard M. Karp	Haplotype Inference in Complex Pedigrees.	RECOMB	2009	DBLP DOI BibTeX RDF
12	Thomas Eiter, Esra Erdem 0001, Halit Erdogan, Michael Fink 0001	Finding Similar or Diverse Solutions in Answer Set Programming.	ICLP	2009	DBLP DOI BibTeX RDF	similar/diverse solutions, answer set programming, phylogenies
12	Deniz Yörükoglu, Yasin Bakis, Osman Ugur Sezerman	An entropy based heuristic model for predicting functional sub-type divisions of protein families.	GECCO (Companion)	2009	DBLP DOI BibTeX RDF	classification, multiple sequence alignment, protein function
12	Minh Duc Cao, Lloyd Allison, Trevor I. Dix	A Distance Measure for Genome Phylogenetic Analysis.	Australasian Conference on Artificial Intelligence	2009	DBLP DOI BibTeX RDF
12	Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson	Seeded Tree Alignment.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	Graph Theory, Trees, Graph algorithms, Biology and genetics, Computer Applications, Discrete Mathematics, Life and Medical Sciences, Mathematics of Computing
12	Michael D. Hendy, Sagi Snir	Hadamard Conjugation for the Kimura 3ST Model: Combinatorial Proof Using Path Sets.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	Hadamard conjugation, K3ST model, path-sets, phylogenetic invariants, phylogenetic trees
12	Sabrina Mantaci, Antonio Restivo, Giovanna Rosone, Marinella Sciortino	A New Combinatorial Approach to Sequence Comparison.	Theory Comput. Syst.	2008	DBLP DOI BibTeX RDF	Sequence comparison, Burrows-Wheeler transform
12	Yufeng Wu, Dan Gusfield	A new recombination lower bound and the minimum perfect phylogenetic forest problem.	J. Comb. Optim.	2008	DBLP DOI BibTeX RDF	Lower bound on the minimum number of recombination, Ancestral recombination graph, Computational complexity, Recombination, Population genetics
12	Sabine Gillner, Hanspeter A. Mallot	These Maps Are Made for Walking - Task Hierarchy of Spatial Cognition.	Robotics and Cognitive Approaches to Spatial Mapping	2008	DBLP DOI BibTeX RDF
12	Qian Zhu 0002, Zaky Adam, Vicky Choi, David Sankoff	Generalized Gene Adjacencies, Graph Bandwidth and Clusters in Yeast Evolution.	ISBRA	2008	DBLP DOI BibTeX RDF
12	Xintao Wei, Lenore Cowen, Carla E. Brodley, Arthur Brady, D. Sculley, Donna K. Slonim	A Distance-Based Method for Detecting Horizontal Gene Transfer in Whole Genomes.	ISBRA	2008	DBLP DOI BibTeX RDF
12	Tomasz Arodz	Clustering Organisms Using Metabolic Networks.	ICCS (2)	2008	DBLP DOI BibTeX RDF	Graph descriptors, Phylogenetic tree, Metabolic networks
12	Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao	Haplotype Inferring Via Galled-Tree Networks Is NP-Complete.	COCOON	2008	DBLP DOI BibTeX RDF
12	Sebastian Böcker, Quang Bao Anh Bui, Anke Truß	An Improved Fixed-Parameter Algorithm for Minimum-Flip Consensus Trees.	IWPEC	2008	DBLP DOI BibTeX RDF
12	Elchanan Mossel	Distorted Metrics on Trees and Phylogenetic Forests.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF	CFN, Jukes-Cantor, metric, tree, distortion, Phylogenetics, forest
12	Guillaume Blin, Guillaume Fertin, Irena Rusu, Christine Sinoquet	Extending the Hardness of RNA Secondary Structure Comparison.	ESCAPE	2007	DBLP DOI BibTeX RDF	arc-annotated sequences, NP-hardness, computational biology, edit distance, RNA structures
12	Michail Vlachos, Bahar Taneri, Eamonn J. Keogh, Philip S. Yu	Visual Exploration of Genomic Data.	PKDD	2007	DBLP DOI BibTeX RDF
12	William Arndt, Jijun Tang	Improving Inversion Median Computation Using Commuting Reversals and Cycle Information.	RECOMB-CG	2007	DBLP DOI BibTeX RDF
12	Jie Zheng 0002, Igor B. Rogozin, Eugene V. Koonin, Teresa M. Przytycka	A Rigorous Analysis of the Pattern of Intron Conservation Supports the Coelomata Clade of Animals.	RECOMB-CG	2007	DBLP DOI BibTeX RDF
12	Hao Zhao, Guillaume Bourque	Recovering True Rearrangement Events on Phylogenetic Trees.	RECOMB-CG	2007	DBLP DOI BibTeX RDF
12	Iman Tavassoly, Omid Tavassoly, Mohammad Soltany Rezaee Rad, Negar Mottaghi Dastjerdi	Multifractal Analysis of Chaos Game Representation Images of Mitochondrial DNA.	FBIT	2007	DBLP DOI BibTeX RDF
12	Filip Blagojevic, Alexandros Stamatakis, Christos D. Antonopoulos, Dimitrios S. Nikolopoulos	RAxML-Cell: Parallel Phylogenetic Tree Inference on the Cell Broadband Engine.	IPDPS	2007	DBLP DOI BibTeX RDF
12	Carlos A. Brizuela, Elizabeth Luhrs-Olmos	A team of genetic algorithms for the multiple sequence alignment problem: preliminary results.	SMC	2007	DBLP DOI BibTeX RDF
12	Manuel Cebrián, Manuel Alfonseca 0001, Alfonso Ortega 0002	Automatic generation of benchmarks for plagiarism detection tools using grammatical evolution.	GECCO	2007	DBLP DOI BibTeX RDF	source code plagiarism detection tool assessment, grammatical evolution
12	Srinath Sridhar 0001, Fumei Lam, Guy E. Blelloch, R. Ravi 0001, Russell Schwartz	Efficiently Finding the Most Parsimonious Phylogenetic Tree Via Linear Programming.	ISBRA	2007	DBLP DOI BibTeX RDF
12	Nabil Abdennadher, Régis Boesch	Deploying PHYLIP phylogenetic package on a Large Scale Distributed System.	CCGRID	2007	DBLP DOI BibTeX RDF
12	Mohammad Samie, Gabriel Dragffy, Janice Kiely	Novel Embryonic Array with Neural Network Characteristics.	AHS	2007	DBLP DOI BibTeX RDF
12	Waldo Cancino Ticona, Alexandre C. B. Delbem	A Multi-objective Evolutionary Approach for Phylogenetic Inference.	EMO	2007	DBLP DOI BibTeX RDF	Genetic Algorithms, Multi-Objective Optimization, Phylogenetic Inference
12	Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson	Seeded Tree Alignment and Planar Tanglegram Layout.	WABI	2007	DBLP DOI BibTeX RDF
12	Yufeng Wu, Dan Gusfield	A New Recombination Lower Bound and the Minimum Perfect Phylogenetic Forest Problem.	COCOON	2007	DBLP DOI BibTeX RDF
12	Hans L. Bodlaender, Michael R. Fellows, Michael A. Langston, Mark A. Ragan, Frances A. Rosamond, Mark Weyer	Quadratic Kernelization for Convex Recoloring of Trees.	COCOON	2007	DBLP DOI BibTeX RDF	Topics Algorithms, Complexity
12	Adam C. Siepel, Katherine S. Pollard, David Haussler	New Methods for Detecting Lineage-Specific Selection.	RECOMB	2006	DBLP DOI BibTeX RDF