Search results for "RNA"

Hits ?▲	Authors	Title	Venue	Year	Link
10	Yinglun Wang, Qiurui Chen, Hongwei Shao, Rongxin Zhang, Han Shen	Generating bulk RNA-Seq gene expression data based on generative deep learning models and utilizing it for data augmentation.	Comput. Biol. Medicine	2024	DBLP DOI BibTeX RDF
10	Jie Jiang, Bowen Song, Jia Meng, Jingxian Zhou	Tissue-specific RNA methylation prediction from gene expression data using sparse regression models.	Comput. Biol. Medicine	2024	DBLP DOI BibTeX RDF
10	Haibin Liu, Dianguo Li, Hao Wu 0062	lncLocator-imb: An Imbalance-Tolerant Ensemble Deep Learning Framework for Predicting Long Non-Coding RNA Subcellular Localization.	IEEE J. Biomed. Health Informatics	2024	DBLP DOI BibTeX RDF
10	Guodong Li, Bowei Zhao, Xiaorui Su, Yue Yang, Pengwei Hu, Xi Zhou, Lun Hu	Discovering Consensus Regions for Interpretable Identification of RNA N6-Methyladenosine Modification Sites via Graph Contrastive Clustering.	IEEE J. Biomed. Health Informatics	2024	DBLP DOI BibTeX RDF
10	Hong Seo Lim, Peng Qiu	Quantifying the clusterness and trajectoriness of single-cell RNA-seq data.	PLoS Comput. Biol.	2024	DBLP DOI BibTeX RDF
10	Hua-Chang Chen, Jing Wang, Yu Shyr, Qi Liu 0024	FindAdapt: A python package for fast and accurate adapter detection in small RNA sequencing.	PLoS Comput. Biol.	2024	DBLP DOI BibTeX RDF
10	Zhenxing Guo, Daoyu Duan, Wen Tang, Julia Zhu, William S. Bush, Liangliang Zhang, Xiaofeng Zhu, Fulai Jin, Hao Feng 0005	magpie: A power evaluation method for differential RNA methylation analysis in N6-methyladenosine sequencing.	PLoS Comput. Biol.	2024	DBLP DOI BibTeX RDF
10	Jiarui Feng, S. Peter Goedegebuure, Amanda Zeng, Ye Bi, Ting Wang, Philip R. O. Payne, Li Ding, David DeNardo, William Hawkins, Ryan C. Fields, Fuhai Li	sc2MeNetDrug: A computational tool to uncover inter-cell signaling targets and identify relevant drugs based on single cell RNA-seq data.	PLoS Comput. Biol.	2024	DBLP DOI BibTeX RDF
10	Yameng Zhao, Yin Guo, Limin Li	cKBET: assessing goodness of batch effect correction for single-cell RNA-seq.	Frontiers Comput. Sci.	2024	DBLP DOI BibTeX RDF
10	Xinyu Gu, Yuanyuan Qi, Mohammed El-Kebir	DERNA Enables Pareto Optimal RNA Design.	J. Comput. Biol.	2024	DBLP DOI BibTeX RDF
10	Emanuele Cavalleri, Marco Mesiti	On the Extraction of Meaningful RNA Interactions from Scientific Publications through LLMs and SPIRES.	EDBT/ICDT Workshops	2024	DBLP BibTeX RDF
10	Adam J. Svahn, Mikhail Prokopenko	An Ansatz for Computational Undecidability in RNA Automata.	Artif. Life	2023	DBLP DOI BibTeX RDF
10	K. Padmaja, Debarka Mukhopadhyay	A Model for Detecting Type 2 Diabetes Using Mixed Single-Cell RNA Sequencing with Optimized Data.	SN Comput. Sci.	2023	DBLP DOI BibTeX RDF
10	Chengqi Yi, Jian-Hua Yang	RNA Modifications and Epitranscriptomics.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Sijia Wu, Zhiwei Fan, Pora Kim, Liyu Huang, Xiaobo Zhou 0005	The Integrative Studies on the Functional A-to-I RNA Editing Events in Human Cancers.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Jianjian Wang, Shuang Li, Tianfeng Wang, Si Xu, Xu Wang, Xiaotong Kong, Xiaoyu Lu, Huixue Zhang, Lifang Li, Meng Feng, Shangwei Ning, Lihua Wang 0002	RNA2Immune: A Database of Experimentally Supported Data Linking Non-coding RNA Regulation to The Immune System.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Chen Zhu, Shuting Zhang, Chengzhe Zhou, Caiyun Tian, Biying Shi, Kai Xu, Linjie Huang, Yun Sun, Yuling Lin, Zhongxiong Lai, Yuqiong Guo	RNA Methylome Reveals the m6A-mediated Regulation of Flavor Metabolites in Tea Leaves under Solar-withering.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Xiao Han, Jia Guo, Mengke Wang, Nan Zhang, Jie Ren, Ying Yang, Xu Chi, Yusheng Chen, Huan Yao, Yongliang Zhao, Yun-Gui Yang, Yingpu Sun, Jiawei Xu	Dynamic DNA 5-hydroxylmethylcytosine and RNA 5-methycytosine Reprogramming During Early Human Development.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Shuai Chen, Jinyang Zhang, Fangqing Zhao	Screening Linear and Circular RNA Transcripts from Stress Granules.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Guangsheng Pei, Fangfang Yan, Lukas M. Simon, Yulin Dai, Peilin Jia, Zhongming Zhao	deCS: A Tool for Systematic Cell Type Annotations of Single-cell RNA Sequencing Data among Human Tissues.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Boyang Shi, Ke An, Yueqin Wang, Yuhan Fei, Caixia Guo, Qiangfeng Cliff Zhang, Yun-Gui Yang, Xin Tian, Quancheng Kan	RNA Structural Dynamics Modulate EGFR-TKI Resistance Through Controlling YRDC Translation in NSCLC Cells.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Lorane Le Franc, Bruno Petton, Pascal Favrel, Guillaume Rivière	m6A Profile Dynamics Indicates Regulation of Oyster Development by m6A-RNA Epitranscriptomes.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Yixiang Shan, Jielong Yang, Xiangtao Li, Xionghu Zhong, Yi Chang 0001	GLAE: A graph-learnable auto-encoder for single-cell RNA-seq analysis.	Inf. Sci.	2023	DBLP DOI BibTeX RDF
10	Yifei Wang, Xue Wang, Cheng Chen, Hongli Gao, Adil Salhi, Xin Gao 0001, Bin Yu 0007	RPI-CapsuleGAN: Predicting RNA-protein interactions through an interpretable generative adversarial capsule network.	Pattern Recognit.	2023	DBLP DOI BibTeX RDF
10	Bertrand Marchand, Sebastian Will, Sarah J. Berkemer, Yann Ponty, Laurent Bulteau	Automated design of dynamic programming schemes for RNA folding with pseudoknots.	Algorithms Mol. Biol.	2023	DBLP DOI BibTeX RDF
10	Hua-Ting Yao, Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler	Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package.	Algorithms Mol. Biol.	2023	DBLP DOI BibTeX RDF
10	Zhaoyang Liu, Kun Fu, Hongsheng Yin 0001, Kaijian Xia, Yuteng Xiao, Honglei Wang, Gangshen Li	Dm6A-TSVM: detection of N6-methyladenosine (m6A) sites from RNA transcriptomes using the twin support vector machines.	J. Ambient Intell. Humaniz. Comput.	2023	DBLP DOI BibTeX RDF
10	Yunfang Wei, Yingzhen Su	Using machine learning and RNA to enhance the efficacy of anti-tumor immunotherapy.	Evol. Intell.	2023	DBLP DOI BibTeX RDF
10	Roiney Beal, Danillo Valverde, Paulo F. B. Gonçalvez, Antonio Carlos Borin	Photophysics of tzAdenine and tzGuanine fluorescent nucleobases embedded into DNA and RNA.	J. Comput. Chem.	2023	DBLP DOI BibTeX RDF
10	Chao Wang, Lin Chen, Wanxia Tang, Bing Zhao, Ruige Wang	Molecular basis of RNA recognition by TBP of HIV-1 from multiple molecular dynamics simulations and energy predictions.	J. Comput. Chem.	2023	DBLP DOI BibTeX RDF
10	Mahroof Kalathingal, Young Min Rhee	Molecular mechanism of binding between a therapeutic RNA aptamer and its protein target VEGF: A molecular dynamics study.	J. Comput. Chem.	2023	DBLP DOI BibTeX RDF
10	Alexander V. Spirov	Evolution of the RNA world: From signals to codes.	Biosyst.	2023	DBLP DOI BibTeX RDF
10	Mandakini Singh, Santosh Kumar	Effect of single nucleotide polymorphisms on the structure of long noncoding RNAs and their interaction with RNA binding proteins.	Biosyst.	2023	DBLP DOI BibTeX RDF
10	Duzhong Zhang, Xiancheng Wen, Chao Yan, Taiyong Li	An image encryption algorithm based on joint RNA-level permutation and substitution.	Multim. Tools Appl.	2023	DBLP DOI BibTeX RDF
10	Ning Wang, Jun Zhang, Bin Liu 0014	iDRBP-EL: Identifying DNA- and RNA- Binding Proteins Based on Hierarchical Ensemble Learning.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Necla Nisa Soylu, Emre Sefer	BERT2OME: Prediction of 2′-O-Methylation Modifications From RNA Sequence by Transformer Architecture Based on BERT.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Bo Li, Ke Jin, Le Ou-Yang, Hong Yan 0001, Xiao-Fei Zhang	scTSSR2: Imputing Dropout Events for Single-Cell RNA Sequencing Using Fast Two-Side Self-Representation.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Kevin Sutanto, Marcel Turcotte	Assessing Global-Local Secondary Structure Fingerprints to Classify RNA Sequences With Deep Learning.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Zhengsen Pan, Shusen Zhou, Tong Liu, Chanjuan Liu, Mujun Zang, Qingjun Wang	WVDL: Weighted Voting Deep Learning Model for Predicting RNA-Protein Binding Sites.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Arnab Kumar Mondal, Indu Joshi, Pravendra Singh, Prathosh AP	Clustering Single-Cell RNA Sequence Data Using Information Maximized and Noise-Invariant Representations.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Yunqi Wan, Zhenran Jiang	TransCrispr: Transformer Based Hybrid Model for Predicting CRISPR/Cas9 Single Guide RNA Cleavage Efficiency.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Zhengsen Pan, Shusen Zhou, Hailin Zou, Chanjuan Liu, Mujun Zang, Tong Liu, Qingjun Wang	MCNN: Multiple Convolutional Neural Networks for RNA-Protein Binding Sites Prediction.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Wen-Yu Xi, Feng Zhou, Ying-Lian Gao, Jin-Xing Liu, Chun-Hou Zheng 0001	LDCMFC: Predicting Long Non-Coding RNA and Disease Association Using Collaborative Matrix Factorization Based on Correntropy.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Yongxian Fan, Guicong Sun, Xiaoyong Pan	ELMo4m6A: A Contextual Language Embedding-Based Predictor for Detecting RNA N6-Methyladenosine Sites.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Taoning Chen, Tingfang Wu, Deng Pan, Jinxing Xie, Jin Zhi, Xuejiao Wang, Lijun Quan, Qiang Lyu	TransRNAm: Identifying Twelve Types of RNA Modifications by an Interpretable Multi-Label Deep Learning Model Based on Transformer.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Ying Zhang 0053, Fang Ge, Fuyi Li, Xibei Yang, Jiangning Song, Dong-Jun Yu	Prediction of Multiple Types of RNA Modifications via Biological Language Model.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Yezi He, Xiangtao Chen, Nguyen Hoang Tu, Jiawei Luo 0001	Deep Multi-Constraint Soft Clustering Analysis for Single-Cell RNA-Seq Data via Zero-Inflated Autoencoder Embedding.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Cunmei Ji, Ning Yu, Yu-Tian Wang, Rong Qi, Chun-Hou Zheng 0001	An End-to-End Deep Hybrid Autoencoder Based Method for Single-Cell RNA-Seq Data Analysis.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Dong Jun Jee, Yixin Kong, Hyonho Chun	Deep Nonnegative Matrix Factorization Using a Variational Autoencoder With Application to Single-Cell RNA Sequencing Data.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Vianney Kengne Tchendji, Franklin Ingrid Kamga Youmbi, Clémentin Tayou Djamégni, Jerry Lacmou Zeutouo	A Parallel Tiled and Sparsified Four-Russians Algorithm for Nussinov's RNA Folding.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Hajin Jeon, Jeongmin Bae, Hyerin Kim, Min-Soo Kim 0002	VPrimer: A Method of Designing and Updating Primer and Probe With High Variant Coverage for RNA Virus Detection.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Fan Rao, Minghan Chen, Defu Yang, Bess Morrell, Qianqian Song, Wentao Zhu	scENT for Revealing Gene Clusters From Single-Cell RNA-Seq Data.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Qiaoming Liu, Dong Wang, Li Zhou, Jie Li 0055, Guohua Wang	MTGDC: A Multi-Scale Tensor Graph Diffusion Clustering for Single-Cell RNA Sequencing Data.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Xiaolin Wang, Hongli Gao, Ren Qi, Ruiqing Zheng, Xin Gao 0001, Bin Yu 0007	scBKAP: A Clustering Model for Single-Cell RNA-Seq Data Based on Bisecting K-Means.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Xinyi Wang, Mingyang Zhang, Chunlin Long, Lin Yao, Min Zhu	Self-Attention Based Neural Network for Predicting RNA-Protein Binding Sites.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Mengyi Tang, Kumbit Hwang, Sung Ha Kang	StemP: A Fast and Deterministic Stem-Graph Approach for RNA Secondary Structure Prediction.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Yeganeh Madadi, Aboozar Monavarfeshani, Hao Chen 0007, W. Daniel Stamer, Robert W. Williams, Siamak Yousefi	Artificial Intelligence Models for Cell Type and Subtype Identification Based on Single-Cell RNA Sequencing Data in Vision Science.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Xiuquan Du, Jiajia Hu	Deep Multi-Label Joint Learning for RNA and DNA-Binding Proteins Prediction.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
10	Mingwei Li, Guanglin Chen, Zhiyong Zhang	Structural and dynamic properties of the YTH domain in complex with N$lt;sup$gt;6$lt;/sup$gt;-methyladenosine RNA studied by accelerated molecular dynamics simulations.	Quant. Biol.	2023	DBLP DOI BibTeX RDF
10	Nan Miles Xi, Angelos Vasilopoulos	Tuning hyperparameters of doublet-detection methods for single-cell RNA sequencing data.	Quant. Biol.	2023	DBLP DOI BibTeX RDF
10	Yuanpeng Xiong, Xuan He, Dan Zhao, Tao Jiang 0001, Jianyang Zeng 0001	DeepRCI: predicting RNA-chromatin interactions via deep learning with multi-omics data.	Quant. Biol.	2023	DBLP DOI BibTeX RDF
10	Steven A. Eschrich, Xiaoqing Yu, Jamie K. Teer	Fast all versus all genotype comparison using DNA/RNA sequencing data: method and workflow.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Anna-Maria Liebhoff, Kevin Menden, Alena Laschtowitz, Andre Franke, Christoph Schramm, Stefan Bonn	Pathogen detection in RNA-seq data with Pathonoia.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Eric Kofman, Brian Yee, Hugo C. Medina-Munoz, Gene W. Yeo	FLARE: a fast and flexible workflow for identifying RNA editing foci.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Zile Wang, Haiyun Wang, Jianping Zhao 0001, Chunhou Zheng	scSemiAAE: a semi-supervised clustering model for single-cell RNA-seq data.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Yue Pan, T. Landis Justin, Razia Moorad, Di Wu, J. S. Marron, Dirk P. Dittmer	The Poisson distribution model fits UMI-based single-cell RNA-sequencing data.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Alvin Farrel, Peng Li, Sharon Veenbergen, Khushbu Patel, John M. Maris, Warren J. Leonard	ROGUE: an R Shiny app for RNA sequencing analysis and biomarker discovery.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Yunqing Liu, Jiayi Zhao, Taylor Sterling Adams, Ningya Wang, Jonas Schupp, Weimiao Wu, John E. McDonough, Geoffrey Lowell Chupp, Naftali Kaminski, Zuoheng Wang, Xiting Yan	Correction: iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Yi Cheng, Xiuli Ma, Lang Yuan, Zhaoguo Sun, Pingzhang Wang	Evaluating imputation methods for single-cell RNA-seq data.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Peter Y. Wang, David P. Bartel	A statistical approach for identifying primary substrates of ZSWIM8-mediated microRNA degradation in small-RNA sequencing data.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Li Guo, Yangyang Xiang, Yuyang Dou, Zibo Yin, Xinru Xu, Lihua Tang, Jiafeng Yu, Jun Wang 0031, Tingming Liang	GBCdb: RNA expression landscapes and ncRNA-mRNA interactions in gallbladder carcinoma.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Yunqing Liu, Jiayi Zhao, Taylor Sterling Adams, Ningya Wang, Jonas Schupp, Weimiao Wu, John E. McDonough, Geoffrey Lowell Chupp, Naftali Kaminski, Zuoheng Wang, Xiting Yan	iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Abdullah Karaaslanli, Satabdi Saha, Tapabrata Maiti, Selin Aviyente	Kernelized multiview signed graph learning for single-cell RNA sequencing data.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Rajnish Kumar, Rajkrishna Mondal, Tapobrata Lahiri, Manoj Kumar Pal	Application of sequence semantic and integrated cellular geography approach to study alternative biogenesis of exonic circular RNA.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Yongxian Fan, Hui Xiong, Guicong Sun	DeepASDPred: a CNN-LSTM-based deep learning method for Autism spectrum disorders risk RNA identification.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Nicholas K. O'Neill, Thor D. Stein, Junming Hu, Habbiburr Rehman, Joshua D. Campbell, Masanao Yajima, Xiaoling Zhang, Lindsay A. Farrer	Bulk brain tissue cell-type deconvolution with bias correction for single-nuclei RNA sequencing data using DeTREM.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Fedor Sharko, Golam Rbbani, Prabhugouda Siriyappagouder, Joost A. M. Raeymaekers, Jorge Galindo-Villegas, Artem Nedoluzhko, Jorge M. O. Fernandes	CircPrime: a web-based platform for design of specific circular RNA primers.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	John K. L. Wong, Lena Jassowicz, Christel Herold-Mende, Martina Seiffert, Jan-Phillip Mallm, Peter Lichter, Marc Zapatka	scSNPdemux: a sensitive demultiplexing pipeline using single nucleotide polymorphisms for improved pooled single-cell RNA sequencing analysis.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Ping Zhang, Weicheng Sun, Dengguo Wei, Guodong Li, Jinsheng Xu, Zhuhong You, Bowei Zhao, Li Li 0057	PDA-PRGCN: identification of Piwi-interacting RNA-disease associations through subgraph projection and residual scaling-based feature augmentation.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Chun-Chi Chen, Yi-Ming Chan	REDfold: accurate RNA secondary structure prediction using residual encoder-decoder network.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Koki Tsuyuzaki, Manabu Ishii, Itoshi Nikaido	Sctensor detects many-to-many cell-cell interactions from single cell RNA-sequencing data.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Airexiati Tuhongjiang, Feng Wang, Chengrong Zhang, Sisi Pang, Yujiang Qu, Bo Feng, Gulimire Amuti	Construction of an RNA modification-related gene predictive model associated with prognosis and immunity in gastric cancer.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Gwangwoo Kim, Hyonho Chun	Similarity-assisted variational autoencoder for nonlinear dimension reduction with application to single-cell RNA sequencing data.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
10	Gabriel Wajnberg, Eric P. Allain, Jeremy W. Roy, Shruti Srivastava, Daniel Saucier, Pier Morin, Alier Marrero, Colleen O'connell, Anirban Ghosh 0003, Stephen M. Lewis, Rodney J. Ouellette, Nicolas Crapoulet	Application of annotation-agnostic RNA sequencing data analysis tools for biomarker discovery in liquid biopsy.	Frontiers Bioinform.	2023	DBLP DOI BibTeX RDF
10	Michel Planat, Marcelo M. Amaral, Klee Irwin	Algebraic Morphology of DNA-RNA Transcription and Regulation.	Symmetry	2023	DBLP DOI BibTeX RDF
10	Qianyue Li, Xin Cheng, Chen Song, Taigang Liu	M6A-BERT-Stacking: A Tissue-Specific Predictor for Identifying RNA N6-Methyladenosine Sites Based on BERT and Stacking Strategy.	Symmetry	2023	DBLP DOI BibTeX RDF
10	Faroza Shamsheem, Tunga Arundhathi, Khaleda Afroaz	Prediction of ncRNA from RNA-Seq data using machine learning techniques.	Int. J. Bioinform. Res. Appl.	2023	DBLP DOI BibTeX RDF
10	Maurizio Grasselli, Luca Scarpa, Andrea Signori	On a Phase Field Model for RNA-Protein Dynamics.	SIAM J. Math. Anal.	2023	DBLP DOI BibTeX RDF
10	Afra Sabei, Talissa Gabriele Caldas Baia, Raphaël Saffar, Juliette Martin, Elisa Frezza	Internal Normal Mode Analysis Applied to RNA Flexibility and Conformational Changes.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
10	Rupesh Agarwal, Rajitha Rajeshwar T., Jeremy C. Smith	Comparative Assessment of Pose Prediction Accuracy in RNA-Ligand Docking.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
10	Saikat Pal, Amit Kumar, Harish Vashisth	Role of Dynamics and Mutations in Interactions of a Zinc Finger Antiviral Protein with CG-rich Viral RNA.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
10	Zakir Ali, Ambika Goyal, Ayush Jhunjhunwala, Abhijit Mitra, John F. Trant, Purshotam Sharma	Structural and Energetic Features of Base-Base Stacking Contacts in RNA.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
10	Rafael Giordano Viegas, Murilo Nogueira Sanches, Alan A. Chen, Fernando V. Paulovich, Angel E. García, Vitor B. P. Leite	Characterizing the Folding Transition-State Ensembles in the Energy Landscape of an RNA Tetraloop.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
10	Giulia Palermo, Thereza A. Soares	Editorial: Editing DNA and RNA through Computations.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
10	Federica Battistini, Alba Sala, Adam Hospital, Modesto Orozco	Sequence-Dependent Properties of the RNA Duplex.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
10	Zeliha Kilic, Max Schweiger, Camille Moyer, Douglas Shepherd, Steve Pressé	Gene expression model inference from snapshot RNA data using Bayesian non-parametrics.	Nat. Comput. Sci.	2023	DBLP DOI BibTeX RDF
10	Dayu Hu, Ke Liang 0006, Sihang Zhou 0001, Wenxuan Tu, Meng Liu 0014, Xinwang Liu 0002	scDFC: A deep fusion clustering method for single-cell RNA-seq data.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
10	Tao Deng, Siyu Chen, Ying Zhang, Yuanbin Xu, Da Feng, Hao Wu 0003, Xiaobo Sun	A cofunctional grouping-based approach for non-redundant feature gene selection in unannotated single-cell RNA-seq analysis.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
10	Natalia A Szulc, Zuzanna Mackiewicz, Janusz M. Bujnicki, Filip Stefaniak	Structural interaction fingerprints and machine learning for predicting and explaining binding of small molecule ligands to RNA.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
10	Yushan Qiu, Chang Yan, Pu Zhao, Quan Zou 0001	SSNMDI: a novel joint learning model of semi-supervised non-negative matrix factorization and data imputation for clustering of single-cell RNA-seq data.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF