Search results for "WABI"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Daichi Shigemizu, Osamu Maruyama	Searching for Regulatory Elements of Alternative Splicing Events Using Phylogenetic Footprinting.	WABI	2004	DBLP DOI BibTeX RDF
1	Jesper Jansson 0001, See-Kiong Ng, Wing-Kin Sung, Hugo Willy	A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations of RNA Sequences Through Alignment.	WABI	2004	DBLP DOI BibTeX RDF
1	Jinbo Xu	Speedup LP Approach to Protein Threading via Graph Reduction.	WABI	2003	DBLP DOI BibTeX RDF
1	Alix Boc, Vladimir Makarenkov	New Efficient Algorithm for Detection of Horizontal Gene Transfer Events.	WABI	2003	DBLP DOI BibTeX RDF
1	Sebastian Böcker	Sequencing from Compomers: Using Mass Spectrometry for DNA De-Novo Sequencing of 200+ nt.	WABI	2003	DBLP DOI BibTeX RDF
1	Boris Hollas, Rainer Schuler	A Stochastic Approach to Count RNA Molecules Using DNA Sequencing Methods.	WABI	2003	DBLP DOI BibTeX RDF
1	Mohamed Ibrahim Abouelhoda, Enno Ohlebusch	A Local Chaining Algorithm and Its Applications in Comparative Genomics.	WABI	2003	DBLP DOI BibTeX RDF
1	Sven Rahmann	Dynamic Programming Algorithms for Two Statistical Problems in Computational Biology.	WABI	2003	DBLP DOI BibTeX RDF
1	Richard Souvenir, Jeremy Buhler, Gary D. Stormo, Weixiong Zhang	Selecting Degenerate Multiplex PCR Primers.	WABI	2003	DBLP DOI BibTeX RDF
1	Bjarne Knudsen	Optimal Multiple Parsimony Alignment with Affine Gap Cost Using a Phylogenetic Tree.	WABI	2003	DBLP DOI BibTeX RDF
1	Nina Amenta, Frederick Clarke, Katherine St. John	A Linear-Time Majority Tree Algorithm.	WABI	2003	DBLP DOI BibTeX RDF
1	Alban Mancheron, Irena Rusu	Pattern Discovery Allowing Wild-Cards, Substitution Matrices, and Multiple Score Functions.	WABI	2003	DBLP DOI BibTeX RDF
1	Paola Bonizzoni, Graziano Pesole, Raffaella Rizzi	A Method to Detect Gene Structure and Alternative Splice Sites by Agreeing ESTs to a Genomic Sequence.	WABI	2003	DBLP DOI BibTeX RDF
1	Gad Kimmel, Roded Sharan, Ron Shamir	Identifying Blocks and Sub-populations in Noisy SNP Data.	WABI	2003	DBLP DOI BibTeX RDF
1	Tetsuo Shibuya, Igor Kurochkin	Match Chaining Algorithms for cDNA Mapping.	WABI	2003	DBLP DOI BibTeX RDF
1	Barbara R. Holland, Vincent Moulton	Consensus Networks: A Method for Visualising Incompatibilities in Collections of Trees.	WABI	2003	DBLP DOI BibTeX RDF
1	Ganeshkumar Ganapathy, Vijaya Ramachandran, Tandy J. Warnow	Better Hill-Climbing Searches for Parsimony.	WABI	2003	DBLP DOI BibTeX RDF
1	Gary Benson	Composition Alignment.	WABI	2003	DBLP DOI BibTeX RDF
1	Jacek Blazewicz, Marcin Jaroszewski	New Algorithm for the Simplified Partial Digest Problem.	WABI	2003	DBLP DOI BibTeX RDF
1	Jan A. Spriet	Side-Chain Structure Prediction Based on Dead-End Elimination: Single Split DEE-criterion Implementation and Elimination Power.	WABI	2003	DBLP DOI BibTeX RDF
1	Gary Benson, Roderic D. M. Page (eds.)	Algorithms in Bioinformatics, Third International Workshop, WABI 2003, Budapest, Hungary, September 15-20, 2003, Proceedings	WABI	2003	DBLP DOI BibTeX RDF
1	Jakob Fredslund, Jotun Hein, Tejs Scharling	A Large Version of the Small Parsimony Problem.	WABI	2003	DBLP DOI BibTeX RDF
1	Gilles Didier	Common Intervals of Two Sequences.	WABI	2003	DBLP DOI BibTeX RDF
1	David Bryant, Daniel H. Huson, Tobias H. Klöpper, Kay Nieselt-Struwe	Distance Corrections on Recombinant Sequences.	WABI	2003	DBLP DOI BibTeX RDF
1	Jahnavi C. Prasad, Michael Silberstein, Carlos J. Camacho, Sandor Vajda	Homology Modeling of Proteins Using Multiple Models and Consensus Sequence Alignment.	WABI	2003	DBLP DOI BibTeX RDF
1	Gerton Lunter, István Miklós, Alexei J. Drummond, Jens Ledet Jensen, Jotun Hein	Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model.	WABI	2003	DBLP DOI BibTeX RDF
1	Paul E. Kearney, J. Ian Munro, Derek Phillips	Efficient Generation of Uniform Samples from Phylogenetic Trees.	WABI	2003	DBLP DOI BibTeX RDF
1	Gerth Stølting Brodal, Rolf Fagerberg, Anna Östlin, Christian N. S. Pedersen, S. Srinivasa Rao 0001	Computing Refined Buneman Trees in Cubic Time.	WABI	2003	DBLP DOI BibTeX RDF
1	Mark Cieliebak, Stephan J. Eidenbenz, Paolo Penna	Noisy Data Make the Partial Digest Problem NP-hard.	WABI	2003	DBLP DOI BibTeX RDF
1	Brona Brejová, Daniel G. Brown 0001, Tomás Vinar	Vector Seeds: An Extension to Spaced Seeds Allows Substantial Improvements in Sensitivity and Specifity.	WABI	2003	DBLP DOI BibTeX RDF
1	Yun S. Song, Jotun Hein	Parsimonious Reconstruction of Sequence Evolution and Haplotype Blocks.	WABI	2003	DBLP DOI BibTeX RDF
1	Dekel Tsur	Bounds for Resquencing by Hybridization.	WABI	2003	DBLP DOI BibTeX RDF
1	Yonatan Aumann, Efrat Manisterski, Zohar Yakhini	Designing Optimally Multiplexed SNP Genotyping Assays.	WABI	2003	DBLP DOI BibTeX RDF
1	Koichiro Doi, Jing Li 0002, Tao Jiang 0001	Minimum Recombiant Haplotype Configuration on Tree Pedigrees.	WABI	2003	DBLP DOI BibTeX RDF
1	Revital Eres, Gad M. Landau, Laxmi Parida	A Combinatorial Approach to Automatic Discovery of Cluster-Patterns.	WABI	2003	DBLP DOI BibTeX RDF	data mining, clusters, patterns, discovery, Design and analysis of algorithms, motifs, combinatorial algorithms on words
1	Itay Lotan, Fabian Schwarzer, Jean-Claude Latombe	Efficient Energy Computation for Monte Carlo Simulation of Proteins.	WABI	2003	DBLP DOI BibTeX RDF
1	Jacques Colinge, Alexandre Masselot, Jérôme Magnin	A Systematic Statistical Analysis of Ion Trap Tandem Mass Spectra in View of Peptide Scoring.	WABI	2003	DBLP DOI BibTeX RDF
1	Louigi Addario-Berry, Benny Chor, Michael T. Hallett, Jens Lagergren, Alessandro Panconesi, Todd Wareham	Ancestral Maximum Likelihood of Evolutionary Trees Is Hard.	WABI	2003	DBLP DOI BibTeX RDF
1	Brona Brejová, Daniel G. Brown 0001, Tomás Vinar	Optimal DNA Signal Recognition Models with a Fixed Amount of Intrasignal Dependency.	WABI	2003	DBLP DOI BibTeX RDF
1	Bernard M. E. Moret, Usman Roshan, Tandy J. Warnow	Sequence-Length Requirements for Phylogenetic Methods.	WABI	2002	DBLP DOI BibTeX RDF
1	Christian N. S. Pedersen, Tejs Scharling	Comparative Methods for Gene Structure Prediction in Homologous Sequences.	WABI	2002	DBLP DOI BibTeX RDF
1	Martin Reczko, Petko Fiziev, Eike Staub, Artemis G. Hatzigeorgiou	Finding Signal Peptides in Human Protein Sequences Using Recurrent Neural Networks.	WABI	2002	DBLP DOI BibTeX RDF
1	Hon Wai Leong, Franco P. Preparata, Wing-Kin Sung, Hugo Willy	On the Control of Hybridization Noise in DNA Sequencing-by-Hybridization.	WABI	2002	DBLP DOI BibTeX RDF
1	Liling L. Warren, Ben Hui Liu	Combinatorial Use of Short Probes for Differential Gene Expression Profiling.	WABI	2002	DBLP DOI BibTeX RDF
1	Sven Rahmann	Rapid Large-Scale Oligonucleotide Selection for Microarrays.	WABI	2002	DBLP DOI BibTeX RDF	oligo selection, probe design, matching statistics, longest common substring, microarray, suffix array
1	Roderic D. M. Page	Modified Mincut Supertrees.	WABI	2002	DBLP DOI BibTeX RDF
1	Luay Nakhleh, Usman Roshan, Lisa Vawter, Tandy J. Warnow	Estimating the Deviation from a Molecular Clock.	WABI	2002	DBLP DOI BibTeX RDF
1	Richard Desper, Olivier Gascuel	Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle.	WABI	2002	DBLP DOI BibTeX RDF
1	Esko Ukkonen	Finding Founder Sequences from a Set of Recombinants.	WABI	2002	DBLP DOI BibTeX RDF
1	Niklas Eriksen	Approximating the Expected Number of Inversions Given the Number of Breakpoints.	WABI	2002	DBLP DOI BibTeX RDF
1	Bernard M. E. Moret, Adam C. Siepel, Jijun Tang, Tao Liu	Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data.	WABI	2002	DBLP DOI BibTeX RDF	genomic distance, inversion, reversal, genome rearrangement, breakpoint
1	Louxin Zhang, Bin Ma 0002, Lusheng Wang 0001	Efficient Methods for Inferring Tandem Duplication History.	WABI	2002	DBLP DOI BibTeX RDF	tandem duplication model, Mucin genes, ZNF genes, olfactory receptors, Algorithm, phylogeny
1	Raymond Wheeler	A Method of Consolidating and Combining EST and mRNA Alignments to a Genome to Enumerate Supported Splice Variants.	WABI	2002	DBLP DOI BibTeX RDF
1	Doron Lipson, Peter Webb, Zohar Yakhini	Designing Specific Oligonucleotide Probes for the Entire S. cerevisiae Transcriptome.	WABI	2002	DBLP DOI BibTeX RDF
1	Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky	Border Length Minimization in DNA Array Design.	WABI	2002	DBLP DOI BibTeX RDF
1	Miklós Csürös, Aleksandar Milosavljevic	Pooled Genomic Indexing (PGI): Mathematical Analysis and Experiment Design.	WABI	2002	DBLP DOI BibTeX RDF
1	Yonatan Bilu, Michal Linial	Functional Consequences in Metabolic Pathways from Phylogenetic Profiles.	WABI	2002	DBLP DOI BibTeX RDF
1	Anne Bergeron, Sylvie Corteel, Mathieu Raffinot	The Algorithmic of Gene Teams.	WABI	2002	DBLP DOI BibTeX RDF
1	David Bryant, Vincent Moulton	NeighborNet: An Agglomerative Method for the Construction of Planar Phylogenetic Networks.	WABI	2002	DBLP DOI BibTeX RDF	SplitsTree, Networks, Hybridization, Phylogenetics, Neighbor-Joining
1	Nathan Edwards, Ross Lippert	Generating Peptide Candidates from Amino-Acid Sequence Databases for Protein Identification via Mass Spectrometry.	WABI	2002	DBLP DOI BibTeX RDF
1	Ehud Shapiro	Invited Lecture - Molecule as Computation: Towards an Abstraction of Biomolecular Systems.	WABI	2002	DBLP DOI BibTeX RDF
1	Russell Schwartz, Andrew G. Clark, Sorin Istrail	Methods for Inferring Block-Wise Ancestral History from Haploid Sequences.	WABI	2002	DBLP DOI BibTeX RDF
1	Piotr Berman, Paul Bertone, Bhaskar DasGupta, Mark Gerstein, Ming-Yang Kao, Michael Snyder 0001	Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search.	WABI	2002	DBLP DOI BibTeX RDF
1	Emily Rocke	A Hybrid Scoring Function for Protein Multiple Alignment.	WABI	2002	DBLP DOI BibTeX RDF
1	Romeo Rizzi, Vineet Bafna, Sorin Istrail, Giuseppe Lancia	Practical Algorithms and Fixed-Parameter Tractability for the Single Individual SNP Haplotyping Problem.	WABI	2002	DBLP DOI BibTeX RDF
1	Aaron L. Halpern, Daniel H. Huson, Knut Reinert	Segment Match Refinement and Applications.	WABI	2002	DBLP DOI BibTeX RDF
1	Li-San Wang	Genome Rearrangement Phylogeny Using Weighbor.	WABI	2002	DBLP DOI BibTeX RDF
1	Roderic Guigó, Dan Gusfield (eds.)	Algorithms in Bioinformatics, Second International Workshop, WABI 2002, Rome, Italy, September 17-21, 2002, Proceedings	WABI	2002	DBLP DOI BibTeX RDF
1	Yasmine Ajana, Jean-François Lefebvre, Elisabeth R. M. Tillier, Nadia El-Mabrouk	Exploring the Set of All Minimal Sequences of Reversals - An Application to Test the Replication-Directed Reversal Hypothesis.	WABI	2002	DBLP DOI BibTeX RDF
1	Steven Skiena, Sagi Snir	Restricting SBH Ambiguity via Restriction Enzymes.	WABI	2002	DBLP DOI BibTeX RDF
1	Ezekiel F. Adebiyi, Michael Kaufmann 0001	Extracting Common Motifs under the Levenshtein Measure: Theory and Experimentation.	WABI	2002	DBLP DOI BibTeX RDF
1	Mihaela Pertea, Steven Salzberg	A Method to Improve the Performance of Translation Start Site Detection and Its Application for Gene Finding.	WABI	2002	DBLP DOI BibTeX RDF
1	Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch	The Enhanced Suffix Array and Its Applications to Genome Analysis.	WABI	2002	DBLP DOI BibTeX RDF
1	Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson	MultiProt - A Multiple Protein Structural Alignment Algorithm.	WABI	2002	DBLP DOI BibTeX RDF
1	Michael H. Goldwasser, Ming-Yang Kao, Hsueh-I Lu	Fast Algorithms for Finding Maximum-Density Segments of a Sequence with Applications to Bioinformatics.	WABI	2002	DBLP DOI BibTeX RDF
1	Gene Myers, Richard Durbin	Invited Lecture - Accelerating Smith-Waterman Searches.	WABI	2002	DBLP DOI BibTeX RDF
1	Dina Duhovny, Ruth Nussinov, Haim J. Wolfson	Efficient Unbound Docking of Rigid Molecules.	WABI	2002	DBLP DOI BibTeX RDF
1	Mariusz Milik, Sándor Szalma, Krzysztof A. Olszewski	FAUST: An Algorithm for Extracting Functionally Relevant Templates from Protein Structures.	WABI	2002	DBLP DOI BibTeX RDF
1	Ziv Bar-Joseph, Erik D. Demaine, David K. Gifford, Angèle M. Hamel, Tommi S. Jaakkola, Nathan Srebro	K-ary Clustering with Optimal Leaf Ordering for Gene Expression Data.	WABI	2002	DBLP DOI BibTeX RDF
1	L. R. Grate, Chiranjib Bhattacharyya, Michael I. Jordan, I. Saira Mian	Simultaneous Relevant Feature Identification and Classification in High-Dimensional Spaces.	WABI	2002	DBLP DOI BibTeX RDF
1	Zhi-Zhong Chen, Tao Jiang 0001, Guo-Hui Lin, Jianjun Wen, Dong Xu 0002, Ying Xu 0001	Improved Approximation Algorithms for NMR Spectral Peak Assignment.	WABI	2002	DBLP DOI BibTeX RDF
1	Olivia Eriksson, Yishao Zhou, Arne Elofsson	Side Chain-Positioning as an Integer Programming Problem.	WABI	2001	DBLP DOI BibTeX RDF
1	Yoseph Barash, Gill Bejerano, Nir Friedman	A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites.	WABI	2001	DBLP DOI BibTeX RDF
1	Benny Chor, Michael D. Hendy, David Penny	Analytic Solutions for Three-Taxon MLMC Trees with Variable Rates Across Sites.	WABI	2001	DBLP DOI BibTeX RDF
1	Herbert Edelsbrunner, Afra Zomorodian	Computing Linking Numbers of a Filtration.	WABI	2001	DBLP DOI BibTeX RDF
1	Steffen Heber, Jens Stoye	Algorithms for Finding Gene Clusters.	WABI	2001	DBLP DOI BibTeX RDF
1	Tal Pupko, Roded Sharan, Masami Hasegawa, Ron Shamir, Dan Graur	A Chemical-Distance-Based Test for Positive Darwinian Selection.	WABI	2001	DBLP DOI BibTeX RDF
1	Thomas Schiex, Patrick Chabrier, Martin Bouchez, Denis Milan	Boosting EM for Radiation Hybrid and Genetic Mapping.	WABI	2001	DBLP DOI BibTeX RDF
1	Will Casey, Bud Mishra, Michael Wigler	Placing Probes along the Genome Using Pairwise Distance Data.	WABI	2001	DBLP DOI BibTeX RDF
1	Niklas Eriksen	(1+epsilon)-Approximation of Sorting by Reversals and Transpositions.	WABI	2001	DBLP DOI BibTeX RDF
1	István Miklós, Zoltán Toroczkai	An Improved Model for Statistical Alignment.	WABI	2001	DBLP DOI BibTeX RDF
1	Li-San Wang	Exact-IEBP: A New Technique for Estimating Evolutionary Distances between Whole Genomes.	WABI	2001	DBLP DOI BibTeX RDF
1	Arun K. Jagota, Rune B. Lyngsø, Christian N. S. Pedersen	Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar.	WABI	2001	DBLP DOI BibTeX RDF
1	Olivier Gascuel, Bernard M. E. Moret (eds.)	Algorithms in Bioinformatics, First International Workshop, WABI 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings	WABI	2001	DBLP DOI BibTeX RDF
1	Luay Nakhleh, Usman Roshan, Katherine St. John, Jerry Sun 0001, Tandy J. Warnow	The Performance of Phylogenetic Methods on Trees of Bounded Diameter.	WABI	2001	DBLP DOI BibTeX RDF
1	Adam C. Siepel, Bernard M. E. Moret	Finding an Optimal Inversion Median: Experimental Results.	WABI	2001	DBLP DOI BibTeX RDF
1	Niklas von Öhsen, Ralf Zimmer	Improving Profile-Profile Alignments via Log Average Scoring.	WABI	2001	DBLP DOI BibTeX RDF
1	Peter J. van der Veen, Lodewyk F. A. Wessels, J. W. Slootstra, R. H. Meloen, Marcel J. T. Reinders, Johannes Hellendoorn	Determination of Binding Amino Acids Based on Random Peptide Array Screening Data.	WABI	2001	DBLP DOI BibTeX RDF
1	Alberto Caprara	On the Practical Solution of the Reversal Median Problem.	WABI	2001	DBLP DOI BibTeX RDF
1	Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton	Comparing Assemblies Using Fragments and Mate-Pairs.	WABI	2001	DBLP DOI BibTeX RDF

Publications at "WABI"( http://dblp.L3S.de/Venues/WABI )