Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
1 | Daichi Shigemizu, Osamu Maruyama |
Searching for Regulatory Elements of Alternative Splicing Events Using Phylogenetic Footprinting. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Jesper Jansson 0001, See-Kiong Ng, Wing-Kin Sung, Hugo Willy |
A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations of RNA Sequences Through Alignment. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Jinbo Xu |
Speedup LP Approach to Protein Threading via Graph Reduction. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Alix Boc, Vladimir Makarenkov |
New Efficient Algorithm for Detection of Horizontal Gene Transfer Events. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Sebastian Böcker |
Sequencing from Compomers: Using Mass Spectrometry for DNA De-Novo Sequencing of 200+ nt. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Boris Hollas, Rainer Schuler |
A Stochastic Approach to Count RNA Molecules Using DNA Sequencing Methods. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Mohamed Ibrahim Abouelhoda, Enno Ohlebusch |
A Local Chaining Algorithm and Its Applications in Comparative Genomics. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Sven Rahmann |
Dynamic Programming Algorithms for Two Statistical Problems in Computational Biology. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Richard Souvenir, Jeremy Buhler, Gary D. Stormo, Weixiong Zhang |
Selecting Degenerate Multiplex PCR Primers. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Bjarne Knudsen |
Optimal Multiple Parsimony Alignment with Affine Gap Cost Using a Phylogenetic Tree. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Nina Amenta, Frederick Clarke, Katherine St. John |
A Linear-Time Majority Tree Algorithm. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Alban Mancheron, Irena Rusu |
Pattern Discovery Allowing Wild-Cards, Substitution Matrices, and Multiple Score Functions. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Paola Bonizzoni, Graziano Pesole, Raffaella Rizzi |
A Method to Detect Gene Structure and Alternative Splice Sites by Agreeing ESTs to a Genomic Sequence. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Gad Kimmel, Roded Sharan, Ron Shamir |
Identifying Blocks and Sub-populations in Noisy SNP Data. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Tetsuo Shibuya, Igor Kurochkin |
Match Chaining Algorithms for cDNA Mapping. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Barbara R. Holland, Vincent Moulton |
Consensus Networks: A Method for Visualising Incompatibilities in Collections of Trees. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Ganeshkumar Ganapathy, Vijaya Ramachandran, Tandy J. Warnow |
Better Hill-Climbing Searches for Parsimony. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Gary Benson |
Composition Alignment. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Jacek Blazewicz, Marcin Jaroszewski |
New Algorithm for the Simplified Partial Digest Problem. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Jan A. Spriet |
Side-Chain Structure Prediction Based on Dead-End Elimination: Single Split DEE-criterion Implementation and Elimination Power. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Gary Benson, Roderic D. M. Page (eds.) |
Algorithms in Bioinformatics, Third International Workshop, WABI 2003, Budapest, Hungary, September 15-20, 2003, Proceedings |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Jakob Fredslund, Jotun Hein, Tejs Scharling |
A Large Version of the Small Parsimony Problem. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Gilles Didier |
Common Intervals of Two Sequences. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | David Bryant, Daniel H. Huson, Tobias H. Klöpper, Kay Nieselt-Struwe |
Distance Corrections on Recombinant Sequences. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Jahnavi C. Prasad, Michael Silberstein, Carlos J. Camacho, Sandor Vajda |
Homology Modeling of Proteins Using Multiple Models and Consensus Sequence Alignment. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Gerton Lunter, István Miklós, Alexei J. Drummond, Jens Ledet Jensen, Jotun Hein |
Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Paul E. Kearney, J. Ian Munro, Derek Phillips |
Efficient Generation of Uniform Samples from Phylogenetic Trees. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Gerth Stølting Brodal, Rolf Fagerberg, Anna Östlin, Christian N. S. Pedersen, S. Srinivasa Rao 0001 |
Computing Refined Buneman Trees in Cubic Time. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Mark Cieliebak, Stephan J. Eidenbenz, Paolo Penna |
Noisy Data Make the Partial Digest Problem NP-hard. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Brona Brejová, Daniel G. Brown 0001, Tomás Vinar |
Vector Seeds: An Extension to Spaced Seeds Allows Substantial Improvements in Sensitivity and Specifity. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Yun S. Song, Jotun Hein |
Parsimonious Reconstruction of Sequence Evolution and Haplotype Blocks. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Dekel Tsur |
Bounds for Resquencing by Hybridization. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Yonatan Aumann, Efrat Manisterski, Zohar Yakhini |
Designing Optimally Multiplexed SNP Genotyping Assays. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Koichiro Doi, Jing Li 0002, Tao Jiang 0001 |
Minimum Recombiant Haplotype Configuration on Tree Pedigrees. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Revital Eres, Gad M. Landau, Laxmi Parida |
A Combinatorial Approach to Automatic Discovery of Cluster-Patterns. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
data mining, clusters, patterns, discovery, Design and analysis of algorithms, motifs, combinatorial algorithms on words |
1 | Itay Lotan, Fabian Schwarzer, Jean-Claude Latombe |
Efficient Energy Computation for Monte Carlo Simulation of Proteins. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Jacques Colinge, Alexandre Masselot, Jérôme Magnin |
A Systematic Statistical Analysis of Ion Trap Tandem Mass Spectra in View of Peptide Scoring. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Louigi Addario-Berry, Benny Chor, Michael T. Hallett, Jens Lagergren, Alessandro Panconesi, Todd Wareham |
Ancestral Maximum Likelihood of Evolutionary Trees Is Hard. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Brona Brejová, Daniel G. Brown 0001, Tomás Vinar |
Optimal DNA Signal Recognition Models with a Fixed Amount of Intrasignal Dependency. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
1 | Bernard M. E. Moret, Usman Roshan, Tandy J. Warnow |
Sequence-Length Requirements for Phylogenetic Methods. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Christian N. S. Pedersen, Tejs Scharling |
Comparative Methods for Gene Structure Prediction in Homologous Sequences. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Martin Reczko, Petko Fiziev, Eike Staub, Artemis G. Hatzigeorgiou |
Finding Signal Peptides in Human Protein Sequences Using Recurrent Neural Networks. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Hon Wai Leong, Franco P. Preparata, Wing-Kin Sung, Hugo Willy |
On the Control of Hybridization Noise in DNA Sequencing-by-Hybridization. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Liling L. Warren, Ben Hui Liu |
Combinatorial Use of Short Probes for Differential Gene Expression Profiling. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Sven Rahmann |
Rapid Large-Scale Oligonucleotide Selection for Microarrays. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
oligo selection, probe design, matching statistics, longest common substring, microarray, suffix array |
1 | Roderic D. M. Page |
Modified Mincut Supertrees. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Luay Nakhleh, Usman Roshan, Lisa Vawter, Tandy J. Warnow |
Estimating the Deviation from a Molecular Clock. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Richard Desper, Olivier Gascuel |
Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Esko Ukkonen |
Finding Founder Sequences from a Set of Recombinants. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Niklas Eriksen |
Approximating the Expected Number of Inversions Given the Number of Breakpoints. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Bernard M. E. Moret, Adam C. Siepel, Jijun Tang, Tao Liu |
Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
genomic distance, inversion, reversal, genome rearrangement, breakpoint |
1 | Louxin Zhang, Bin Ma 0002, Lusheng Wang 0001 |
Efficient Methods for Inferring Tandem Duplication History. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
tandem duplication model, Mucin genes, ZNF genes, olfactory receptors, Algorithm, phylogeny |
1 | Raymond Wheeler |
A Method of Consolidating and Combining EST and mRNA Alignments to a Genome to Enumerate Supported Splice Variants. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Doron Lipson, Peter Webb, Zohar Yakhini |
Designing Specific Oligonucleotide Probes for the Entire S. cerevisiae Transcriptome. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky |
Border Length Minimization in DNA Array Design. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Miklós Csürös, Aleksandar Milosavljevic |
Pooled Genomic Indexing (PGI): Mathematical Analysis and Experiment Design. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Yonatan Bilu, Michal Linial |
Functional Consequences in Metabolic Pathways from Phylogenetic Profiles. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Anne Bergeron, Sylvie Corteel, Mathieu Raffinot |
The Algorithmic of Gene Teams. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | David Bryant, Vincent Moulton |
NeighborNet: An Agglomerative Method for the Construction of Planar Phylogenetic Networks. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
SplitsTree, Networks, Hybridization, Phylogenetics, Neighbor-Joining |
1 | Nathan Edwards, Ross Lippert |
Generating Peptide Candidates from Amino-Acid Sequence Databases for Protein Identification via Mass Spectrometry. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Ehud Shapiro |
Invited Lecture - Molecule as Computation: Towards an Abstraction of Biomolecular Systems. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Russell Schwartz, Andrew G. Clark, Sorin Istrail |
Methods for Inferring Block-Wise Ancestral History from Haploid Sequences. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Piotr Berman, Paul Bertone, Bhaskar DasGupta, Mark Gerstein, Ming-Yang Kao, Michael Snyder 0001 |
Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Emily Rocke |
A Hybrid Scoring Function for Protein Multiple Alignment. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Romeo Rizzi, Vineet Bafna, Sorin Istrail, Giuseppe Lancia |
Practical Algorithms and Fixed-Parameter Tractability for the Single Individual SNP Haplotyping Problem. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Aaron L. Halpern, Daniel H. Huson, Knut Reinert |
Segment Match Refinement and Applications. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Li-San Wang |
Genome Rearrangement Phylogeny Using Weighbor. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Roderic Guigó, Dan Gusfield (eds.) |
Algorithms in Bioinformatics, Second International Workshop, WABI 2002, Rome, Italy, September 17-21, 2002, Proceedings |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Yasmine Ajana, Jean-François Lefebvre, Elisabeth R. M. Tillier, Nadia El-Mabrouk |
Exploring the Set of All Minimal Sequences of Reversals - An Application to Test the Replication-Directed Reversal Hypothesis. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Steven Skiena, Sagi Snir |
Restricting SBH Ambiguity via Restriction Enzymes. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Ezekiel F. Adebiyi, Michael Kaufmann 0001 |
Extracting Common Motifs under the Levenshtein Measure: Theory and Experimentation. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Mihaela Pertea, Steven Salzberg |
A Method to Improve the Performance of Translation Start Site Detection and Its Application for Gene Finding. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch |
The Enhanced Suffix Array and Its Applications to Genome Analysis. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson |
MultiProt - A Multiple Protein Structural Alignment Algorithm. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Michael H. Goldwasser, Ming-Yang Kao, Hsueh-I Lu |
Fast Algorithms for Finding Maximum-Density Segments of a Sequence with Applications to Bioinformatics. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Gene Myers, Richard Durbin |
Invited Lecture - Accelerating Smith-Waterman Searches. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Dina Duhovny, Ruth Nussinov, Haim J. Wolfson |
Efficient Unbound Docking of Rigid Molecules. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Mariusz Milik, Sándor Szalma, Krzysztof A. Olszewski |
FAUST: An Algorithm for Extracting Functionally Relevant Templates from Protein Structures. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Ziv Bar-Joseph, Erik D. Demaine, David K. Gifford, Angèle M. Hamel, Tommi S. Jaakkola, Nathan Srebro |
K-ary Clustering with Optimal Leaf Ordering for Gene Expression Data. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | L. R. Grate, Chiranjib Bhattacharyya, Michael I. Jordan, I. Saira Mian |
Simultaneous Relevant Feature Identification and Classification in High-Dimensional Spaces. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Zhi-Zhong Chen, Tao Jiang 0001, Guo-Hui Lin, Jianjun Wen, Dong Xu 0002, Ying Xu 0001 |
Improved Approximation Algorithms for NMR Spectral Peak Assignment. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
1 | Olivia Eriksson, Yishao Zhou, Arne Elofsson |
Side Chain-Positioning as an Integer Programming Problem. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | Yoseph Barash, Gill Bejerano, Nir Friedman |
A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | Benny Chor, Michael D. Hendy, David Penny |
Analytic Solutions for Three-Taxon MLMC Trees with Variable Rates Across Sites. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | Herbert Edelsbrunner, Afra Zomorodian |
Computing Linking Numbers of a Filtration. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | Steffen Heber, Jens Stoye |
Algorithms for Finding Gene Clusters. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | Tal Pupko, Roded Sharan, Masami Hasegawa, Ron Shamir, Dan Graur |
A Chemical-Distance-Based Test for Positive Darwinian Selection. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | Thomas Schiex, Patrick Chabrier, Martin Bouchez, Denis Milan |
Boosting EM for Radiation Hybrid and Genetic Mapping. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | Will Casey, Bud Mishra, Michael Wigler |
Placing Probes along the Genome Using Pairwise Distance Data. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | Niklas Eriksen |
(1+epsilon)-Approximation of Sorting by Reversals and Transpositions. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | István Miklós, Zoltán Toroczkai |
An Improved Model for Statistical Alignment. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | Li-San Wang |
Exact-IEBP: A New Technique for Estimating Evolutionary Distances between Whole Genomes. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | Arun K. Jagota, Rune B. Lyngsø, Christian N. S. Pedersen |
Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | Olivier Gascuel, Bernard M. E. Moret (eds.) |
Algorithms in Bioinformatics, First International Workshop, WABI 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | Luay Nakhleh, Usman Roshan, Katherine St. John, Jerry Sun 0001, Tandy J. Warnow |
The Performance of Phylogenetic Methods on Trees of Bounded Diameter. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | Adam C. Siepel, Bernard M. E. Moret |
Finding an Optimal Inversion Median: Experimental Results. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | Niklas von Öhsen, Ralf Zimmer |
Improving Profile-Profile Alignments via Log Average Scoring. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | Peter J. van der Veen, Lodewyk F. A. Wessels, J. W. Slootstra, R. H. Meloen, Marcel J. T. Reinders, Johannes Hellendoorn |
Determination of Binding Amino Acids Based on Random Peptide Array Screening Data. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | Alberto Caprara |
On the Practical Solution of the Reversal Median Problem. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|
1 | Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton |
Comparing Assemblies Using Fragments and Mate-Pairs. |
WABI |
2001 |
DBLP DOI BibTeX RDF |
|