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Venues (Conferences, Journals, ...)
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GrowBag graphs for keyword ? (Num. hits/coverage)
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The graphs summarize 2639 occurrences of 1565 keywords
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Results
Found 8097 publication records. Showing 8086 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
18 | David Bray |
Computational approaches to discover and characterize transcription regulatory complex binding from protein-binding microarray-based experiments |
|
2020 |
RDF |
|
18 | Armayau Zango Umar |
Adaptable software reuse: binding time aware modelling language to support variations of feature binding time in software product line engineering. |
|
2020 |
RDF |
|
18 | Lélia Polit |
Régulation de l'expression génique par le facteur de transcription SPI1/PU.1 dans l'érythroleucémie : mécanismes de répression des gènes par sa liaison à l'ADN, conséquences de sa liaison à l'ARN. (Regulation of gene expression by the transcription factor SPI-1/PU.1 in erythroleukemia : mechanisms of gene repression by its binding to DNA, consequences of its binding to RNA). |
|
2020 |
RDF |
|
18 | Wei Wang 0166, Keliang Li, Hehe Lv, Hongjun Zhang, Shiguang Zhang, Yun Zhou, Junwei Huang |
Analyzing the Surface Structure of the Binding Domain on DNA and RNA Binding Proteins. |
IEEE Access |
2019 |
DBLP DOI BibTeX RDF |
|
18 | Dongdong Wang, Jingwei Weng, Wenning Wang |
An unconventional ligand-binding mechanism of substrate-binding proteins: MD simulation and Markov state model analysis of BtuF. |
J. Comput. Chem. |
2019 |
DBLP DOI BibTeX RDF |
|
18 | Mahendra Thapa, Eric Johnson, Mark Rance |
Effect of monovalent ion binding on molecular dynamics of the S100-family calcium-binding protein calbindin D9k. |
J. Comput. Chem. |
2019 |
DBLP DOI BibTeX RDF |
|
18 | Saad Raza, Kara E. Ranaghan, Marc van der Kamp, Christopher J. Woods, Adrian J. Mulholland, Syed Sikander Azam |
Visualizing protein-ligand binding with chemical energy-wise decomposition (CHEWD): application to ligand binding in the kallikrein-8 S1 Site. |
J. Comput. Aided Mol. Des. |
2019 |
DBLP DOI BibTeX RDF |
|
18 | Thomas Litfin, Yuedong Yang, Yaoqi Zhou |
SPOT-Peptide: Template-Based Prediction of Peptide-Binding Proteins and Peptide-Binding Sites. |
J. Chem. Inf. Model. |
2019 |
DBLP DOI BibTeX RDF |
|
18 | Ozlem Erdas-Cicek, Ali Osman Atac, A. Selen Gurkan-Alp, Erdem Buyukbingol, Ferda Nur Alpaslan |
Three-Dimensional Analysis of Binding Sites for Predicting Binding Affinities in Drug Design. |
J. Chem. Inf. Model. |
2019 |
DBLP DOI BibTeX RDF |
|
18 | Joel Wahl, Martin Smiesko |
Assessing the Predictive Power of Relative Binding Free Energy Calculations for Test Cases Involving Displacement of Binding Site Water Molecules. |
J. Chem. Inf. Model. |
2019 |
DBLP DOI BibTeX RDF |
|
18 | Leo William Norval, Stefan Daniel Krämer, Mingjie Gao, Tobias Herz, Jianyu Li, Christin Rath, Johannes Wöhrle, Stefan Günther, Günter Roth |
KOFFI and Anabel 2.0 - a new binding kinetics database and its integration in an open-source binding analysis software. |
Database J. Biol. Databases Curation |
2019 |
DBLP DOI BibTeX RDF |
|
18 | Jan Gosmann, Chris Eliasmith |
Vector-Derived Transformation Binding: An Improved Binding Operation for Deep Symbol-Like Processing in Neural Networks. |
Neural Comput. |
2019 |
DBLP DOI BibTeX RDF |
|
18 | Lei Deng 0002, Youzhi Liu, Yechuan Shi, Hui Liu 0026 |
A deep neural network approach using distributed representations of RNA sequence and structure for identifying binding site of RNA-binding proteins. |
BIBM |
2019 |
DBLP DOI BibTeX RDF |
|
18 | Christina Athanasiou, Sofia Vasilakaki, Dimitris Dellis, Zoe Cournia |
Using physics-based pose predictions and free energy perturbation calculations to predict binding poses and relative binding affinities for FXR ligands in the D3R Grand Challenge 2. |
J. Comput. Aided Mol. Des. |
2018 |
DBLP DOI BibTeX RDF |
|
18 | Junchao Xia, William F. Flynn, Ronald M. Levy |
Improving Prediction Accuracy of Binding Free Energies and Poses of HIV Integrase Complexes Using the Binding Energy Distribution Analysis Method with Flattening Potentials. |
J. Chem. Inf. Model. |
2018 |
DBLP DOI BibTeX RDF |
|
18 | Axel Rudling, Adolfo Orro, Jens Carlsson |
Prediction of Ordered Water Molecules in Protein Binding Sites from Molecular Dynamics Simulations: The Impact of Ligand Binding on Hydration Networks. |
J. Chem. Inf. Model. |
2018 |
DBLP DOI BibTeX RDF |
|
18 | Qi Wu 0016, Zhenling Peng, Yang Zhang 0040, Jianyi Yang |
COACH-D: improved protein-ligand binding sites prediction with refined ligand-binding poses through molecular docking. |
Nucleic Acids Res. |
2018 |
DBLP DOI BibTeX RDF |
|
18 | Dino Franklin |
Molecular Dynamic Simulations Suggest that P152R Mutation Within MeCP2 Can Lead to Higher DNA Binding Affinity and Loss of Selective Binding to Methylated DNA. |
PACBB |
2018 |
DBLP DOI BibTeX RDF |
|
18 | Florentina Tofoleanu, Juyong Lee, Frank C. Pickard IV, Gerhard König, Jing Huang 0004, Minkyung Baek, Chaok Seok, Bernard R. Brooks |
Absolute binding free energies for octa-acids and guests in SAMPL5 - Evaluating binding free energies for octa-acid and guest complexes in the SAMPL5 blind challenge. |
J. Comput. Aided Mol. Des. |
2017 |
DBLP DOI BibTeX RDF |
|
18 | Xianjin Xu, Chengfei Yan, Xiaoqin Zou |
Improving binding mode and binding affinity predictions of docking by ligand-based search of protein conformations: evaluation in D3R grand challenge 2015. |
J. Comput. Aided Mol. Des. |
2017 |
DBLP DOI BibTeX RDF |
|
18 | Soumendranath Bhakat, Pär Söderhjelm |
Resolving the problem of trapped water in binding cavities: prediction of host-guest binding free energies in the SAMPL5 challenge by funnel metadynamics. |
J. Comput. Aided Mol. Des. |
2017 |
DBLP DOI BibTeX RDF |
|
18 | Babitha Machireddy, Gurmannat Kalra, Subash Jonnalagadda, Kandalam Ramanujachary, Chun Wu |
Probing the Binding Pathway of BRACO19 to a Parallel-Stranded Human Telomeric G-Quadruplex Using Molecular Dynamics Binding Simulation with AMBER DNA OL15 and Ligand GAFF2 Force Fields. |
J. Chem. Inf. Model. |
2017 |
DBLP DOI BibTeX RDF |
|
18 | Ka-Chun Wong, Chengbin Peng, Yue Li 0017 |
Evolving Transcription Factor Binding Site Models From Protein Binding Microarray Data. |
IEEE Trans. Cybern. |
2017 |
DBLP DOI BibTeX RDF |
|
18 | Jinan Wang, Zihu Guo, Yingxue Fu, Ziyin Wu, Chao Huang 0030, Chunli Zheng, Piar Ali Shar, Zhenzhong Wang, Wei Xiao, Yonghua Wang |
Weak-binding molecules are not drugs? - toward a systematic strategy for finding effective weak-binding drugs. |
Briefings Bioinform. |
2017 |
DBLP DOI BibTeX RDF |
|
18 | Antonia Stank, Daria B. Kokh, Max Horn, Elena Sizikova, Rebecca Neil, Joanna Panecka, Stefan Richter 0002, Rebecca C. Wade |
TRAPP webserver: predicting protein binding site flexibility and detecting transient binding pockets. |
Nucleic Acids Res. |
2017 |
DBLP DOI BibTeX RDF |
|
18 | Bao Wang, Zhixiong Zhao, Duc Duy Nguyen, Guo-Wei Wei 0001 |
Feature functional theory - binding predictor (FFT-BP) for the blind prediction of binding free energies. |
CoRR |
2017 |
DBLP BibTeX RDF |
|
18 | Prabodh Ranjan, Sivakumar Prasanth Kumar, Vijayakrishna Kari, Prakash Chandra Jha 0002 |
Exploration of interaction zones of β-tubulin colchicine binding domain of helminths and binding mechanism of anthelmintics. |
Comput. Biol. Chem. |
2017 |
DBLP DOI BibTeX RDF |
|
18 | Nohad Gresh, David Perahia, Benoit de Courcy, Johanna Foret, Celine Roux, Lea El-Khoury, Jean-Philip Piquemal, Laurent Salmon |
Complexes of a Zn-metalloenzyme binding site with hydroxamate-containing ligands. A case for detailed benchmarkings of polarizable molecular mechanics/dynamics potentials when the experimental binding structure is unknown. |
J. Comput. Chem. |
2016 |
DBLP DOI BibTeX RDF |
|
18 | Sreeram Krishnan, P. Rani |
Polymorphism in the ligand binding domain of rage alters its binding affinity towards Aβ42 peptides: an in-silico study. |
Int. J. Bioinform. Res. Appl. |
2016 |
DBLP DOI BibTeX RDF |
|
18 | Seungpyo Hong, Dongsup Kim |
Library of binding protein scaffolds (LibBP): a computational platform for selection of binding protein scaffolds. |
Bioinform. |
2016 |
DBLP DOI BibTeX RDF |
|
18 | Ziyi Guo, Brian Yuan Chen |
A map of binding cavity conformations reveals differences in binding specificity. |
BIBM |
2016 |
DBLP DOI BibTeX RDF |
|
18 | Jun-Hwan Huh, Dong-Hyun Kim 0011, Jong-Deok Kim |
oneM2M: Extension of protocol binding: Reuse of binding protocol's legacy services. |
ICOIN |
2016 |
DBLP DOI BibTeX RDF |
|
18 | Santosh Kumar Sahu, Himadri Gourav Behuria, Sangam Gupta, Babita Sahoo |
Sequence Analysis of a Subset of Plasma Membrane Raft Proteome Containing CXXC Metal Binding Motifs: Metal Binding Proteins. |
Int. J. Knowl. Discov. Bioinform. |
2015 |
DBLP DOI BibTeX RDF |
|
18 | Man Hon Wong 0001, Ho-Yin Antonio Sze-To, Leung-Yau Peter Lo, Tak-Ming Cyrus Chan, Kwong-Sak Leung |
Discovering Binding Cores in Protein-DNA Binding Using Association Rule Mining with Statistical Measures. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2015 |
DBLP DOI BibTeX RDF |
|
18 | Xin Ma 0003, Jing Guo, Ke Xiao, Xiao Sun 0006 |
PRBP: Prediction of RNA-Binding Proteins Using a Random Forest Algorithm Combined with an RNA-Binding Residue Predictor. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2015 |
DBLP DOI BibTeX RDF |
|
18 | Emna Harigua-Souiai, Isidro Cortes-Ciriano, Nathan Desdouits, Thérèse E. Malliavin, Ikram Guizani, Michael Nilges, Arnaud Blondel, Guillaume Bouvier |
Identification of binding sites and favorable ligand binding moieties by virtual screening and self-organizing map analysis. |
BMC Bioinform. |
2015 |
DBLP DOI BibTeX RDF |
|
18 | Wenjuan Huang, Nikolay Blinov, David S. Wishart, Andriy Kovalenko 0001 |
Role of Water in Ligand Binding to Maltose-Binding Protein: Insight from a New Docking Protocol Based on the 3D-RISM-KH Molecular Theory of Solvation. |
J. Chem. Inf. Model. |
2015 |
DBLP DOI BibTeX RDF |
|
18 | Quan Van Vuong, Tin Trung Nguyen, Mai Suan Li |
A New Method for Navigating Optimal Direction for Pulling Ligand from Binding Pocket: Application to Ranking Binding Affinity by Steered Molecular Dynamics. |
J. Chem. Inf. Model. |
2015 |
DBLP DOI BibTeX RDF |
|
18 | Maria Pechlaner, Chris Oostenbrink |
Multiple Binding Poses in the Hydrophobic Cavity of Bee Odorant Binding Protein AmelOBP14. |
J. Chem. Inf. Model. |
2015 |
DBLP DOI BibTeX RDF |
|
18 | Chao Yang 0023, Shilei Zhang, Ping He, Congcong Wang, Jian Huang 0004, Peng Zhou 0003 |
Self-Binding Peptides: Folding or Binding? |
J. Chem. Inf. Model. |
2015 |
DBLP DOI BibTeX RDF |
|
18 | Aqeel Ahmed, Richard D. Smith, Jordan J. Clark, James B. Dunbar Jr., Heather A. Carlson |
Recent improvements to Binding MOAD: a resource for protein-ligand binding affinities and structures. |
Nucleic Acids Res. |
2015 |
DBLP DOI BibTeX RDF |
|
18 | Sha He, Hai Zhang, Haihua Liu, Hao Zhu |
LongTarget: a tool to predict lncRNA DNA-binding motifs and binding sites via Hoogsteen base-pairing analysis. |
Bioinform. |
2015 |
DBLP DOI BibTeX RDF |
|
18 | Clifford W. Fong |
Binding energies of tyrosine kinase inhibitors: Error assessment of computational methods for imatinib and nilotinib binding. |
Comput. Biol. Chem. |
2015 |
DBLP DOI BibTeX RDF |
|
18 | Narankhuu Tuvshinjargal, Wook Lee, Byungkyu Park, Kyungsook Han |
Predicting protein-binding RNA nucleotides with consideration of binding partners. |
Comput. Methods Programs Biomed. |
2015 |
DBLP DOI BibTeX RDF |
|
18 | Vincent A. Billock, Brian H. Tsou |
Bridging the Divide between Sensory Integration and Binding Theory: Using a Binding-like Neural Synchronization Mechanism to Model Sensory Enhancements during Multisensory Interactions. |
J. Cogn. Neurosci. |
2014 |
DBLP DOI BibTeX RDF |
|
18 | Huiying Zhao, Yuedong Yang, Mark von Itzstein, Yaoqi Zhou |
Carbohydrate-binding protein identification by coupling structural similarity searching with binding affinity prediction. |
J. Comput. Chem. |
2014 |
DBLP DOI BibTeX RDF |
|
18 | Carmen Maria Livi, Enrico Blanzieri |
Protein-specific prediction of mRNA binding using RNA sequences, binding motifs and predicted secondary structures. |
BMC Bioinform. |
2014 |
DBLP DOI BibTeX RDF |
|
18 | Qian Liu, Steven C. H. Hoi, Chee Keong Kwoh 0001, Limsoon Wong, Jinyan Li 0001 |
Integrating water exclusion theory into βcontacts to predict binding free energy changes and binding hot spots. |
BMC Bioinform. |
2014 |
DBLP DOI BibTeX RDF |
|
18 | Julien Vezoli, Kwamivi Dzahini, Nicolas Costes 0001, Charles R. E. Wilson, Karim Fifel, Howard M. Cooper, Henry Kennedy 0002, Emmanuel Procyk |
Increased DAT binding in the early stage of the dopaminergic lesion: A longitudinal [11C]PE2I binding study in the MPTP-monkey. |
NeuroImage |
2014 |
DBLP DOI BibTeX RDF |
|
18 | Kunihiro Kitamura, Yunoshin Tamura, Tomokazu Ueki, Koji Ogata, Shigeho Noda, Ryutaro Himeno, Hiroshi Chuman |
Binding Free-Energy Calculation Is a Powerful Tool for Drug Optimization: Calculation and Measurement of Binding Free Energy for 7-Azaindole Derivatives to Glycogen Synthase Kinase-3β. |
J. Chem. Inf. Model. |
2014 |
DBLP DOI BibTeX RDF |
|
18 | Ann-Beth Nørholm, Pierre Francotte, Eric Goffin, Iuliana Botez, Laurence Danober, Pierre Lestage, Bernard Pirotte, Jette S. Kastrup, Lars Olsen, Chris Oostenbrink |
Thermodynamic Characterization of New Positive Allosteric Modulators Binding to the Glutamate Receptor A2 Ligand-Binding Domain: Combining Experimental and Computational Methods Unravels Differences in Driving Forces. |
J. Chem. Inf. Model. |
2014 |
DBLP DOI BibTeX RDF |
|
18 | Inbal Paz, Idit Kosti, Manuel Ares, Melissa S. Cline, Yael Mandel-Gutfreund |
RBPmap: a web server for mapping binding sites of RNA-binding proteins. |
Nucleic Acids Res. |
2014 |
DBLP DOI BibTeX RDF |
|
18 | Guzmán Sánchez, David Curiel, Alberto Tárraga, Pedro Molina |
Anion Binding Studies on Receptors Derived from the Indolo[2, 3-a]carbazole Scaffold Having Different Binding Cavity Sizes. |
Sensors |
2014 |
DBLP DOI BibTeX RDF |
|
18 | Shuo Gu, Daniel-Adriano Silva, Luming Meng, Alexander Yue, Xuhui Huang |
Quantitatively Characterizing the Ligand Binding Mechanisms of Choline Binding Protein Using Markov State Model Analysis. |
PLoS Comput. Biol. |
2014 |
DBLP DOI BibTeX RDF |
|
18 | Daniel Cappel, Vassilios Myrianthopoulos, Emmanuel Mikros, Woody Sherman |
Impact of binding site waters on inhibitor design: contemplating a novel inverse binding mode of indirubin derivatives in DYRK kinases. |
J. Cheminformatics |
2014 |
DBLP DOI BibTeX RDF |
|
18 | Yuan Zhu, Weiqiang Zhou, Dao-Qing Dai, Hong Yan 0001 |
Identification of DNA-Binding and Protein-Binding Proteins Using Enhanced Graph Wavelet Features. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2013 |
DBLP DOI BibTeX RDF |
|
18 | Jianyi Yang, Ambrish Roy, Yang Zhang 0040 |
Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. |
Bioinform. |
2013 |
DBLP DOI BibTeX RDF |
|
18 | Ivan V. Kulakovskiy, Victor G. Levitsky, Dmitry Yu. Oshchepkov, Leonid Bryzgalov, Ilya E. Vorontsov, Vsevolod J. Makeev |
From binding motifs in Chip-seq Data to Improved Models of transcription factor binding Sites. |
J. Bioinform. Comput. Biol. |
2013 |
DBLP DOI BibTeX RDF |
|
18 | Vivek Kumar 0003, Masilamani Elizabeth Sobhia |
Characterisation of the flexibility of substrate binding loop in the binding of direct InhA inhibitors. |
Int. J. Comput. Biol. Drug Des. |
2013 |
DBLP DOI BibTeX RDF |
|
18 | Adrien Nicolaï, Patrice Delarue, Patrick Senet |
Decipher the Mechanisms of Protein Conformational Changes Induced by Nucleotide Binding through Free-Energy Landscape Analysis: ATP Binding to Hsp70. |
PLoS Comput. Biol. |
2013 |
DBLP DOI BibTeX RDF |
|
18 | Tzu-Hsien Yang, Wei-Sheng Wu |
Inferring functional transcription factor-gene binding pairs by integrating transcription factor binding data with transcription factor knockout data. |
BMC Syst. Biol. |
2013 |
DBLP DOI BibTeX RDF |
|
18 | Yu-Lin Wang, Chih-Cheng Huang, You-Ren Hsu, Yen-Wen Kang |
Identification of ligand-receptor binding affinity using AlGaN/GaN high electron mobility transistors and binding-site models. |
NEMS |
2013 |
DBLP DOI BibTeX RDF |
|
18 | Ozlem Erdas |
Predicting the binding affinities of drug-protein interaction by analyzing the images of binding sites (Bağlanma alanlarının görüntülerini inceleyerek ilaç-protein etkileşiminin bağlanma eğiliminin tahmin edilmesi) |
|
2013 |
RDF |
|
18 | Julia Meier |
Design, Synthese und Analytik peptidischer CD4-Mimetika sowie Analyse ihrer Bindung an das HIV-Hüllprotein gp120 (Design, Synthesis, Analysis and Binding Assays of Peptides Mimicking the Binding Site of CD4 for HIV Envelope Protein gp120) (PDF / PS) |
|
2013 |
RDF |
|
18 | Kuan-Wei Wu, Po-Chin Chen, Jun Wang 0053, Ying-Chieh Sun |
Computation of relative binding free energy for an inhibitor and its analogs binding with Erk kinase using thermodynamic integration MD simulation. |
J. Comput. Aided Mol. Des. |
2012 |
DBLP DOI BibTeX RDF |
|
18 | Hui Sun Lee, Sunhwan Jo, Hyun-Suk Lim, Wonpil Im |
Application of Binding Free Energy Calculations to Prediction of Binding Modes and Affinities of MDM2 and MDMX Inhibitors. |
J. Chem. Inf. Model. |
2012 |
DBLP DOI BibTeX RDF |
|
18 | Ting-Ying Chien, Chih-Kang Lin, Chih-Wei Lin, Yi-Zhong Weng, Chien-Yu Chen 0001, Darby Tien-Hao Chang |
DBD2BS: connecting a DNA-binding protein with its binding sites. |
Nucleic Acids Res. |
2012 |
DBLP DOI BibTeX RDF |
|
18 | Zhong-Ru Xie, Ming-Jing Hwang |
Ligand-binding site prediction using ligand-interacting and binding site-enriched protein triangles. |
Bioinform. |
2012 |
DBLP DOI BibTeX RDF |
|
18 | |
Securing Binding Update in Mobile IPv6 Using Private Key Base Binding Update Protocol |
CoRR |
2012 |
DBLP BibTeX RDF |
|
18 | Yuchun Guo, Shaun Mahony, David K. Gifford |
High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints. |
PLoS Comput. Biol. |
2012 |
DBLP DOI BibTeX RDF |
|
18 | Hilal Kazan |
Inferring the Binding Preferences of RNA-binding Proteins. |
|
2012 |
RDF |
|
18 | David Schueler |
World Variable Binding and Beta-Binding. |
J. Semant. |
2011 |
DBLP DOI BibTeX RDF |
|
18 | Maxim Totrov |
Ligand binding site superposition and comparison based on Atomic Property Fields: identification of distant homologues, convergent evolution and PDB-wide clustering of binding sites. |
BMC Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
|
18 | Shan He, Luhua Lai |
Molecular Docking and Competitive Binding Study Discovered Different Binding Modes of Microsomal Prostaglandin E Synthase-1 Inhibitors. |
J. Chem. Inf. Model. |
2011 |
DBLP DOI BibTeX RDF |
|
18 | Daniel Cappel, Rickard Wahlström, Ruth Brenk, Christoph A. Sotriffer |
Probing the Dynamic Nature of Water Molecules and Their Influences on Ligand Binding in a Model Binding Site. |
J. Chem. Inf. Model. |
2011 |
DBLP DOI BibTeX RDF |
|
18 | Mohsen Khorshid, Christoph Rodak, Mihaela Zavolan |
CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins. |
Nucleic Acids Res. |
2011 |
DBLP DOI BibTeX RDF |
|
18 | Qian Liu, Steven C. H. Hoi, Chinh T. T. Su, Zhenhua Li, Chee Keong Kwoh 0001, Limsoon Wong, Jinyan Li 0001 |
Structural analysis of the hot spots in the binding between H1N1 HA and the 2D1 antibody: do mutations of H1N1 from 1918 to 2009 affect much on this binding? |
Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
|
18 | Unyanee Poolsap, Yuki Kato, Kengo Sato, Tatsuya Akutsu |
Using binding Profiles to Predict binding sites of Target RNAs. |
J. Bioinform. Comput. Biol. |
2011 |
DBLP DOI BibTeX RDF |
|
18 | Avraham Ben-Shimon, Masha Y. Niv |
Deciphering the Arginine-Binding Preferences at the Substrate-Binding Groove of Ser/Thr Kinases by Computational Surface Mapping. |
PLoS Comput. Biol. |
2011 |
DBLP DOI BibTeX RDF |
|
18 | Tianyun Liu, Russ B. Altman |
Using Multiple Microenvironments to Find Similar Ligand-Binding Sites: Application to Kinase Inhibitor Binding. |
PLoS Comput. Biol. |
2011 |
DBLP DOI BibTeX RDF |
|
18 | Michael Hamilton, A. S. N. Reddy, Asa Ben-Hur |
Kernel methods for Calmodulin binding and binding site prediction. |
BCB |
2011 |
DBLP DOI BibTeX RDF |
|
18 | Wei-Yao Chou, Wei-I Chou, Tun-Wen Pai, Shu-Chuan Lin, Ting-Ying Jiang, Chuan Yi Tang, Margaret Dah-Tsyr Chang |
Feature-incorporated alignment based ligand-binding residue prediction for carbohydrate-binding modules. |
Bioinform. |
2010 |
DBLP DOI BibTeX RDF |
|
18 | Daniel B. Roche, Stuart J. Tetchner, Liam J. McGuffin |
The binding site distance test score: a robust method for the assessment of predicted protein binding sites. |
Bioinform. |
2010 |
DBLP DOI BibTeX RDF |
|
18 | Abhilash Mohan, Sharmila Anishetty, Pennathur Gautam |
Global metal-ion Binding protein Fingerprint: a Method to Identify Motif-Less metal-ion Binding proteins. |
J. Bioinform. Comput. Biol. |
2010 |
DBLP DOI BibTeX RDF |
|
18 | Hilal Kazan, Debashish Ray, Esther T. Chan, Timothy R. Hughes, Quaid Morris |
RNAcontext: A New Method for Learning the Sequence and Structure Binding Preferences of RNA-Binding Proteins. |
PLoS Comput. Biol. |
2010 |
DBLP DOI BibTeX RDF |
|
18 | Oscar Harari, Sun-Yang Park, Henry Huang, Eduardo A. Groisman, Igor Zwir |
Defining the Plasticity of Transcription Factor Binding Sites by Deconstructing DNA Consensus Sequences: The PhoP-Binding Sites among Gamma/Enterobacteria. |
PLoS Comput. Biol. |
2010 |
DBLP DOI BibTeX RDF |
|
18 | Zhiming Dai, Xianhua Dai, Qian Xiang, Jihua Feng |
Nucleosomal Context of Binding Sites Influences Transcription Factor Binding Affinity and Gene Regulation. |
Genom. Proteom. Bioinform. |
2009 |
DBLP DOI BibTeX RDF |
|
18 | Holly Freedman, J. Torin Huzil, Tyler Luchko, Richard F. Luduena, Jack A. Tuszynski |
Identification and Characterization of an Intermediate Taxol Binding Site Within Microtubule Nanopores and a Mechanism for Tubulin Isotype Binding Selectivity. |
J. Chem. Inf. Model. |
2009 |
DBLP DOI BibTeX RDF |
|
18 | Hao Zhang, Ole Lund, Morten Nielsen 0001 |
The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding. |
Bioinform. |
2009 |
DBLP DOI BibTeX RDF |
|
18 | Yue Zhao, David Granas, Gary D. Stormo |
Inferring Binding Energies from Selected Binding Sites. |
PLoS Comput. Biol. |
2009 |
DBLP DOI BibTeX RDF |
|
18 | Matteo Comin, Concettina Guerra, Frank Dellaert |
Binding Balls: Fast Detection of Binding Sites Using a Property of Spherical Fourier Transform. |
J. Comput. Biol. |
2009 |
DBLP DOI BibTeX RDF |
|
18 | Aymeric Devergie, Frédéric Berthommier, Nicolas Grimault |
Pairing audio speech and various visual displays: binding or not binding? |
AVSP |
2009 |
DBLP BibTeX RDF |
|
18 | Ami Yi-Ching Yang, Ricardo L. Mancera |
Molecular dynamics simulations of ligand-induced backbone conformational changes in the binding site of the periplasmic lysine-, arginine-, ornithine-binding protein. |
J. Comput. Aided Mol. Des. |
2008 |
DBLP DOI BibTeX RDF |
|
18 | Jakub Orzechowski Westholm, Feifei Xu, Hans Ronne, Henryk Jan Komorowski |
Genome-scale study of the importance of binding site context for transcription factor binding and gene regulation. |
BMC Bioinform. |
2008 |
DBLP DOI BibTeX RDF |
|
18 | Edward J. Bertaccini, Erik Lindahl, Titia Sixma, James R. Trudell |
Effect of Cobratoxin Binding on the Normal Mode Vibration within Acetylcholine Binding Protein. |
J. Chem. Inf. Model. |
2008 |
DBLP DOI BibTeX RDF |
|
18 | Gerardo Canfora, Massimiliano Di Penta, Raffaele Esposito, Maria Luisa Villani |
A framework for QoS-aware binding and re-binding of composite web services. |
J. Syst. Softw. |
2008 |
DBLP DOI BibTeX RDF |
|
18 | Andrew C. Doxey, Zhenyu Cheng 0002, Brendan J. McConkey |
Discrimination of Insoluble-Carbohydrate Binding Proteins and Their Binding Sites Using a 3D Motif Detection Method. |
BIBM |
2008 |
DBLP DOI BibTeX RDF |
|
18 | Shijun Zhong, Alexander D. MacKerell Jr. |
Binding Response: A Descriptor for Selecting Ligand Binding Site on Protein Surfaces. |
J. Chem. Inf. Model. |
2007 |
DBLP DOI BibTeX RDF |
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18 | Seungwoo Hwang, Zhenkun Gou, Igor B. Kuznetsov |
DP-Bind: a web server for sequence-based prediction of DNA-binding residues in DNA-binding proteins. |
Bioinform. |
2007 |
DBLP DOI BibTeX RDF |
|
18 | Rafael Najmanovich, Abdellah Allali-Hassani, Richard J. Morris, Ludmila Dombrovsky, Patricia W. Pan, Masoud Vedadi, Alexander N. Plotnikov, Aled M. Edwards, Cheryl H. Arrowsmith, Janet M. Thornton |
Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family. |
Bioinform. |
2007 |
DBLP DOI BibTeX RDF |
|
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