Search results for "genome"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
14	Takeaki Uno	An Efficient Algorithm for Finding Similar Short Substrings from Large Scale String Data.	PAKDD	2008	DBLP DOI BibTeX RDF
14	Tun-Wen Pai, Meng-Chang Hsiao, Chien-Ming Chen, Wen-Shyong Tzou, Ron-Shan Chen	An SSR Comparative Genomics Database and Its Applications.	CISIS	2008	DBLP DOI BibTeX RDF
14	Cleber V. G. Mira, Zanoni Dias, Hederson P. Santos, Guilherme A. Pinto, Maria Emília M. T. Walter	Transposition Distance Based on the Algebraic Formalism.	BSB	2008	DBLP DOI BibTeX RDF
14	Ximing Xu, David Sankoff	Tests for Gene Clusters Satisfying the Generalized Adjacency Criterion.	BSB	2008	DBLP DOI BibTeX RDF
14	Alcides Castro-e-Silva, Gerald Weber, Romuel F. Machado, Elizabeth F. Wanner, Renata Guerra-Sá	Identity Transposon Networks in D. melanogaster.	BSB	2008	DBLP DOI BibTeX RDF
14	Claudio Mattiussi, Dario Floreano	Analog Genetic Encoding for the Evolution of Circuits and Networks.	IEEE Trans. Evol. Comput.	2007	DBLP DOI BibTeX RDF
14	Jong Hyun Kim, Michael S. Waterman, Lei M. Li	Accuracy Assessment of Diploid Consensus Sequences.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF	shotgun sequencing, diploid, polymorphism, Haplotype
14	Owen L. Astrachan	Cutting apron strings.	ACM SIGCSE Bull.	2007	DBLP DOI BibTeX RDF
14	Matthew W. B. Trotter, Bernard F. Buxton	Unsupervised Thresholding of Affymetrix Microarray Data.	ICCTA	2007	DBLP DOI BibTeX RDF
14	Jian Ma 0004, Aakrosh Ratan, Louxin Zhang, Webb Miller, David Haussler	A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications.	RECOMB-CG	2007	DBLP DOI BibTeX RDF	gene order reconstruction, contiguous ancestral region, duplication
14	Chunfang Zheng, Qian Zhu 0002, David Sankoff	Parts of the Problem of Polyploids in Rearrangement Phylogeny.	RECOMB-CG	2007	DBLP DOI BibTeX RDF
14	Antonio Piccolboni	Multivariate Segmentation in the Analysis of Transcription Tiling Array Data.	RECOMB	2007	DBLP DOI BibTeX RDF
14	Leelavati Narlikar, Raluca Gordân, Alexander J. Hartemink	Nucleosome Occupancy Information Improves de novo Motif Discovery.	RECOMB	2007	DBLP DOI BibTeX RDF
14	William Arndt, Jijun Tang	Improving Inversion Median Computation Using Commuting Reversals and Cycle Information.	RECOMB-CG	2007	DBLP DOI BibTeX RDF
14	Guoliang Li 0002, Jian Ma 0004, Louxin Zhang	Selecting Genomes for Reconstruction of Ancestral Genomes.	RECOMB-CG	2007	DBLP DOI BibTeX RDF
14	Yufeng Wu	Association Mapping of Complex Diseases with Ancestral Recombination Graphs: Models and Efficient Algorithms.	RECOMB	2007	DBLP DOI BibTeX RDF
14	Sean O'Rourke, Noah Zaitlen, Nebojsa Jojic, Eleazar Eskin	Reconstructing the Phylogeny of Mobile Elements.	RECOMB	2007	DBLP DOI BibTeX RDF
14	Kuo-Yuan Hwa, Hsing-Hsang Hung, Chen-Hsing Chen	Phylogenetic Analysisof Trichomonade Xylosyltransferases.	FBIT	2007	DBLP DOI BibTeX RDF
14	Jonathan Schug, Max Mintz, Christian J. Stoeckert Jr.	Data Integration and Pattern-Finding in Biological Sequence with TESS's Annotation Grammar and Extraction Language (AnGEL).	DILS	2007	DBLP DOI BibTeX RDF
14	Ken Gardiner, James Harland, Margaret Hamilton 0001	A Framework for the Co-evolution of Genes, Proteins and a Genetic Code Within an Artificial Chemistry Reaction Set.	ACAL	2007	DBLP DOI BibTeX RDF
14	Gunnar Tufte, Pauline C. Haddow	Extending Artificial Development: Exploiting Environmental Information for the Achievement of Phenotypic Plasticity.	ICES	2007	DBLP DOI BibTeX RDF
14	Luis Zarza, Josep Pegueroles, Miguel Soriano	Interpretation of Binary Strings as Security Protocols for their Evolution by means of Genetic Algorithms.	DEXA Workshops	2007	DBLP DOI BibTeX RDF
14	Yasubumi Sakakibara, Kiyoshi Asai, Kengo Sato	Stem Kernels for RNA Sequence Analyses.	BIRD	2007	DBLP DOI BibTeX RDF	stem kernel, SVM, secondary structure, RNA, string kernel
14	Lenwood S. Heath, Amrita Pati	Genomic Signatures from DNA Word Graphs.	ISBRA	2007	DBLP DOI BibTeX RDF
14	Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Chi-Kwong Wong, Siu-Ming Yiu	An Experimental Study of Compressed Indexing and Local Alignments of DNA.	COCOA	2007	DBLP DOI BibTeX RDF
14	Maja Bucan	Novel Approaches in Psychiatric Genomics.	WABI	2007	DBLP DOI BibTeX RDF
14	Weidong Mao, Shannon Kelly	An Optimum Random Forest Model for Prediction of Genetic Susceptibility to Complex Diseases.	PAKDD	2007	DBLP DOI BibTeX RDF	association study, complex diseases, prediction, random forest, risk factor, susceptibility
14	Sen Su, Chengwen Zhang, Junliang Chen	An Improved Genetic Algorithm for Web Services Selection.	DAIS	2007	DBLP DOI BibTeX RDF
14	Daniel A. S. Anjos, Gustavo G. Zerlotini, Guilherme A. Pinto, Maria Emília Telles Walter, Marcelo M. Brigido, Guilherme P. Telles, Carlos Juliano M. Viana, Nalvo F. Almeida	A Method for Inferring Biological Functions Using Homologous Genes Among Three Genomes.	BSB	2007	DBLP DOI BibTeX RDF
14	Limor Kozobay-Avraham, Alexander Bolshoy, Zeev Volkovich	On prokaryotes' clustering based on curvature distribution.	Advances in Web Intelligence and Data Mining	2006	DBLP DOI BibTeX RDF
14	Lukas Pichl, Yuji Shimizu	Genetic Evolution of the Ant Species in Function Representation Framework.	SEAL	2006	DBLP DOI BibTeX RDF
14	Sagi Snir, Lior Pachter	Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes.	RECOMB	2006	DBLP DOI BibTeX RDF
14	Jasmin Coulombe-Huntington, Jacek Majewski	Intron Loss Dynamics in Mammals.	Comparative Genomics	2006	DBLP DOI BibTeX RDF	gene structure, mammalian evolution, comparative genomics, introns
14	Akshay Vashist, Casimir A. Kulikowski, Ilya B. Muchnik	Protein Function Annotation Based on Ortholog Clusters Extracted from Incomplete Genomes Using Combinatorial Optimization.	RECOMB	2006	DBLP DOI BibTeX RDF
14	Roman A. Zubarev	Revealing the Proteome Complexity by Mass Spectrometry.	RECOMB	2006	DBLP DOI BibTeX RDF
14		Estimating neutral divergence amongst Mammals for Comparative Genomics with Mammalian scope.	ICIT	2006	DBLP DOI BibTeX RDF
14	Jagath C. Rajapakse, Limsoon Wong, Raj Acharya	Pattern Recognition in Bioinformatics: An Introduction.	PRIB	2006	DBLP DOI BibTeX RDF
14	Grzegorz Rozenberg	Theory Inspired by Gene Assembly in Ciliates.	CIAA	2006	DBLP DOI BibTeX RDF
14	Anantharaman Kalyanaraman, Scott J. Emrich, Patrick S. Schnable, Srinivas Aluru	Assembling genomes on large-scale parallel computers.	IPDPS	2006	DBLP DOI BibTeX RDF
14	Sanghoon Moon, Yanga Byun, Kyungsook Han	Prediction of Readthroughs Based on the Statistical Analysis of Nucleotides Around Stop Codons.	International Conference on Computational Science (1)	2006	DBLP DOI BibTeX RDF
14	Dumitru Brinza, Alexander Zelikovsky	Phasing of 2-SNP Genotypes Based on Non-random Mating Model.	International Conference on Computational Science (2)	2006	DBLP DOI BibTeX RDF
14	Nirmal Ranganathan, Cédric Feschotte, David Levine	Cluster and Grid Based Classification of Transposable Elements in Eukaryotic Genomes.	CCGRID	2006	DBLP DOI BibTeX RDF	In cluster, transposable elements, bioinformatics, distributed workflow
14	Nawei Chen, Hagit Shatkay, Dorothea Blostein	Use of Figures in Literature Mining for Biomedical Digital Libraries.	DIAL	2006	DBLP DOI BibTeX RDF
14	Mengxia Zhu, Qishi Wu, Yunfeng Yang, Jizhong Zhou	A New Approach to Identify Functional Modules Using Random Matrix Theory.	CIBCB	2006	DBLP DOI BibTeX RDF
14	István Miklós, Timothy Brooks Paige, Péter Ligeti	Efficient Sampling of Transpositions and Inverted Transpositions for Bayesian MCMC.	WABI	2006	DBLP DOI BibTeX RDF
14	Te-Wen Hsieh, Huang-Cheng Kuo, Jen-Peng Huang	Filtering Bio-sequence Based on Sequence Descriptor.	BioDM	2006	DBLP DOI BibTeX RDF	Bio-sequence, Sequence Descriptor, Similarity Searching, KNN
14	Deyou Tang, Jianqing Xi, Yubin Guo	Model and Algebra for Genetic Information of Data.	IEA/AIE	2006	DBLP DOI BibTeX RDF
14	Adrianto Wirawan, Bertil Schmidt	Parallel Discovery of Transcription Factor Binding Sites.	APCCAS	2006	DBLP DOI BibTeX RDF
14	Manuel J. Gómez, Ramón Alonso-Allende, Florencio Pazos, Osvaldo Graña, David de Juan, Alfonso Valencia	Accessible Protein Interaction Data for Network Modeling. Structure of the Information and Available Repositories.	Trans. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF
14	Georg Schneider 0003, Heiko Wersing, Bernhard Sendhoff, Edgar Körner	Evolutionary optimization of a hierarchical object recognition model.	IEEE Trans. Syst. Man Cybern. Part B	2005	DBLP DOI BibTeX RDF
14	Lopamudra Roychoudhuri, Ehab S. Al-Shaer	Real-Time Audio Quality Evaluation for Adaptive Multimedia Protocols.	MMNS	2005	DBLP DOI BibTeX RDF
14	David Sankoff, Chunfang Zheng, Aleksander Lenert	Reversals of Fortune.	Comparative Genomics	2005	DBLP DOI BibTeX RDF
14	Anne Bergeron, Julia Mixtacki, Jens Stoye	On Sorting by Translocations.	RECOMB	2005	DBLP DOI BibTeX RDF
14	Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli	An Interaction-Dependent Model for Transcription Factor Binding.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
14	Ari Frank, Stephen Tanner, Pavel A. Pevzner	Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry.	RECOMB	2005	DBLP DOI BibTeX RDF
14	Xia Cao, Beng Chin Ooi, HweeHwa Pang, Kian-Lee Tan, Anthony K. H. Tung	DSIM: A Distance-Based Indexing Method for Genomic Sequences.	BIBE	2005	DBLP DOI BibTeX RDF
14	Wei Shi, Wanlei Zhou 0001	A Parallel Euler Approach for Large-Scale Biological Sequence Assembly.	ICITA (1)	2005	DBLP DOI BibTeX RDF
14	Shamkant B. Navathe	Bioinformatics databases and applications: a challenging landscape.	ACM Southeast Regional Conference (1)	2005	DBLP DOI BibTeX RDF
14	Ruey-Lung Hsiao, Douglas Stott Parker Jr., Hung-chih Yang	Support for BioIndexing in BLASTgres.	DILS	2005	DBLP DOI BibTeX RDF
14	Zu-Guo Yu, Vo Anh, Li-Quan Zhou	Fractal and Dynamical Language Methods to Construct Phylogenetic Tree Based on Protein Sequences from Complete Genomes.	ICNC (3)	2005	DBLP DOI BibTeX RDF
14	Gang Wu, Nabila Bashir-Bello, Stephen J. Freeland	The Synthetic Gene Designer: a Flexible Web Platform to Explore Sequence Space of Synthetic Genes for Heterologous Expression.	CSB Workshops	2005	DBLP DOI BibTeX RDF
14	Natalia Khuri, Nikhila S. Rao	Operon Prediction in Cyanobacteria using Comparative Genomics.	CSB Workshops	2005	DBLP DOI BibTeX RDF
14	Akshay Vashist, Casimir A. Kulikowski, Ilya B. Muchnik	Automatic Protein Function Annotation through Candidate Ortholog Clusters from Incomplete Genomes.	CSB Workshops	2005	DBLP DOI BibTeX RDF
14	Matthew T. Weirauch, Joshua M. Stuart	Discovering Functional Transcription Factor Binding from Superimposed Gene Networks.	CSB Workshops	2005	DBLP DOI BibTeX RDF
14	Xiandong Meng, Vipin Chaudhary	Exploiting Multi-level Parallelism for Homology Search using General Purpose Processors.	ICPADS (2)	2005	DBLP DOI BibTeX RDF
14	Vijaya Smitha Kolli, Hui Liu 0008, Michelle Hong Pan, Yi Pan 0001	A Parallel Implementation for Determining Genomic Distances Under Deletion and Insertion.	International Conference on Computational Science (2)	2005	DBLP DOI BibTeX RDF
14	Jinsun Hong, Kyungsook Han	Prediction of Protein Interactions by the Domain and Sub-cellular Localization Information.	International Conference on Computational Science (3)	2005	DBLP DOI BibTeX RDF
14	Tae-Kyung Kim, Sang-Keun Oh, Kyung-Hee Lee, Dong-Hyun Roh, Wan-Sup Cho	HGBS: a hardware-oriented grid BLAST system.	CCGRID	2005	DBLP DOI BibTeX RDF
14	Oscar García-Hernández, Guillermo López-Campos, Juan Sánchez, Rosa Blanco, Alejandro Romera-López, Beatriz Perez-Villamil, Fernando Martín-Sánchez	Microarray Data Analysis and Management in Colorectal Cancer.	ISBMDA	2005	DBLP DOI BibTeX RDF
14	Nicolas Férey, Pierre-Emmanuel Gros, Joan Hérisson, Rachid Gherbi	Visual data mining of genomic databases by immersive graph-based exploration.	GRAPHITE	2005	DBLP DOI BibTeX RDF	genomic data, graph-based visualization, immersive exploration, human-computer interaction, virtual reality
14	Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson	Dynamic De-Novo Prediction of microRNAs Associated with Cell Conditions: A Search Pruned by Expression.	WABI	2005	DBLP DOI BibTeX RDF
14	Marie-France Sagot, Eric Tannier	Perfect Sorting by Reversals.	COCOON	2005	DBLP DOI BibTeX RDF
14	Joel S. Rozowsky, Paul Bertone, Thomas E. Royce, Sherman Weissman, Michael Snyder 0001, Mark Gerstein	Analysis of Genomic Tiling Microarrays for Transcript Mapping and the Identification of Transcription Factor Binding Sites.	BSB	2005	DBLP DOI BibTeX RDF
14	Guilherme P. Telles, Marcelo M. Brigido, Nalvo F. Almeida, Carlos Juliano M. Viana, Daniel A. S. Anjos, Maria Emília Telles Walter	A Method for Comparing Three Genomes.	BSB	2005	DBLP DOI BibTeX RDF
14	Nicolas Labroche, Christiane Guinot, Gilles Venturini	Fast Unsupervised Clustering with Artificial Ants.	PPSN	2004	DBLP DOI BibTeX RDF
14	David Sankoff, Jean-François Lefebvre, Elisabeth R. M. Tillier, Adrian Maler, Nadia El-Mabrouk	The Distribution of Inversion Lengths in Bacteria.	Comparative Genomics	2004	DBLP DOI BibTeX RDF
14	Rose Hoberman, David Sankoff, Dannie Durand	The Statistical Significance of Max-Gap Clusters.	Comparative Genomics	2004	DBLP DOI BibTeX RDF
14	Bob Mau, Aaron E. Darling, Nicole T. Perna	Identifying Evolutionarily Conserved Segments Among Multiple Divergent and Rearranged Genomes.	Comparative Genomics	2004	DBLP DOI BibTeX RDF
14	Dong Kyue Kim, Junha Jo, Heejin Park	A Fast Algorithm for Constructing Suffix Arrays for Fixed-Size Alphabets.	WEA	2004	DBLP DOI BibTeX RDF
14	Paul Hsueh-Min Chang, Von-Wun Soo, Tai-Yu Chen, Wei-Shen Lai, Shiun-Cheng Su, Yu-Ling Huang	Automating the Determination of Open Reading Frames in Genomic Sequences Using the Web Service Techniques -- A Case Study using SARS Coronavirus.	BIBE	2004	DBLP DOI BibTeX RDF
14	Eric Tannier, Marie-France Sagot	Sorting by Reversals in Subquadratic Time.	CPM	2004	DBLP DOI BibTeX RDF
14	Rumen Andonov, Dominique Lavenier, Philippe Veber, Nicola Yanev	Dynamic Programming for LR-PCR Segmention of Bacterium Genomes.	IPDPS	2004	DBLP DOI BibTeX RDF
14	Shamkant B. Navathe, Upen Patil	Genomic and Proteomic Databases and Applications: A Challenge for Database Technology.	DASFAA	2004	DBLP DOI BibTeX RDF
14	Giancarlo Mauri, Roberto Mosca 0002, Giulio Pavesi	A GA Approach to the Definition of Regulatory Signals in Genomic Sequences.	GECCO (1)	2004	DBLP DOI BibTeX RDF
14	Shu-Yun Le, Jacob V. Maizel Jr., Kaizhong Zhang	An Algorithm for Detecting Homologues of Known Structured RNAs in Genomes.	CSB	2004	DBLP DOI BibTeX RDF	RNA structure similarity, homologous structural RNA search, pattern recognition
14	Sébastien Ferré, Ross D. King	BLID: An Application of Logical Information Systems to Bioinformatics.	ICFCA	2004	DBLP DOI BibTeX RDF
14	Ela Hunt, Neil Hanlon	SyntenyVista.	NordiCHI	2004	DBLP DOI BibTeX RDF	cartoon scaling, synteny, visualization, genomics
14	Tzvika Hartman, Roded Sharan	A 1.5-Approximation Algorithm for Sorting by Transpositions and Transreversals.	WABI	2004	DBLP DOI BibTeX RDF
14	Jens Gramm, Till Nierhoff, Till Tantau	Perfect Path Phylogeny Haplotyping with Missing Data Is Fixed-Parameter Tractable.	IWPEC	2004	DBLP DOI BibTeX RDF
14	Arvind K. Bansal, Christopher Woolverton	Applying Automatically Derived Gene-Groups to Automatically Predict and Refine Metabolic Pathways.	IEEE Trans. Knowl. Data Eng.	2003	DBLP DOI BibTeX RDF	enzymes, gene-groups, microbes, operons, orthologs, pathogenicity, Automation, homologs, drug-discovery, pathway, metabolic pathway, bacteria
14	Jorng-Tzong Horng, Yu-Jan Chang, Baw-Jhiune Liu	Applying evolutionary algorithms to materialized view selection in a data warehouse.	Soft Comput.	2003	DBLP DOI BibTeX RDF	Genetic algorithms, Data warehouses, Genomes, Materialized views
14	Kui Zhang, Fengzhu Sun, Michael S. Waterman, Ting Chen 0006	Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data.	RECOMB	2003	DBLP DOI BibTeX RDF	local maximal haplotypes, tag SNPs, clustering, dynamic programming, haplotype block
14	Arthur M. Lesk	Invited: Prediction of protein function.	RECOMB	2003	DBLP DOI BibTeX RDF
14	Wei-Fu Lu, Wen-Lian Hsu	A Clustering Algorithm for Interval Graph Test on Noisy Data.	WEA	2003	DBLP DOI BibTeX RDF
14	Bud Mishra	Life's Duplicities: Sex, Death, and Valis.	HiPC	2003	DBLP DOI BibTeX RDF
14	Tsai-Hung Fan, Shufen Lee, Hsueh-I Lu, Tsung-Shan Tsou, Tsai-Cheng Wang, Adam Yao	An Optimal Algorithm for Maximum-Sum Segment and Its Application in Bioinformatics Extended Abstract.	CIAA	2003	DBLP DOI BibTeX RDF
14	Cesar Ortega-Sanchez, Jose Torres-Jimenez, Jorge Morales-Cruz	Routing of Embryonic Arrays Using Genetic Algorithms.	ICES	2003	DBLP DOI BibTeX RDF
14	Shoko Miyake, Yukako Tohsato, Yoichi Takenaka, Hideo Matsuda	Clustering Method for Comparative Analysis between Genomes and Pathways.	DASFAA	2003	DBLP DOI BibTeX RDF
14	Tomoyuki Yamada, Shinichi Morishita	Computing Highly Specific and Mismatch Tolerant Oligomers Efficiently.	CSB	2003	DBLP DOI BibTeX RDF
14	Cun-Quan Zhang, Yunkai Liu, Elaine M. Eschen, Keqiang Wu	Identifying Regulatory Signals in DNA-Sequences with a Non-statistical Approximation Approach.	CSB	2003	DBLP DOI BibTeX RDF