Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
16 | David Bryant |
A lower bound for the breakpoint phylogeny problem. |
J. Discrete Algorithms |
2004 |
DBLP DOI BibTeX RDF |
|
16 | David Fernández-Baca, Timo Seppäläinen, Giora Slutzki |
Parametric multiple sequence alignment and phylogeny construction. |
J. Discrete Algorithms |
2004 |
DBLP DOI BibTeX RDF |
|
16 | Eran Halperin, Eleazar Eskin |
Haplotype reconstruction from genotype data using Imperfect Phylogeny. |
Bioinform. |
2004 |
DBLP DOI BibTeX RDF |
|
16 | Jon D. McAuliffe, Lior Pachter, Michael I. Jordan |
Multiple-sequence functional annotation and the generalized hidden Markov phylogeny. |
Bioinform. |
2004 |
DBLP DOI BibTeX RDF |
|
16 | Blake Ives, Michael S. Parks, Jaana Porra, Leiser Silva |
Phylogeny and Power in the IS Domain: A Response to Benbasat and Zmud's Call for Returning to the IT Artifact. |
J. Assoc. Inf. Syst. |
2004 |
DBLP DOI BibTeX RDF |
|
16 | Kampei Miyakawa, Hiroshi Narushima |
Lattice-theoretic properties of MPR-posets in phylogeny. |
Discret. Appl. Math. |
2004 |
DBLP DOI BibTeX RDF |
|
16 | Vineet Bafna, Dan Gusfield, Sridhar Hannenhalli, Shibu Yooseph |
A Note on Efficient Computation of Haplotypes via Perfect Phylogeny. |
J. Comput. Biol. |
2004 |
DBLP DOI BibTeX RDF |
|
16 | Itsik Pe'er, Tal Pupko, Ron Shamir, Roded Sharan |
Incomplete Directed Perfect Phylogeny. |
SIAM J. Comput. |
2004 |
DBLP DOI BibTeX RDF |
|
16 | Hernán Dopazo, Javier Santoyo, Joaquín Dopazo |
Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model species. |
ISMB/ECCB (Supplement of Bioinformatics) |
2004 |
DBLP DOI BibTeX RDF |
|
16 | M. D. Woodhams, Michael D. Hendy |
Reconstructing phylogeny by Quadratically Approximated Maximum Likelihood. |
ISMB/ECCB (Supplement of Bioinformatics) |
2004 |
DBLP DOI BibTeX RDF |
|
16 | Dennis E. Shasha, Jason Tsong-Li Wang, Sen Zhang |
Unordered Tree Mining with Applications to Phylogeny. |
ICDE |
2004 |
DBLP DOI BibTeX RDF |
|
16 | Soren Prag, Josephine C. Adams |
Molecular phylogeny of the kelch-repeat superfamily reveals an expansion of BTB/kelch proteins in animals. |
BMC Bioinform. |
2003 |
DBLP DOI BibTeX RDF |
|
16 | Michael Stolz |
New Philology and New Phylogeny: Aspects of a Critical Electronic Edition of Wolfram's Parzival. |
Lit. Linguistic Comput. |
2003 |
DBLP DOI BibTeX RDF |
|
16 | Ren Hua Chung, Dan Gusfield |
Perfect phylogeny haplotyper: haplotype inferral using a tree model. |
Bioinform. |
2003 |
DBLP DOI BibTeX RDF |
|
16 | Gary W. Stuart, Michael W. Berry |
A Comprehensive Whole Genome Bacterial Phylogeny Using Correlated Peptide Motifs Defined in a High Dimensional Vector Space. |
J. Bioinform. Comput. Biol. |
2003 |
DBLP DOI BibTeX RDF |
|
16 | Vineet Bafna, Dan Gusfield, Giuseppe Lancia, Shibu Yooseph |
Haplotyping as Perfect Phylogeny: A Direct Approach. |
J. Comput. Biol. |
2003 |
DBLP DOI BibTeX RDF |
|
16 | David Fernández-Baca, Jens Lagergren |
A Polynomial-Time Algorithm for Near-Perfect Phylogeny. |
SIAM J. Comput. |
2003 |
DBLP DOI BibTeX RDF |
|
16 | Dan Gusfield |
An Overview of Haplotyping via Perfect Phylogeny: Theory, Algorithms and Programs. |
ICTAI |
2003 |
DBLP DOI BibTeX RDF |
|
16 | Tobias Müller 0001, Sven Rahmann, Thomas Dandekar, Matthias Wolf 0002 |
Robust estimation of the phylogeny of Chlorophyceae(Chlorophyta)based on profile distances. |
German Conference on Bioinformatics |
2003 |
DBLP BibTeX RDF |
|
16 | Celso C. Ribeiro, Dalessandro Soares Vianna |
A genetic algorithm for the phylogeny problem using an optimized crossover strategy based on path-relinking. |
WOB |
2003 |
DBLP BibTeX RDF |
|
16 | Xun Gu, Kent Vander Velden |
DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family. |
Bioinform. |
2002 |
DBLP DOI BibTeX RDF |
|
16 | Wing-Kai Hon, Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu |
Improved Phylogeny Comparisons: Non-Shared Edges Nearest Neighbor Interchanges, and Subtree Transfers |
CoRR |
2002 |
DBLP BibTeX RDF |
|
16 | Alexandre A. Andreatta, Celso C. Ribeiro |
Heuristics for the Phylogeny Problem. |
J. Heuristics |
2002 |
DBLP DOI BibTeX RDF |
|
16 | Richard Desper, Olivier Gascuel |
Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle. |
J. Comput. Biol. |
2002 |
DBLP DOI BibTeX RDF |
|
16 | Richard Desper, Olivier Gascuel |
Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
16 | Li-San Wang |
Genome Rearrangement Phylogeny Using Weighbor. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
16 | Chin Lung Lu, Chuan Yi Tang, Richard Chia-Tung Lee |
The Full Steiner Tree Problem in Phylogeny. |
COCOON |
2002 |
DBLP DOI BibTeX RDF |
|
16 | Graziela S. Araújo, Nalvo F. de Almeida Jr. |
Phylogeny from Whole Genome Comparison. |
WOB |
2002 |
DBLP BibTeX RDF |
|
16 | S. Balaji, S. Sujatha, S. Sai Chetan Kumar, Narayanaswamy Srinivasan |
PALI - a database of Phylogeny and ALIgnment of homologous protein structures. |
Nucleic Acids Res. |
2001 |
DBLP DOI BibTeX RDF |
|
16 | Ming Li 0001, Jonathan H. Badger, Xin Chen, Sam Kwong, Paul E. Kearney, Haoyong Zhang |
An information-based sequence distance and its application to whole mitochondrial genome phylogeny. |
Bioinform. |
2001 |
DBLP DOI BibTeX RDF |
|
16 | Georg Fuellen, Johann-Wolfgang Wägele, Robert Giegerich |
Minimum conflict: a divide-and-conquer approach to phylogeny estimation. |
Bioinform. |
2001 |
DBLP DOI BibTeX RDF |
|
16 | S. Sujatha, S. Balaji, Narayanaswamy Srinivasan |
PALI: a database of alignments and phylogeny of homologous protein structures. |
Bioinform. |
2001 |
DBLP DOI BibTeX RDF |
|
16 | Michael A. Charleston |
Hitch-Hiking: A Parallel Heuristic Search Strategy, Applied to the Phylogeny Problem. |
J. Comput. Biol. |
2001 |
DBLP DOI BibTeX RDF |
|
16 | Junhyong Kim, Benjamin A. Salisbury |
A Tree Obscured By Vines: Horizontal Gene Transfer and the Median Tree Method of Estimating Species Phylogeny. |
Pacific Symposium on Biocomputing |
2001 |
DBLP BibTeX RDF |
|
16 | Steve Oberlin |
"Architecture Recapitulates Phylogeny": How Scalability Requires Specializatio. |
CLUSTER |
2001 |
DBLP DOI BibTeX RDF |
|
16 | Henrik Jönsson |
Variational Methods in Combinatorial Optimization and Phylogeny Reconstruction. |
|
2001 |
RDF |
|
16 | Hans L. Bodlaender, Michael R. Fellows, Michael T. Hallett, Todd Wareham, Tandy J. Warnow |
The hardness of perfect phylogeny, feasible register assignment and other problems on thin colored graphs. |
Theor. Comput. Sci. |
2000 |
DBLP DOI BibTeX RDF |
|
16 | Fred S. Roberts, Li Sheng 0001 |
Phylogeny numbers for graphs with two triangles. |
Discret. Appl. Math. |
2000 |
DBLP DOI BibTeX RDF |
|
16 | Wing-Kai Hon, Ming-Yang Kao, Tak Wah Lam |
Improved Phylogeny Comparisons: Non-shared Edges, Nearest Neighbor Interchanges, and Subtree Transfers. |
ISAAC |
2000 |
DBLP DOI BibTeX RDF |
|
16 | Mary E. Cosner, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Li-San Wang, Tandy J. Warnow, Stacia K. Wyman |
A New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental Phylogenetic Analyses of Real and Synthetic Data. |
ISMB |
2000 |
DBLP BibTeX RDF |
|
16 | David Fernández-Baca, Timo Seppäläinen, Giora Slutzki |
Parametric Multiple Sequence Alignment and Phylogeny Construction. |
CPM |
2000 |
DBLP DOI BibTeX RDF |
|
16 | Peer Bork |
Comparing genes and genomes (abstract): from polymorphism to phylogeny. |
RECOMB |
1999 |
DBLP DOI BibTeX RDF |
|
16 | Marc Rehmsmeier, Martin Vingron |
Phylogeny meets sequence search. |
German Conference on Bioinformatics |
1999 |
DBLP BibTeX RDF |
|
16 | Fred S. Roberts, Li Sheng 0001 |
Phylogeny Numbers. |
Discret. Appl. Math. |
1998 |
DBLP DOI BibTeX RDF |
|
16 | David Fernández-Baca, Jens Lagergren |
On the Approximability of the Steiner Tree Problem in Phylogeny. |
Discret. Appl. Math. |
1998 |
DBLP DOI BibTeX RDF |
|
16 | David Sankoff, Mathieu Blanchette |
Multiple Genome Rearrangement and Breakpoint Phylogeny. |
J. Comput. Biol. |
1998 |
DBLP DOI BibTeX RDF |
|
16 | Martin Vingron |
Alignment and Phylogeny Construction for Biological Sequences. |
IFIP Congress: Fundamentals - Foundations of Computer Science |
1998 |
DBLP BibTeX RDF |
|
16 | Martin Vingron |
Sequence alignment and phylogeny construction. |
Mathematical Support for Molecular Biology |
1998 |
DBLP DOI BibTeX RDF |
|
16 | Hiroshi Narushima, Masazumi Hanazawa |
A More Efficient Algorithm for MPR Problems in Phylogeny. |
Discret. Appl. Math. |
1997 |
DBLP DOI BibTeX RDF |
|
16 | W. Schmidt |
Phylogeny reconstruction from hydrophobicity profiles of Proteins: An Information-theoretic approach. |
German Conference on Bioinformatics |
1997 |
DBLP BibTeX RDF |
|
16 | Kevin Atteson |
The Performance of Neighbor-Joining Algorithms of Phylogeny Recronstruction. |
COCOON |
1997 |
DBLP DOI BibTeX RDF |
|
16 | Paul E. Kearney |
The relationship between a phylogeny and its ordinal assertions. |
|
1997 |
RDF |
|
16 | Lusheng Wang, Tao Jiang 0001, Eugene L. Lawler |
Approximation Algorithms for Tree Alignment with a Given Phylogeny. |
Algorithmica |
1996 |
DBLP DOI BibTeX RDF |
|
16 | Nicolas Galtier, Manolo Gouy, Christian Gautier |
SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. |
Comput. Appl. Biosci. |
1996 |
DBLP DOI BibTeX RDF |
|
16 | Richa Agarwala, David Fernández-Baca |
Simple Algorithms for Perfect Phylogeny and Triangulating Colored Graphs. |
Int. J. Found. Comput. Sci. |
1996 |
DBLP DOI BibTeX RDF |
|
16 | Eduardo Sanchez, Daniel Mange, Moshe Sipper, Marco Tomassini, Andrés Pérez-Uribe, André Stauffer |
Phylogeny, Ontogeny, and Epigenesis: Three Sources of Biological Inspiration for Softening Hardware. |
ICES |
1996 |
DBLP DOI BibTeX RDF |
|
16 | Fred S. Roberts, Li Sheng 0001 |
Phylogeny graphs of arbitrary digraphs. |
Mathematical Hierarchies and Biology |
1996 |
DBLP DOI BibTeX RDF |
|
16 | Kevin Atteson |
The performance of the neighbor-joining method of phylogeny reconstruction. |
Mathematical Hierarchies and Biology |
1996 |
DBLP DOI BibTeX RDF |
|
16 | Carlo Nesti, Giorgio Poli, Milvia Chicca, Piera Ambrosino, Chiara Scapoli, Italo Barrai |
Phylogeny inferred from codon usage pattern in 31 organisms. |
Comput. Appl. Biosci. |
1995 |
DBLP DOI BibTeX RDF |
|
16 | Michael A. Charleston |
Toward a Characterization of Landscapes of Combinatorial Optimization Problems, with Special Attention to the Phylogeny Problem. |
J. Comput. Biol. |
1995 |
DBLP DOI BibTeX RDF |
|
16 | Jeff A. Jones, Katherine A. Yelick |
Parallelizing the Phylogeny Problem. |
SC |
1995 |
DBLP DOI BibTeX RDF |
|
16 | Richa Agarwala, David Fernández-Baca |
A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed. |
SIAM J. Comput. |
1994 |
DBLP DOI BibTeX RDF |
|
16 | John L. Pollock |
The Phylogeny of Rationality. |
Cogn. Sci. |
1993 |
DBLP DOI BibTeX RDF |
|
16 | David Sankoff, R. J. Cedergren, W. McKay |
A strategy for sequence phylogeny research. |
Nucleic Acids Res. |
1982 |
DBLP DOI BibTeX RDF |
|
12 | Ulrich Krohs |
Functions as based on a concept of general design. |
Synth. |
2009 |
DBLP DOI BibTeX RDF |
Malfunction, Biological design, Technical design, Cummins, Millikan, Type fixation, Function |
12 | Roberto Blanco, Elvira Mayordomo |
ZARAMIT: A System for the Evolutionary Study of Human Mitochondrial DNA. |
IWANN (2) |
2009 |
DBLP DOI BibTeX RDF |
|
12 | María Jesús García-Pereira, Humberto Quesada, Armando Caballero |
A First Insight into the In Silico Evaluation of the Accuracy of AFLP Markers for Phylogenetic Reconstruction. |
IWANN (2) |
2009 |
DBLP DOI BibTeX RDF |
AFLP, homoplasy, simulation, accuracy, phylogenetic analysis |
12 | Zaky Adam, David Sankoff |
A Statistically Fair Comparison of Ancestral Genome Reconstructions, Based on Breakpoint and Rearrangement Distances. |
RECOMB-CG |
2009 |
DBLP DOI BibTeX RDF |
|
12 | Bonnie Kirkpatrick, Javier Rosa, Eran Halperin, Richard M. Karp |
Haplotype Inference in Complex Pedigrees. |
RECOMB |
2009 |
DBLP DOI BibTeX RDF |
|
12 | Thomas Eiter, Esra Erdem 0001, Halit Erdogan, Michael Fink 0001 |
Finding Similar or Diverse Solutions in Answer Set Programming. |
ICLP |
2009 |
DBLP DOI BibTeX RDF |
similar/diverse solutions, answer set programming, phylogenies |
12 | Deniz Yörükoglu, Yasin Bakis, Osman Ugur Sezerman |
An entropy based heuristic model for predicting functional sub-type divisions of protein families. |
GECCO (Companion) |
2009 |
DBLP DOI BibTeX RDF |
classification, multiple sequence alignment, protein function |
12 | Minh Duc Cao, Lloyd Allison, Trevor I. Dix |
A Distance Measure for Genome Phylogenetic Analysis. |
Australasian Conference on Artificial Intelligence |
2009 |
DBLP DOI BibTeX RDF |
|
12 | Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson |
Seeded Tree Alignment. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2008 |
DBLP DOI BibTeX RDF |
Graph Theory, Trees, Graph algorithms, Biology and genetics, Computer Applications, Discrete Mathematics, Life and Medical Sciences, Mathematics of Computing |
12 | Michael D. Hendy, Sagi Snir |
Hadamard Conjugation for the Kimura 3ST Model: Combinatorial Proof Using Path Sets. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2008 |
DBLP DOI BibTeX RDF |
Hadamard conjugation, K3ST model, path-sets, phylogenetic invariants, phylogenetic trees |
12 | Sabrina Mantaci, Antonio Restivo, Giovanna Rosone, Marinella Sciortino |
A New Combinatorial Approach to Sequence Comparison. |
Theory Comput. Syst. |
2008 |
DBLP DOI BibTeX RDF |
Sequence comparison, Burrows-Wheeler transform |
12 | Yufeng Wu, Dan Gusfield |
A new recombination lower bound and the minimum perfect phylogenetic forest problem. |
J. Comb. Optim. |
2008 |
DBLP DOI BibTeX RDF |
Lower bound on the minimum number of recombination, Ancestral recombination graph, Computational complexity, Recombination, Population genetics |
12 | Sabine Gillner, Hanspeter A. Mallot |
These Maps Are Made for Walking - Task Hierarchy of Spatial Cognition. |
Robotics and Cognitive Approaches to Spatial Mapping |
2008 |
DBLP DOI BibTeX RDF |
|
12 | Qian Zhu 0002, Zaky Adam, Vicky Choi, David Sankoff |
Generalized Gene Adjacencies, Graph Bandwidth and Clusters in Yeast Evolution. |
ISBRA |
2008 |
DBLP DOI BibTeX RDF |
|
12 | Xintao Wei, Lenore Cowen, Carla E. Brodley, Arthur Brady, D. Sculley, Donna K. Slonim |
A Distance-Based Method for Detecting Horizontal Gene Transfer in Whole Genomes. |
ISBRA |
2008 |
DBLP DOI BibTeX RDF |
|
12 | Tomasz Arodz |
Clustering Organisms Using Metabolic Networks. |
ICCS (2) |
2008 |
DBLP DOI BibTeX RDF |
Graph descriptors, Phylogenetic tree, Metabolic networks |
12 | Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao |
Haplotype Inferring Via Galled-Tree Networks Is NP-Complete. |
COCOON |
2008 |
DBLP DOI BibTeX RDF |
|
12 | Sebastian Böcker, Quang Bao Anh Bui, Anke Truß |
An Improved Fixed-Parameter Algorithm for Minimum-Flip Consensus Trees. |
IWPEC |
2008 |
DBLP DOI BibTeX RDF |
|
12 | Elchanan Mossel |
Distorted Metrics on Trees and Phylogenetic Forests. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2007 |
DBLP DOI BibTeX RDF |
CFN, Jukes-Cantor, metric, tree, distortion, Phylogenetics, forest |
12 | Guillaume Blin, Guillaume Fertin, Irena Rusu, Christine Sinoquet |
Extending the Hardness of RNA Secondary Structure Comparison. |
ESCAPE |
2007 |
DBLP DOI BibTeX RDF |
arc-annotated sequences, NP-hardness, computational biology, edit distance, RNA structures |
12 | Michail Vlachos, Bahar Taneri, Eamonn J. Keogh, Philip S. Yu |
Visual Exploration of Genomic Data. |
PKDD |
2007 |
DBLP DOI BibTeX RDF |
|
12 | William Arndt, Jijun Tang |
Improving Inversion Median Computation Using Commuting Reversals and Cycle Information. |
RECOMB-CG |
2007 |
DBLP DOI BibTeX RDF |
|
12 | Jie Zheng 0002, Igor B. Rogozin, Eugene V. Koonin, Teresa M. Przytycka |
A Rigorous Analysis of the Pattern of Intron Conservation Supports the Coelomata Clade of Animals. |
RECOMB-CG |
2007 |
DBLP DOI BibTeX RDF |
|
12 | Hao Zhao, Guillaume Bourque |
Recovering True Rearrangement Events on Phylogenetic Trees. |
RECOMB-CG |
2007 |
DBLP DOI BibTeX RDF |
|
12 | Iman Tavassoly, Omid Tavassoly, Mohammad Soltany Rezaee Rad, Negar Mottaghi Dastjerdi |
Multifractal Analysis of Chaos Game Representation Images of Mitochondrial DNA. |
FBIT |
2007 |
DBLP DOI BibTeX RDF |
|
12 | Filip Blagojevic, Alexandros Stamatakis, Christos D. Antonopoulos, Dimitrios S. Nikolopoulos |
RAxML-Cell: Parallel Phylogenetic Tree Inference on the Cell Broadband Engine. |
IPDPS |
2007 |
DBLP DOI BibTeX RDF |
|
12 | Carlos A. Brizuela, Elizabeth Luhrs-Olmos |
A team of genetic algorithms for the multiple sequence alignment problem: preliminary results. |
SMC |
2007 |
DBLP DOI BibTeX RDF |
|
12 | Manuel Cebrián, Manuel Alfonseca 0001, Alfonso Ortega 0002 |
Automatic generation of benchmarks for plagiarism detection tools using grammatical evolution. |
GECCO |
2007 |
DBLP DOI BibTeX RDF |
source code plagiarism detection tool assessment, grammatical evolution |
12 | Srinath Sridhar 0001, Fumei Lam, Guy E. Blelloch, R. Ravi 0001, Russell Schwartz |
Efficiently Finding the Most Parsimonious Phylogenetic Tree Via Linear Programming. |
ISBRA |
2007 |
DBLP DOI BibTeX RDF |
|
12 | Nabil Abdennadher, Régis Boesch |
Deploying PHYLIP phylogenetic package on a Large Scale Distributed System. |
CCGRID |
2007 |
DBLP DOI BibTeX RDF |
|
12 | Mohammad Samie, Gabriel Dragffy, Janice Kiely |
Novel Embryonic Array with Neural Network Characteristics. |
AHS |
2007 |
DBLP DOI BibTeX RDF |
|
12 | Waldo Cancino Ticona, Alexandre C. B. Delbem |
A Multi-objective Evolutionary Approach for Phylogenetic Inference. |
EMO |
2007 |
DBLP DOI BibTeX RDF |
Genetic Algorithms, Multi-Objective Optimization, Phylogenetic Inference |
12 | Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson |
Seeded Tree Alignment and Planar Tanglegram Layout. |
WABI |
2007 |
DBLP DOI BibTeX RDF |
|
12 | Yufeng Wu, Dan Gusfield |
A New Recombination Lower Bound and the Minimum Perfect Phylogenetic Forest Problem. |
COCOON |
2007 |
DBLP DOI BibTeX RDF |
|
12 | Hans L. Bodlaender, Michael R. Fellows, Michael A. Langston, Mark A. Ragan, Frances A. Rosamond, Mark Weyer |
Quadratic Kernelization for Convex Recoloring of Trees. |
COCOON |
2007 |
DBLP DOI BibTeX RDF |
Topics Algorithms, Complexity |
12 | Adam C. Siepel, Katherine S. Pollard, David Haussler |
New Methods for Detecting Lineage-Specific Selection. |
RECOMB |
2006 |
DBLP DOI BibTeX RDF |
|