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Venues (Conferences, Journals, ...)
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GrowBag graphs for keyword ? (Num. hits/coverage)
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The graphs summarize 107 occurrences of 66 keywords
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Results
Found 19409 publication records. Showing 19409 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
6 | Qing Ma, Yaqin Tan, Lei Wang |
GACNNMDA: a computational model for predicting potential human microbe-drug associations based on graph attention network and CNN-based classifier. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 35, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Michael Olbrich, Axel Künstner, Hauke Busch |
MBECS: Microbiome Batch Effects Correction Suite. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 182, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Anne Guichard, Fabrice Legeai, Denis Tagu, Claire Lemaitre |
MTG-Link: leveraging barcode information from linked-reads to assemble specific loci. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 284, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Nassim Versbraegen, Barbara Gravel, Charlotte Nachtegael, Alexandre Renaux, Emma Verkinderen, Ann Nowé, Tom Lenaerts, Sofia Papadimitriou |
Faster and more accurate pathogenic combination predictions with VarCoPP2.0. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 179, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Chao Cao, Shuhong Yang, Mengli Li, Chungui Li |
CircSSNN: circRNA-binding site prediction via sequence self-attention neural networks with pre-normalization. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 220, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Fedor Sharko, Golam Rbbani, Prabhugouda Siriyappagouder, Joost A. M. Raeymaekers, Jorge Galindo-Villegas, Artem Nedoluzhko, Jorge M. O. Fernandes |
CircPrime: a web-based platform for design of specific circular RNA primers. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 205, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Junjie Zhang, Guoli Ji, Xilin Gao, Jinting Guan |
Single-nucleus gene and gene set expression-based similarity network fusion identifies autism molecular subtypes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 142, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Xiao Liu 0041, Li Teng, Wenqi Zuo, Shixun Zhong, Yuqiao Xu, Jing Sun |
Deafness gene screening based on a multilevel cascaded BPNN model. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 56, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Anand K. Keshri, Rimanpreet Kaur, Suraj S. Rawat, Naina Arora, Rajan K. Pandey, Bajarang V. Kumbhar, Amit Mishra, Shweta Tripathi, Amit Prasad |
Designing and development of multi-epitope chimeric vaccine against Helicobacter pylori by exploring its entire immunogenic epitopes: an immunoinformatic approach. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 358, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | YaLing Liu, Dan Li, Yong Chen, YiJuan Liu, YiJuan Lin, XunRu Huang, Ting Wu, ChengDang Wang, Jian Ding |
Integrated bioinformatics analysis for conducting a prognostic model and identifying immunotherapeutic targets in gastric cancer. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 191, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Huidong Ma, Cheng Zhong, Danyang Chen, Haofa He, Feng Yang |
cnnLSV: detecting structural variants by encoding long-read alignment information and convolutional neural network. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 119, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Luca Del Core, Danilo Pellin, Ernst C. Wit, Marco Grzegorczyk |
A mixed-effects stochastic model reveals clonal dominance in gene therapy safety studies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 228, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Marta Pelizzola, Ragnhild Laursen, Asger Hobolth |
Model selection and robust inference of mutational signatures using Negative Binomial non-negative matrix factorization. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 187, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Nuo Liu, Tonatiuh A. Gonzalez, Jacob Fischer, Chan Hong, Michelle Johnson, Ross Mawhorter, Fabrizia Mugnatto, Rachael Soh, Shifa Somji, Joseph S. Wirth, Ran Libeskind-Hadas, Eliot C. Bush |
xenoGI 3: using the DTLOR model to reconstruct the evolution of gene families in clades of microbes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 295, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Rongyuan Li, Jingli Wu, Gaoshi Li, Jiafei Liu, Junbo Xuan, Qi Zhu |
Mdwgan-gp: data augmentation for gene expression data based on multiple discriminator WGAN-GP. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 427, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Bin Zhao, Fang Fang, Yiqun Liao, Yuji Chen, Fei Wang, Yichao Ma, Chen Wei, Jiahao Zhao, Hao Ji, Daorong Wang, Dong Tang |
Novel m7G-related lncRNA signature for predicting overall survival in patients with gastric cancer. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 100, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Dario Tommasini, Brent L. Fogel |
multiWGCNA: an R package for deep mining gene co-expression networks in multi-trait expression data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 115, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Kiran Kumar Patro, Allam Jaya Prakash, Umamaheswararao Sanapala, Chaitanya Kumar Marpu, Nagwan M. Abdel Samee, Maali Alabdulhafith, Pawel Plawiak |
An effective correlation-based data modeling framework for automatic diabetes prediction using machine and deep learning techniques. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 372, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | John K. L. Wong, Lena Jassowicz, Christel Herold-Mende, Martina Seiffert, Jan-Phillip Mallm, Peter Lichter, Marc Zapatka |
scSNPdemux: a sensitive demultiplexing pipeline using single nucleotide polymorphisms for improved pooled single-cell RNA sequencing analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 326, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Élise Maigné, Céline Noirot, Julien Henry, Yaa Adu Kesewaah, Ludovic Badin, Sébastien Déjean, Camille Guilmineau, Arielle Krebs, Fanny Mathevet, Audrey Segalini, Laurent Thomassin, David Colongo, Christine Gaspin, Laurence Liaubet, Nathalie Vialaneix |
Asterics: a simple tool for the ExploRation and Integration of omiCS data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 391, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Rishab Jain, Aditya Jain, Elizabeth Mauro, Kevin LeShane, Douglas Densmore |
ICOR: improving codon optimization with recurrent neural networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 132, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Golam Md Mortuza, Jorge Guerrero, Shoshanna Llewellyn, Michael D. Tobiason, George D. Dickinson, William L. Hughes, Reza Zadegan, Tim Andersen |
In-vitro validated methods for encoding digital data in deoxyribonucleic acid (DNA). ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 160, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Lisa Fiedler, Matthias Bernt, Martin Middendorf, Peter F. Stadler |
Detecting gene breakpoints in noisy genome sequences using position-annotated colored de-Bruijn graphs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 235, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Ping Zhang, Weicheng Sun, Dengguo Wei, Guodong Li, Jinsheng Xu, Zhuhong You, Bowei Zhao, Li Li 0057 |
PDA-PRGCN: identification of Piwi-interacting RNA-disease associations through subgraph projection and residual scaling-based feature augmentation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 18, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Cong Ji, Junbin Shao |
Shine: A novel strategy to extract specific, sensitive and well-conserved biomarkers from massive microbial genomic datasets. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 128, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Chun-Chi Chen, Yi-Ming Chan |
REDfold: accurate RNA secondary structure prediction using residual encoder-decoder network. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 122, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Darren A. V. Scott, Ernest D. Benavente, Julian Libiseller-Egger, Dmitry V. Fedorov, Jody Phelan, Elena Ilina, Polina O. Tikhonova, Alexander Kudryavstev, Julia Galeeva, Taane G. Clark, Alex Lewin |
Bayesian compositional regression with microbiome features via variational inference. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 210, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Yuya Hatano, Tomohiko Ishihara, Osamu Onodera |
Accuracy of a machine learning method based on structural and locational information from AlphaFold2 for predicting the pathogenicity of TARDBP and FUS gene variants in ALS. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 206, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Hanhan Cong, Hong Liu 0013, Yi Cao, Cheng Liang, Yuehui Chen |
Protein-protein interaction site prediction by model ensembling with hybrid feature and self-attention. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 456, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Suraiya Akhter, John H. Miller |
BaPreS: a software tool for predicting bacteriocins using an optimal set of features. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 313, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Irene Ortega-Sanz, José Antonio Barbero-Aparicio, Antonio Canepa-Oneto, Jordi Rovira, Beatriz Melero |
CamPype: an open-source workflow for automated bacterial whole-genome sequencing analysis focused on Campylobacter. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 291, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Mitja Briscik, Marie-Agnès Dillies, Sébastien Déjean |
Improvement of variables interpretability in kernel PCA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 282, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Mona Shafaghi, Zohreh Bahadori, Hamid Madanchi, Mohammad Mehdi Ranjbar, Ali Akbar Shabani, Seyed Fazlollah Mousavi |
Immunoinformatics-aided design of a new multi-epitope vaccine adjuvanted with domain 4 of pneumolysin against Streptococcus pneumoniae strains. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 67, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | He Li, Lei Yang, Yuanyuan Wang, Lingchan Wang, Gang Chen, Li Zhang, Dongchang Wang |
Integrative analysis of TP53 mutations in lung adenocarcinoma for immunotherapies and prognosis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 155, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
6 | Zhiwen Lu, Lu Guo, Jianhua Chen, Rongshu Wang |
Reference-based genome compression using the longest matched substrings with parallelization consideration. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 369, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Koki Tsuyuzaki, Manabu Ishii, Itoshi Nikaido |
Sctensor detects many-to-many cell-cell interactions from single cell RNA-sequencing data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 420, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Renliang Zhang, Guanqing Jia, Xianmin Diao |
geneHapR: an R package for gene haplotypic statistics and visualization. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 199, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Behrouz Bokharaeian, Mohammad Dehghani, Alberto Díaz 0001 |
Automatic extraction of ranked SNP-phenotype associations from text using a BERT-LSTM-based method. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 144, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Graham Alvare, Abiel Roche-Lima, Brian Fristensky |
BioLegato: a programmable, object-oriented graphic user interface. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 316, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Thomas Binet, Séverine Padiolleau-Lefèvre, Stéphane Octave, Bérangère Avalle, Irene Maffucci |
Comparative Study of Single-stranded Oligonucleotides Secondary Structure Prediction Tools. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 422, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Binyou Wang, Jianmin Guo, Xiaofeng Liu, Yang Yu, Jianming Wu, Yiwei Wang |
Prediction of the effects of small molecules on the gut microbiome using machine learning method integrating with optimal molecular features. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 338, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Miaoshan Lu, Hengxuan Jiang, Ruimin Wang, Shaowei An, Jiawei Wang, Changbin Yu |
Injectiondesign: web service of plate design with optimized stratified block randomization for modern GC/LC-MS-based sample preparation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 489, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Zhichao Hou, Jiacheng Leng, Jiating Yu, Zheng Xia, Ling-Yun Wu |
PathExpSurv: pathway expansion for explainable survival analysis and disease gene discovery. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 434, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Adrià Caballé-Mestres, Antoni Berenguer-Llergo, Camille Stephan-Otto Attolini |
Roastgsa: a comparison of rotation-based scores for gene set enrichment analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 408, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Ho Yin Yuen, Jesper Jansson 0001 |
Normalized L3-based link prediction in protein-protein interaction networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 59, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Mikhail Gudkov, Loïc Thibaut, Matloob Khushi, Gillian M. Blue, David S. Winlaw, Sally L. Dunwoodie, Eleni Giannoulatou |
ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole-genome sequencing data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 49, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Sz-Wei Chu, Feng-Sheng Wang |
Fuzzy optimization for identifying antiviral targets for treating SARS-CoV-2 infection in the heart. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 364, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Shuya Nakata, Yoshiharu Mori, Shigenori Tanaka |
End-to-end protein-ligand complex structure generation with diffusion-based generative models. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 233, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Jérémie Scire, Jana S. Huisman, Ana Grosu, Daniel C. Angst, Adrian Lison, Jinzhou Li, Marloes H. Maathuis, Sebastian Bonhoeffer, Tanja Stadler |
estimateR: an R package to estimate and monitor the effective reproductive number. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 310, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Weiwei Qian, Jian Zhou, Songtao Shou |
Exploration of m6A methylation regulators as epigenetic targets for immunotherapy in advanced sepsis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 257, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Jinghan Yang, Yuyang Xu, Minhao Yao, Gao Wang, Zhonghua Liu |
ERStruct: a fast Python package for inferring the number of top principal components from whole genome sequencing data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 180, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Chen Zhou 0004, Shuaijian Dai, Shengzhi Lai, Yuanqiao Lin, Xuechen Zhang 0002, Ning Li, Weichuan Yu |
ECL 3.0: a sensitive peptide identification tool for cross-linking mass spectrometry data analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 351, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Yesol Sapozhnikov, Jagdish Suresh Patel, F. Marty Ytreberg, Craig R. Miller |
Statistical modeling to quantify the uncertainty of FoldX-predicted protein folding and binding stability. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 426, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Erik Huckvale, Hunter N. B. Moseley |
kegg_pull: a software package for the RESTful access and pulling from the Kyoto Encyclopedia of Gene and Genomes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 78, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Øystein Øvrebø, Miina Ojansivu, Kimmo Kartasalo, Hanna M. G. Barriga, Petter Ranefall, Margaret N. Holme, Molly M. Stevens |
RegiSTORM: channel registration for multi-color stochastic optical reconstruction microscopy. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 237, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Shuwen Hu, Yi Jing, Tao Li, You-Gan Wang, Zhenyu Liu, Jing Gao 0006, Yu-Chu Tian |
Inferring circadian gene regulatory relationships from gene expression data with a hybrid framework. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 362, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Pasquale Claudio Africa, Roberto Piersanti, Marco Fedele, Luca Dede', Alfio Quarteroni |
lifex-fiber: an open tool for myofibers generation in cardiac computational models. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 143, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Joungmin Choi, Heejoon Chae |
moBRCA-net: a breast cancer subtype classification framework based on multi-omics attention neural networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 169, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Georgios Argyris, Alberto Lluch-Lafuente, Mirco Tribastone, Max Tschaikowski, Andrea Vandin |
Reducing Boolean networks with backward equivalence. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 212, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Lior I. Shachaf, Elijah Roberts, Patrick Cahan, Jie Xiao |
Gene regulation network inference using k-nearest neighbor-based mutual information estimation: revisiting an old DREAM. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 84, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Zequn Zheng, Yongfei Song |
Integrated analysis of the voltage-gated potassium channel-associated gene KCNH2 across cancers. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 51, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Elena Pianfetti, Marta Lovino, Elisa Ficarra, Loredana Martignetti |
MiREx: mRNA levels prediction from gene sequence and miRNA target knowledge. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 443, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Aysam Guerler, Dannon Baker, Marius van den Beek, Björn A. Grüning, Dave Bouvier, Nate Coraor, Stephen D. Shank, Jordan D. Zehr, Michael C. Schatz, Anton Nekrutenko |
Fast and accurate genome-wide predictions and structural modeling of protein-protein interactions using Galaxy. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 263, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Jingli Wu, Qinghua Nie, Gaoshi Li, Kai Zhu |
Identifying driver pathways based on a parameter-free model and a partheno-genetic algorithm. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 211, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Ruowen Li, Wenjie Qu 0003, Qingqing Liu, Yilin Tan, Wenjing Zhang, Yiping Hao, Nan Jiang, Zhonghao Mao, Jinwen Ye, Jun Jiao, Qun Gao, Baoxia Cui, Taotao Dong |
Development and validation of a deep learning survival model for cervical adenocarcinoma patients. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 146, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Jose Laborde, Paul A. Stewart, Zhihua Chen, Yian A. Chen, Naomi C. Brownstein |
Sparse clusterability: testing for cluster structure in high dimensions. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 125, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Ali Al-Fatlawi, Eka Rusadze, Alexander Shmelkin, Negin Malekian, Cigdem Ozen, Christian Pilarsky, Michael Schroeder 0001 |
Netrank: network-based approach for biomarker discovery. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 304, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Brijesh Kumar Sriwastava, Anup Kumar Halder, Subhadip Basu, Tapabrata Chakraborti |
RUBic: rapid unsupervised biclustering. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 435, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Ho-min Park, Jongbum Won, Yunseol Park, Esla Timothy Anzaku, Joris Vankerschaver, Arnout Van Messem, Wesley De Neve, Hyunjin Shim |
CRISPR-Cas-Docker: web-based in silico docking and machine learning-based classification of crRNAs with Cas proteins. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 167, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Hua Zhong, Jing Luo, Lin Tang, Shicheng Liao, Zhonghao Lu, Guoliang Lin, Robert W. Murphy, Lin Liu |
Association filtering and generative adversarial networks for predicting lncRNA-associated disease. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 234, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Huancheng Fu, Ce Shan, Fanchen Kang, Ling Yu, Zhonghan Li, Yike Yin |
CRISPR-GRANT: a cross-platform graphical analysis tool for high-throughput CRISPR-based genome editing evaluation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 219, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Rohan S. Mehta, Robert Petit, Timothy D. Read, Daniel B. Weissman |
Detecting patterns of accessory genome coevolution in Staphylococcus aureus using data from thousands of genomes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 243, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Tony Hauptmann, Stefan Kramer |
A fair experimental comparison of neural network architectures for latent representations of multi-omics for drug response prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 45, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Danyi Chen, Xiaowen Wang, Hongming Zhu, Yizhi Jiang, Yulong Li, Qi Liu, Qin Liu |
Predicting anticancer synergistic drug combinations based on multi-task learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 448, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Yaru Hao, Xiao-Yuan Jing, Qixing Sun |
Cancer survival prediction by learning comprehensive deep feature representation for multiple types of genetic data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 267, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Hoseung Song, Wodan Ling, Ni Zhao, Anna M. Plantinga, Courtney A. Broedlow, Nichole R. Klatt, Tiffany Hensley-McBain, Michael C. Wu |
Accommodating multiple potential normalizations in microbiome associations studies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 22, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Luigi Di Biasi, Fabiola De Marco, Alessia Auriemma Citarella, Modesto Castrillón Santana, Paola Barra, Genoveffa Tortora |
Refactoring and performance analysis of the main CNN architectures: using false negative rate minimization to solve the clinical images melanoma detection problem. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 386, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Yu Chen, Lixin Gao, Tianjiao Zhang |
Stack-VTP: prediction of vesicle transport proteins based on stacked ensemble classifier and evolutionary information. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 137, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Anjana Senanayake, Hasindu Gamaarachchi, Damayanthi Herath, Roshan G. Ragel |
DeepSelectNet: deep neural network based selective sequencing for oxford nanopore sequencing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 31, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Irena Roterman, Katarzyna Stapor, Leszek Konieczny |
Role of environmental specificity in CASP results. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 425, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Junjun Zhang, Minzhu Xie |
Graph regularized non-negative matrix factorization with L2,1 norm regularization terms for drug-target interactions prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 375, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Xiaoyu Yu |
Genofunc: genome annotation and identification of genome features for automated pipelining analysis of virus whole genome sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 218, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Junyao Kuang, Kristin Michel, Caterina M. Scoglio |
GeCoNet-Tool: a software package for gene co-expression network construction and analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 281, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Luísa C. de Souza, Karolayne S. Azevedo, Jackson Gomes de Souza, Raquel de M. Barbosa, Marcelo A. C. Fernandes |
New proposal of viral genome representation applied in the classification of SARS-CoV-2 with deep learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 92, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Fotis Aisopos, Georgios Paliouras |
Comparing methods for drug-gene interaction prediction on the biomedical literature knowledge graph: performance versus explainability. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 272, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Khyber Shinwari, Yurong Wu, Hafiz Muzzammel Rehman, Ningkun Xiao, Mikhail A. Bolkov, Irina A. Tuzankina, Valery Chereshnev |
In-silico assessment of high-risk non-synonymous SNPs in ADAMTS3 gene associated with Hennekam syndrome and their impact on protein stability and function. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 251, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Orly Avraham, Tomer Tsaban, Ziv Ben-Aharon, Linoy Tsaban, Ora Schueler-Furman |
Protein language models can capture protein quaternary state. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 433, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Iakes Goenaga, Edgar Andrés, Koldo Gojenola, Aitziber Atutxa |
Advances in monolingual and crosslingual automatic disability annotation in Spanish. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 265, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Haixia Zhai, Hongli Hou, Junwei Luo, Xiaoyan Liu, Zhengjiang Wu, Junfeng Wang |
DGDTA: dynamic graph attention network for predicting drug-target binding affinity. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 367, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Troy M. LaPolice, Yi-Fei Huang |
An unsupervised deep learning framework for predicting human essential genes from population and functional genomic data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 347, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Timothy R. Fallon, Tereza Calounová, Martin Mokrejs, Jing-Ke Weng, Tomás Pluskal |
transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 133, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Runtian Gao, Junwei Luo, Hongyu Ding, Haixia Zhai |
INSnet: a method for detecting insertions based on deep learning network. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 80, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Changlong Gu, Xiaoying Li |
Prediction of disease-related miRNAs by voting with multiple classifiers. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 177, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Alexandre Renaux, Chloé Terwagne, Michael Cochez, Ilaria Tiddi, Ann Nowé, Tom Lenaerts |
A knowledge graph approach to predict and interpret disease-causing gene interactions. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 324, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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6 | Nand Sharma, Joshua Millstein |
CausNet: generational orderings based search for optimal Bayesian networks via dynamic programming with parent set constraints. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 46, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Joel Zirkle, Xiaomei Han, Rebecca Racz, Mohammadreza Samieegohar, Anik Chaturbedi, John Mann, Shilpa Chakravartula, Zhihua Li |
Deep learning-enabled natural language processing to identify directional pharmacokinetic drug-drug interactions. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 413, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Shourun Pan, Leiming Xia, Lei Xu, Zhen Li |
SubMDTA: drug target affinity prediction based on substructure extraction and multi-scale features. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 334, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Bruno Moretti, Santiago N. Rodriguez Alvarez, Hernán E. Grecco |
Nfinder: automatic inference of cell neighborhood in 2D and 3D using nuclear markers. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 230, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Jin Xu |
SBMLKinetics: a tool for annotation-independent classification of reaction kinetics for SBML models. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 248, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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6 | Yunbin Shi, Juntao Huang, Yi Hu, Yi Shen |
Multiomics data analyses to identify SLC25A17 as a novel biomarker to predict the prognosis and immune microenvironment in head and neck squamous cell carcinoma. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 269, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
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