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Results
Found 16824 publication records. Showing 16824 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Xuhua Yan, Ruiqing Zheng, Jinmiao Chen, Min Li 0007 |
scNCL: transferring labels from scRNA-seq to scATAC-seq data with neighborhood contrastive regularization.  |
Bioinform.  |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Pablo Millan Arias, Kathleen A. Hill, Lila Kari |
iDeLUCS: a deep learning interactive tool for alignment-free clustering of DNA sequences. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Hyukpyo Hong, Mark Jayson Cortez, Yu-Yu Cheng, Hang Joon Kim, Boseung Choi, Kresimir Josic, Jae Kyoung Kim |
Inferring delays in partially observed gene regulation processes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Adrien Rougny, Irina Balaur, Augustin Luna, Alexander Mazein |
StonPy: a tool to parse and query collections of SBGN maps in a graph database. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiang Cheng, Md Amanullah, Weigang Liu, Yi Liu, Xiaoqing Pan, Honghe Zhang, Haiming Xu, Pengyuan Liu 0003, Yan Lu |
WMDS.net: a network control framework for identifying key players in transcriptome programs. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Filippo Grazioli, Pierre Machart, Anja Mösch, Kai Li 0012, Leonardo V. Castorina, Nico Pfeifer, Martin Renqiang Min |
Attentive Variational Information Bottleneck for TCR-peptide interaction prediction. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhirui Liao, Lei Xie, Hiroshi Mamitsuka, Shanfeng Zhu |
Sc2Mol: a scaffold-based two-step molecule generator with variational autoencoder and transformer. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Dhaivat Joshi, Suhas N. Diggavi, Mark J. P. Chaisson, Sreeram Kannan |
HQAlign: aligning nanopore reads for SV detection using current-level modeling. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: SVJedi: genotyping structural variations with long reads. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Michael F. Adamer, Eljas Roellin, Lucie Bourguignon, Karsten M. Borgwardt |
SIMBSIG: similarity search and clustering for biobank-scale data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Shulei Wang |
Multiscale adaptive differential abundance analysis in microbial compositional data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xujun Liang, Ying Fu, Lingzhi Qu, Pengfei Zhang, Yongheng Chen |
Prediction of drug side effects with transductive matrix co-completion. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Rui Ren, Kuangnan Fang, Qingzhao Zhang, Shuangge Ma |
FunctanSNP: an R package for functional analysis of dense SNP data (with interactions). |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Vladimir Porokhin, Li-Ping Liu 0001, Soha Hassoun |
Using graph neural networks for site-of-metabolism prediction and its applications to ranking promiscuous enzymatic products. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Camille Marchet, Antoine Limasset |
Scalable sequence database search using partitioned aggregated Bloom comb trees. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Matteo Calgaro, Chiara Romualdi, Davide Risso, Nicola Vitulo |
benchdamic: benchmarking of differential abundance methods for microbiome data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Massimiliano Volpe, Jyotirmoy Das |
methylR: a graphical interface for comprehensive DNA methylation array data analysis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhongliang Zhou, Wayland Yeung, Nathan Gravel, Mariah Salcedo, Saber Soleymani, Sheng Li 0001, Natarajan Kannan |
Phosformer: an explainable transformer model for protein kinase-specific phosphorylation predictions. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Aman Agarwal, Li Chen |
DeepPHiC: predicting promoter-centered chromatin interactions using a novel deep learning approach. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin Kern, Sabrina Jaeger-Honz, Falk Schreiber, Björn Sommer 0001 |
APL@voro - interactive visualization and analysis of cell membrane simulations. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Rui P. Ribeiro, Alejandro Giorgetti |
pyGOMoDo: GPCRs modeling and docking with python. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Olli Sarala, Tanja Pyhäjärvi, Mikko J. Sillanpää |
BELMM: Bayesian model selection and random walk smoothing in time-series clustering. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Mihir Mongia, Romel Baral, Abhinav Adduri, Donghui Yan, Yudong Liu, Yuying Bian, Paul Kim, Bahar Behsaz, Hosein Mohimani |
AdenPredictor: accurate prediction of the adenylation domain specificity of nonribosomal peptide biosynthetic gene clusters in microbial genomes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xinran Wang, Zeyun Lu, Arjun Bhattacharya, Bogdan Pasaniuc, Nicholas Mancuso |
twas_sim, a Python-based tool for simulation and power analysis of transcriptome-wide association analysis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Frimpong Boadu, Hongyuan Cao, Jianlin Cheng |
Combining protein sequences and structures with transformers and equivariant graph neural networks to predict protein function. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yiming Li, Min Zeng, Fuhao Zhang, Fang-Xiang Wu, Min Li 0007 |
DeepCellEss: cell line-specific essential protein prediction with attention-based interpretable deep learning. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Emil Hägglund, Siv G. E. Andersson, Lionel Guy |
TADA: taxonomy-aware dataset aggregator. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Alfonso De Falco, Christophe M. Olinger, Barbara Klink, Michel Mittelbronn, Daniel Stieber |
Digital PCR cluster predictor: a universal R-package and shiny app for the automated analysis of multiplex digital PCR data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Lu Chen, Liang Yu, Lin Gao |
Potent antibiotic design via guided search from antibacterial activity evaluations. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Philip Hartout, Bojana Pocuca, Celia Méndez-García, Christian Schleberger |
Investigating the human and nonobese diabetic mouse MHC class II immunopeptidome using protein language modeling. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Marteinn T. Hardarson, Gunnar Palsson, Bjarni V. Halldórsson |
NCOurd: modelling length distributions of NCO events and gene conversion tracts. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Lingyu Li, Liangjie Sun, Guangyi Chen, Chi-Wing Wong, Wai-Ki Ching, Zhi-Ping Liu |
LogBTF: gene regulatory network inference using Boolean threshold network model from single-cell gene expression data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Samuele Garda, Leon Weber-Genzel, Robert Martin, Ulf Leser |
BELB: a biomedical entity linking benchmark. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Gang Wen, Limin Li |
FGCNSurv: dually fused graph convolutional network for multi-omics survival prediction. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Kevin Volkel, Kevin N. Lin, Paul W. Hook, Winston Timp, Albert J. Keung, James M. Tuck |
FrameD: framework for DNA-based data storage design, verification, and validation. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Bowen Yang, Minal Khatri, Jinfang Zheng, Jitender S. Deogun, Yanbin Yin |
Genome mining for anti-CRISPR operons using machine learning. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ieva Kerseviciute, Juozas Gordevicius |
aPEAR: an R package for autonomous visualization of pathway enrichment networks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Md. Mahfuzur Rahaman, Nabila Shahnaz Khan, Shaojie Zhang |
RNAMotifComp: a comprehensive method to analyze and identify structurally similar RNA motif families. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Dani Korpela, Emmi Jokinen, Alexandru Dumitrescu, Jani Huuhtanen, Satu Mustjoki, Harri Lähdesmäki |
EPIC-TRACE: predicting TCR binding to unseen epitopes using attention and contextualized embeddings. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xingqi Wu, Yi Shi, Minghui Wang, Ao Li 0001 |
CAMR: cross-aligned multimodal representation learning for cancer survival prediction. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Gözde Yazici, Burcu Kurt Vatandaslar, Ilknur Aydin Canturk, Fatmagul I Aydinli, Ozge Arici Duz, Emre Karakoç, Bilal Ersen Kerman, Can Alkan |
Identification of protein-protein interaction bridges for multiple sclerosis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ege Ülgen, Ozan Ozisik, Osman Ugur Sezerman |
PANACEA: network-based methods for pharmacotherapy prioritization in personalized oncology. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yanglan Gan, Xingyu Huang, Wenjing Guo, Cairong Yan, Guobing Zou |
Predicting synergistic anticancer drug combination based on low-rank global attention mechanism and bilinear predictor. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Michail Chatzianastasis, Michalis Vazirgiannis, Zijun Zhang |
Explainable Multilayer Graph Neural Network for cancer gene prediction. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Steven Grudman, J. Eduardo Fajardo, András Fiser |
Optimal selection of suitable templates in protein interface prediction. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Gherard Batisti Biffignandi, Greta Bellinzona, Greta Petazzoni, Davide Sassera, Gianvincenzo Zuccotti, Claudio Bandi, Fausto Baldanti, Francesco Comandatore, Stefano Gaiarsa |
P-DOR, an easy-to-use pipeline to reconstruct bacterial outbreaks using genomics. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xinmeng Liao, Mehmet Ozcan, Mengnan Shi, Woonghee Kim, Han Jin, Xiangyu Li, Hasan Turkez, Adnane Achour, Mathias Uhlén, Adil Mardinoglu, Cheng Zhang 0002 |
Open MoA: revealing the mechanism of action (MoA) based on network topology and hierarchy. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yunpei Xu, Hong-Dong Li, Cui-Xiang Lin, Ruiqing Zheng, Yaohang Li, Jinhui Xu, Jianxin Wang 0001 |
CellBRF: a feature selection method for single-cell clustering using cell balance and random forest. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Chenyang Dong, Siqi Shen, Sündüz Keles |
AdaLiftOver: high-resolution identification of orthologous regulatory elements with Adaptive liftOver. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Fabricio Almeida-Silva, Tao Zhao, Kristian K. Ullrich, M. Eric Schranz, Yves Van de Peer |
syntenet: an R/Bioconductor package for the inference and analysis of synteny networks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ziyun Guang, Matthew Smith-Erb, Layla Oesper |
A weighted distance-based approach for deriving consensus tumor evolutionary trees. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Musu Yuan, Liang Chen, Minghua Deng |
Clustering single-cell multi-omics data with MoClust. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Seong-Joon Park, Sunghwan Kim, Jaeho Jeong, Albert No, Jong-Seon No, Hosung Park |
Reducing cost in DNA-based data storage by sequence analysis-aided soft information decoding of variable-length reads. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Mihir Bafna, Hechen Li, Xiuwei Zhang |
CLARIFY: cell-cell interaction and gene regulatory network refinement from spatially resolved transcriptomics. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: BIODICA: a computational environment for Independent Component Analysis of omics data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Bede Constantinides, Martin Hunt, Derrick W. Crook |
Hostile: accurate decontamination of microbial host sequences. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Wei Chen 0088, Zhiwei Li, Hongyi Fang, Qianyuan Yao, Cheng Zhong, Jianye Hao, Qi Zhang 0001, Xuanjing Huang 0001, Jiajie Peng, Zhongyu Wei |
A benchmark for automatic medical consultation system: frameworks, tasks and datasets. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Chen Wang, Harikumar Govindarajan, Panagiotis Katsonis, Olivier Lichtarge |
ShinyBioHEAT: an interactive shiny app to identify phenotype driver genes in E.coli and B.subtilis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | André L. S. Meirelles, Tahsin M. Kurç, Jun Kong, Renato Ferreira, Joel H. Saltz, George Teodoro |
Effective and efficient active learning for deep learning-based tissue image analysis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xabier Rey-Barreiro, Alejandro F. Villaverde |
Benchmarking tools for a priori identifiability analysis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Giovanni Madeo, Castrense Savojardo, Matteo Manfredi, Pier Luigi Martelli, Rita Casadio |
CoCoNat: a novel method based on deep learning for coiled-coil prediction. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Zeeshan Abbas, Mobeen Ur Rehman, Hilal Tayara, Kil To Chong 0001 |
ORI-Explorer: a unified cell-specific tool for origin of replication sites prediction by feature fusion. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Lulu Yan, Xiaoqiang Sun |
Benchmarking and integration of methods for deconvoluting spatial transcriptomic data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jinding Liu, Yaru Zhang, Yapin Shi, Yiqing Zheng, Yali Zhu, Zhuoran Guan, Danyu Shen, Daolong Dou |
FungiExp: a user-friendly database and analysis platform for exploring fungal gene expression and alternative splicing. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Luiz Felipe Piochi, António J. Preto, Irina S. Moreira |
DELFOS - drug efficacy leveraging forked and specialized networks - benchmarking scRNA-seq data in multi-omics-based prediction of cancer sensitivity. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ziang Zhang, Lei Sun |
The hidden factor: accounting for covariate effects in power and sample size computation for a binary trait. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Christiana N. Fogg, Diane E. Kovats, Martin Vingron |
2023 ISCB innovator award: Dana Pe'er. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Mohammad Nuwaisir Rahman, Abdullah Al Noman, Abir Mohammad Turza, Mohammed Abid Abrar, Md. Abul Hassan Samee, M. Saifur Rahman |
ScribbleDom: using scribble-annotated histology images to identify domains in spatial transcriptomics data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: wpLogicNet: logic gate and structure inference in gene regulatory networks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Andrew Dickson, Ehsaneddin Asgari, Alice C. McHardy, Mohammad R. K. Mofrad |
GO Bench: shared hub for universal benchmarking of machine learning-based protein functional annotations. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Enio Gjerga, Isabel S. Naarmann-de Vries, Christoph Dieterich |
Characterizing alternative splicing effects on protein interaction networks with LINDA. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Diksha Bhalla, Marvin N. Steijaert, Eefje S. Poppelaars, Marc Teunis, Monique van der Voet, Marie Corradi, Elisabeth Dévière, Luke Noothout, Wilco Tomassen, Martijn Rooseboom, Richard A. Currie, Cyrille Krul, Raymond H. H. Pieters, Vera van Noort, Marjolein Wildwater |
DARTpaths, an in silico platform to investigate molecular mechanisms of compounds. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Edin Salkovic, Mohammad Amin Sadeghi, Abdelkader Baggag, Ahmed Gamal Rashed Salem, Halima Bensmail |
OutSingle: a novel method of detecting and injecting outliers in RNA-Seq count data using the optimal hard threshold for singular values. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Dong Pei, Rachel Griffard, Nanda Kumar Yellapu, Emily Nissen, Devin C. Koestler |
optima: an open-source R package for the Tapestri platform for integrative single cell multiomics data analysis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Eszter Csibra, Guy-Bart Stan |
Parsley: a web app for parsing data from plate readers. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Qizhi Li, Xubin Zheng, Jize Xie, Ran Wang, Mengyao Li, Man Hon Wong 0001, Kwong-Sak Leung, Shuai Li 0010, Qingshan Geng, Lixin Cheng |
bvnGPS: a generalizable diagnostic model for acute bacterial and viral infection using integrative host transcriptomics and pretrained neural networks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: Optimal adjustment sets for causal query estimation in partially observed biomolecular networks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Richard A Schäfer, Qingxiang Guo, Rendong Yang |
ScanNeo2: a comprehensive workflow for neoantigen detection and immunogenicity prediction from diverse genomic and transcriptomic alterations. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Licai Huang, James P. Long, Ehsan Irajizad, James D. Doecke, Kim-Anh Do, Min Jin Ha |
A unified mediation analysis framework for integrative cancer proteogenomics with clinical outcomes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jonas C. Ditz, Jacqueline Wistuba-Hamprecht, Timo Maier, Rolf Fendel, Nico Pfeifer, Bernhard Reuter |
PlasmoFAB: a benchmark to foster machine learning for Plasmodium falciparum protein antigen candidate prediction. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Marie Mille, Julie Ripoll, Bastien Cazaux, Eric Rivals |
dipwmsearch: a Python package for searching di-PWM motifs. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Michele Fontanesi, Alessio Micheli, Paolo Milazzo, Marco Podda |
Exploiting the structure of biochemical pathways to investigate dynamical properties with neural networks for graphs. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jinjuan Wang, Mingya Long, Qizhai Li |
A maximum kernel-based association test to detect the pleiotropic genetic effects on multiple phenotypes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Gandhar Mahadeshwar, Rafael de Cesaris Araujo Tavares, Han Wan, Zion R. Perry, Anna Marie Pyle |
RSCanner: rapid assessment and visualization of RNA structure content. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Laura D. T. Vo Ngoc, Randy Osei, Katrin Dohr, Catharina Olsen, Sara Seneca, Alexander Gheldof |
EDIR: exome database of interspersed repeats. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Chenxi Zhou, Shane A. McCarthy, Richard Durbin |
YaHS: yet another Hi-C scaffolding tool. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Cheng Zhong, Tian Tian, Zhi Wei 0001 |
Hidden Markov random field models for cell-type assignment of spatially resolved transcriptomics. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Chen Li, Ting-Fung Chan, Can Yang 0002, Zhixiang Lin |
stVAE deconvolves cell-type composition in large-scale cellular resolution spatial transcriptomics. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Bayo Lau, Prashant S. Emani, Jackson Chapman, Lijing Yao, Tarsus Lam, Paul Merrill, Jonathan Warrell, Mark B. Gerstein, Hugo Y. K. Lam |
Insights from incorporating quantum computing into drug design workflows. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Qunzhuo Wu, Zhaohong Deng, Wei Zhang, Xiaoyong Pan, Kup-Sze Choi, Yun Zuo, Hong-Bin Shen, Dong-Jun Yu |
MLNGCF: circRNA-disease associations prediction with multilayer attention neural graph-based collaborative filtering. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Sandra Díaz-Seoane, Xabier Rey-Barreiro, Alejandro F. Villaverde |
STRIKE-GOLDD 4.0: user-friendly, efficient analysis of structural identifiability and observability. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Niklas Philipp, Cedric K. Brinkmann, Jens Georg, Daniel Schindler, Bork A Berghoff |
DIGGER-Bac: prediction of seed regions for high-fidelity construction of synthetic small RNAs in bacteria. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Iván Martín Hernández, Yves Dehouck, Ugo Bastolla, José Ramón López-Blanco, Pablo Chacón |
Predicting protein stability changes upon mutation using a simple orientational potential. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Nhan Ly-Trong, Giuseppe M. J. Barca, Bui Quang Minh |
AliSim-HPC: parallel sequence simulator for phylogenetics. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Neda Shokraneh, Mariam Arab, Maxwell W. Libbrecht |
Integrative chromatin domain annotation through graph embedding of Hi-C data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Feifei Wang, Dongzuo Liang, Yang Li, Shuangge Ma |
Prior information-assisted integrative analysis of multiple datasets. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Sean Upchurch, Emilio Palumbo, Jeremy Adams, David Bujold, Guillaume Bourque, Jared Nedzel, Keenan Graham, Meenakshi S. Kagda, Pedro Assis, Benjamin Hitz, Emilio Righi, Roderic Guigó, Barbara J. Wold, Alvis Brazma, Julia Burchard, Joe Capka, Michael Cherry, Laura Clarke, Brian Craft, Manolis Dermitzakis, Mark Diekhans, John Dursi, Michael Sean Fitzsimons, Zac Flaming, Romina Garrido, Alfred Gil, Paul Godden, Matt Green, Mitch Guttman, Brian Haas, Max Haeussler, Bo Li, Sten Linnarsson, Adam Lipski, David Liu, Simonne Longerich, David Lougheed, Jonathan Manning, John C. Marioni, Christopher Meyer, Stephen B. Montgomery, Alyssa Morrow, Alfonso Muñoz-Pomer Fuentes, Jared L. Nedzel, David Nguyen, Kevin Osborn, Francis Ouellette, Irene Papatheodorou, Dmitri D. Pervouchine, Arun K. Ramani, Jordi Rambla, Bashir Sadjad, David Steinberg, Jeremiah Talkar, Timothy Tickle, Kathy Tzeng, Saman Vaisipour, Sean Watford, Barbara Wold, Zhenyu Zhang, Jing Zhu |
RNAget: an API to securely retrieve RNA quantifications. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Grant Greenberg, Aditya Narayan Ravi, Ilan Shomorony |
LexicHash: sequence similarity estimation via lexicographic comparison of hashes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Eric Lee, Kevin Chern, Michael Nissen, Xuehai Wang, Chris Huang, Anita K. Gandhi, Alexandre Bouchard-Côté, Andrew P. Weng, Andrew Roth |
SpatialSort: a Bayesian model for clustering and cell population annotation of spatial proteomics data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Daffodil M. Canson, Aimee L. Davidson, Miguel de la Hoya, Michael T. Parsons, Dylan M. Glubb, Olga Kondrashova, Amanda B. Spurdle |
SpliceAI-10k calculator for the prediction of pseudoexonization, intron retention, and exon deletion. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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