Search results for "RECOMB"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Andrew Fire	RNAi, genome ultrastructure, and other unexpected tales from the analysis of genetic silencing.	RECOMB	2004	DBLP DOI BibTeX RDF
1	Yanni Sun, Jeremy Buhler	Designing multiple simultaneous seeds for DNA similarity search.	RECOMB	2004	DBLP DOI BibTeX RDF	Mandala, biosequence comparison, genomic DNA, seed design, similarity search
1	Haifeng Li 0012, Tao Jiang 0001	A class of edit kernels for SVMs to predict translation initiation sites in eukaryotic mRNAs.	RECOMB	2004	DBLP DOI BibTeX RDF	mRNA, positive definite kernel, machine learning, support vector machine, edit distance, translation initiation site
1	Leonid Meyerguz, David Kempe 0001, Jon M. Kleinberg, Ron Elber	The evolutionary capacity of protein structures.	RECOMB	2004	DBLP DOI BibTeX RDF	evolutionary networks, rapidly mixing Markov chains, protein structure, approximate counting
1	Sabrina Ledent, Stéphane Robin	Checking homogeneity of motifs' distribution in heterogenous sequences.	RECOMB	2004	DBLP DOI BibTeX RDF	compound poisson model, scan statistics, statistics of motifs, heterogeneity
1	Martin Nowak	Somatic evolution of cancer.	RECOMB	2004	DBLP DOI BibTeX RDF
1	Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad	Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution.	RECOMB	2004	DBLP DOI BibTeX RDF	gene tree, orthology, algorithms, bayesian analysis, reconciliation
1	Pavel A. Pevzner, Haixu Tang, Glenn Tesler	De novo repeat classification and fragment assembly.	RECOMB	2004	DBLP DOI BibTeX RDF	repeat analysis, sequence assembly, multiple alignment
1	Xin He, Michael H. Goldwasser	Identifying conserved gene clusters in the presence of orthologous groups.	RECOMB	2004	DBLP DOI BibTeX RDF	clusters of orthologous genes, conserved gene clusters, gene teams, bioinformatics, comparative genomics
1	David A. Lee, Alastair Grant, Ian Sillitoe, Mark Dibley, Juan Garcia Ranea, Christine A. Orengo	A structural perspective on genome evolution.	RECOMB	2004	DBLP DOI BibTeX RDF
1	Adam C. Siepel, David Haussler	Computational identification of evolutionarily conserved exons.	RECOMB	2004	DBLP DOI BibTeX RDF	phylogenetic hidden markov model, gene prediction
1	Martin Farach-Colton, Yang Huang, John L. L. Woolford	Discovering temporal relations in molecular pathways using protein-protein interactions.	RECOMB	2004	DBLP DOI BibTeX RDF	molecular pathways, probe interval graphs, ribosomal assembly pathway, vertex ordering, interval graphs, protein-protein interaction
1	Zasha Weinberg, Walter L. Ruzzo	Faster genome annotation of non-coding RNA families without loss of accuracy.	RECOMB	2004	DBLP DOI BibTeX RDF	covariance models, gene families, genome annotation, histone downstream element, hyperthermophile archaea snoRNA, iron response element, rigorous filter, profile hidden Markov models, non-coding RNA
1	Roded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp	Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data.	RECOMB	2004	DBLP DOI BibTeX RDF	heavy subgraph, protein complex, probabilistic model, conservation, comparative analysis, protein interaction network, yeast, bacteria
1	Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jack Snoeyink, Jan F. Prins, Alexander Tropsha	Mining protein family specific residue packing patterns from protein structure graphs.	RECOMB	2004	DBLP DOI BibTeX RDF	almost-delaunay, subgraph mining, protein classification
1	Elizabeth A. Winzeler, Karine G. Le Roch, Yingyao Zhou, Peter L. Blair, Muni Grainger, J. Kathleen Moch, J. David Haynes, Patricia De la Vega, Anthony A. Holder, Serge Batalov, Daniel J. Carucci	Systems biology and malaria.	RECOMB	2004	DBLP DOI BibTeX RDF
1	Zhijin Wu, Rafael A. Irizarry	Stochastic models inspired by hybridization theory for short oligonucleotide arrays.	RECOMB	2004	DBLP DOI BibTeX RDF	affymetrix probe-level data, background adjustment, stochastic models, microarrays, physical models
1	Pawel Górecki 0001	Reconciliation problems for duplication, loss and horizontal gene transfer.	RECOMB	2004	DBLP DOI BibTeX RDF	duplication-loss model, NP-completeness, reconciliation, horizontal gene transfer
1	Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer	Learning multiple evolutionary pathways from cross-sectional data.	RECOMB	2004	DBLP DOI BibTeX RDF	HIV drug resistance, mutational pathways, bayesian networks, EM algorithm, mixture models, tree models
1	Hanchuan Peng, Eugene W. Myers	Comparing in situ mRNA expression patterns of drosophila embryos.	RECOMB	2004	DBLP DOI BibTeX RDF	drosophila, embryogenesis, in situ hybridization, image matching, gaussian mixture model, gene expression
1	Eran Segal, Roded Sharan	A discriminative model for identifying spatial cis-regulatory modules.	RECOMB	2004	DBLP DOI BibTeX RDF	cis-regulatory module, probabilistic model, transcriptional regulation
1	Yih-En Andrew Ban, Herbert Edelsbrunner, Johannes Rudolph	Interface surfaces for protein-protein complexes.	RECOMB	2004	DBLP DOI BibTeX RDF	geometric and topological algorithms, interface surfaces, voronoi diagrams, filtrations, protein interaction
1	Eleazar Eskin	From profiles to patterns and back again: a branch and bound algorithm for finding near optimal motif profiles.	RECOMB	2004	DBLP DOI BibTeX RDF	patterns, profiles, transcription factor binding sites, motif-finding
1	Eran Halperin, Richard M. Karp	Perfect phylogeny and haplotype assignment.	RECOMB	2004	DBLP DOI BibTeX RDF	entropy, haplotypes, phasing, perfect phylogeny
1	David Sankoff, Phil Trinh	Chromosomal breakpoint re-use in the inference of genome sequence rearrangement.	RECOMB	2004	DBLP DOI BibTeX RDF	Hannenhalli-Pevzner algorithm, synteny blocks, evolution, inversion, comparative genomics, breakpoints, rearrangements
1	Deborah A. Nickerson	SNPing in the human genome.	RECOMB	2004	DBLP DOI BibTeX RDF
1	Ydo Wexler, Zohar Yakhini, Yechezkel Kashi, Dan Geiger	Finding approximate tandem repeats in genomic sequences.	RECOMB	2004	DBLP DOI BibTeX RDF	DNA repeats, DNA satellites, teiresias, trf, pattern discovery, tandem repeats
1	Alberto Policriti, Nicola Vitacolonna, Michele Morgante, Andrea Zuccolo	Structured motifs search.	RECOMB	2004	DBLP DOI BibTeX RDF	graph data structures, interval constraints, structured motifs
1	Alexis J. Battle, Eran Segal, Daphne Koller	Probabilistic discovery of overlapping cellular processes and their regulation.	RECOMB	2004	DBLP DOI BibTeX RDF	cellular processes, gene regulation, probabilistic relational models
1	Michael T. Hallett, Jens Lagergren, Ali Tofigh	Simultaneous identification of duplications and lateral transfers.	RECOMB	2004	DBLP DOI BibTeX RDF	gene loss, lateral gene transfer, gene duplication
1	Xiaoyue Zhao, Haiyan Huang, Terence P. Speed	Finding short DNA motifs using permuted markov models.	RECOMB	2004	DBLP DOI BibTeX RDF	Jeffreys mixture, maximal dependence decomposition, permuted variable length Markov models, weight matrix models, model selection, transcription factor binding sites, splice sites
1	Jing Li 0002, Tao Jiang 0001	An exact solution for finding minimum recombinant haplotype configurations on pedigrees with missing data by integer linear programming.	RECOMB	2004	DBLP DOI BibTeX RDF	missing data imputation, pedigree analysis, integer linear programming, branch-and-bound algorithm, recombination, haplotyping
1	Xinyu Tang, Bonnie Kirkpatrick, Shawna L. Thomas, Guang Song, Nancy M. Amato	Using motion planning to study RNA folding kinetics.	RECOMB	2004	DBLP DOI BibTeX RDF	folding kinetics, motion planning, RNA
1	Ross Lippert, Xiaoyue Zhao, Liliana Florea, Clark M. Mobarry, Sorin Istrail	Finding anchors for genomic sequence comparison.	RECOMB	2004	DBLP DOI BibTeX RDF	MUMs, whole-genome alignments, suffix trees
1	Chris Bailey-Kellogg, Sheetal Chainraj, Gopal Pandurangan	A random graph approach to NMR sequential assignment.	RECOMB	2004	DBLP DOI BibTeX RDF	automated sequential resonance assignment, chemical shift degeneracy, nuclear magnetic resonance (NMR) spectroscopy, protein structure determination, randomized algorithm, probabilistic analysis, hamiltonian path, random graph model
1	Richard M. Karp	Algorithms for inferring cis-regulatory structures and protein interaction networks.	RECOMB	2004	DBLP DOI BibTeX RDF
1	John D. Kececioglu, Dean Starrett	Aligning alignments exactly.	RECOMB	2004	DBLP DOI BibTeX RDF	linear gap costs, sum of pairs, exact algorithms, multiple sequence alignment
1	Luay Nakhleh, Tandy J. Warnow, C. Randal Linder	Reconstructing reticulate evolution in species: theory and practice.	RECOMB	2004	DBLP DOI BibTeX RDF	gene trees, subtree prune and regraft, phylogenetic networks
1	Francis Y. L. Chin, Henry C. M. Leung, Siu-Ming Yiu, Tak Wah Lam, Roni Rosenfeld, Wai Wan Tsang, David K. Smith 0001, Y. Jiang	Finding motifs for insufficient number of sequences with strong binding to transcription facto.	RECOMB	2004	DBLP DOI BibTeX RDF	binding energy, DNA microarray, transcription factor, motif finding
1	Gad Kimmel, Ron Shamir	Maximum likelihood resolution of multi-block genotypes.	RECOMB	2004	DBLP DOI BibTeX RDF	disease association, genotype phasing, haplotype resolution, algorithm, maximum likelihood, SNP, haplotype, haplotyping, genotype, haplotype block
1	Matthew Menke, Eben Scanlon, Jonathan King, Bonnie Berger, Lenore Cowen	Wrap-and-pack: a new paradigm for beta structural motif recognition with application to recognizing beta trefoils.	RECOMB	2004	DBLP DOI BibTeX RDF	beta structures, beta trefoils, motif recognition, rotamer libraries, threading, protein structure prediction
1	Russell F. Doolittle	Fifty years of sequence analysis: what have we learned?	RECOMB	2004	DBLP DOI BibTeX RDF
1	Sourav Chatterji, Lior Pachter	Multiple organism gene finding by collapsed gibbs sampling.	RECOMB	2004	DBLP DOI BibTeX RDF	hidden markov model, gibbs sampling, gene finding
1	Manolis Kamvysselis, Nick Patterson, Bruce Birren, Bonnie Berger, Eric S. Lander	Whole-genome comparative annotation and regulatory motif discovery in multiple yeast species.	RECOMB	2003	DBLP DOI BibTeX RDF	genome annotation, regulatory motif discovery, computational biology, comparative genomics
1	Umar Syed, Golan Yona	Using a mixture of probabilistic decision trees for direct prediction of protein function.	RECOMB	2003	DBLP DOI BibTeX RDF	functional prediction, sequence-function relationships, decision trees
1	Kui Zhang, Fengzhu Sun, Michael S. Waterman, Ting Chen 0006	Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data.	RECOMB	2003	DBLP DOI BibTeX RDF	local maximal haplotypes, tag SNPs, clustering, dynamic programming, haplotype block
1	Tatsuya Akutsu	Efficient extraction of mapping rules of atoms from enzymatic reaction data.	RECOMB	2003	DBLP DOI BibTeX RDF	common subgraph, graph isomorphism, metabolic pathways, chemical reaction
1	Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky	Engineering a scalable placement heuristic for DNA probe arrays.	RECOMB	2003	DBLP DOI BibTeX RDF	DNA arrays, border minimization, probe placement
1	Benny Chor, Amit Khetan, Sagi Snir	Maximum likelihood on four taxa phylogenetic trees: analytic solutions.	RECOMB	2003	DBLP DOI BibTeX RDF	2-state model, Hadamard conjugation, molecular clock, symbolic algebra, constrained optimization, maximum likelihood, phylogenetic trees, saturation, Groebner bases
1	Amir Ben-Dor, Tzvika Hartman, Benno Schwikowski, Roded Sharan, Zohar Yakhini	Towards optimally multiplexed applications of universal DNA tag systems.	RECOMB	2003	DBLP DOI BibTeX RDF	SNP genotyping, cross-hybridization, minimum primer cover, universal array, stochastic model
1	Chen-Hsiang Yeang, Tommi S. Jaakkola	Physical network models and multi-source data integration.	RECOMB	2003	DBLP DOI BibTeX RDF	data fusion, physical models, regulatory networks
1	Terence P. Speed	Low-level analyses of microarray data.	RECOMB	2003	DBLP DOI BibTeX RDF
1	Neal Lesh, Michael Mitzenmacher, Sue Whitesides	A complete and effective move set for simplified protein folding.	RECOMB	2003	DBLP DOI BibTeX RDF	local moves, tabu search, protein folding
1	Jeremy Buhler, Uri Keich, Yanni Sun	Designing seeds for similarity search in genomic DNA.	RECOMB	2003	DBLP DOI BibTeX RDF	Mandala, biosequence comparison, genomic DNA, seed design, similarity search
1	Yoseph Barash, Gal Elidan, Nir Friedman, Tommy Kaplan	Modeling dependencies in protein-DNA binding sites.	RECOMB	2003	DBLP DOI BibTeX RDF	common subgraph, graph isomorphism, metabolic pathways, chemical reaction
1	Vineet Bafna, Nathan Edwards	On de novo interpretation of tandem mass spectra for peptide identification.	RECOMB	2003	DBLP DOI BibTeX RDF	de novo interpretation, tandem mass spectrometry, proteomics
1	Vineet Bafna, Bjarni V. Halldórsson, Russell Schwartz, Andrew G. Clark, Sorin Istrail	Haplotypes and informative SNP selection algorithms: don't block out information.	RECOMB	2003	DBLP DOI BibTeX RDF	haplotype tagging, SNPs, haplotype blocks
1	Kári Stefánsson	Invited.	RECOMB	2003	DBLP DOI BibTeX RDF
1	Lei M. Li, Jong Hyun Kim, Michael S. Waterman	Haplotype reconstruction from SNP alignment.	RECOMB	2003	DBLP DOI BibTeX RDF	shotgun sequencing, alignment, confidence, SNP, haplotype, genotype
1	Dieter Oesterhelt	Biology and bioinformatics of halophilism.	RECOMB	2003	DBLP DOI BibTeX RDF
1	David Haussler	Computational analysis of the human and other mammalian genomes.	RECOMB	2003	DBLP DOI BibTeX RDF
1	Andrew G. Clark	Haplotype phase inference.	RECOMB	2003	DBLP DOI BibTeX RDF
1	Amos Tanay, Ron Shamir	Modeling transcription programs: inferring binding site activity and dose-response model optimization.	RECOMB	2003	DBLP DOI BibTeX RDF
1	Christiane Nüsslein-Volhard	Invited.	RECOMB	2003	DBLP DOI BibTeX RDF
1	Fabian Schwarzer, Itay Lotan	Approximation of protein structure for fast similarity measures.	RECOMB	2003	DBLP DOI BibTeX RDF	approximation of structure, similarity measures, nearest-neighbor search, protein structure
1	Jing Li 0002, Tao Jiang 0001	Efficient rule-based haplotyping algorithms for pedigree data.	RECOMB	2003	DBLP DOI BibTeX RDF	Gaussian elimination over Z2, pedigree analysis, algorithm, time complexity, SNP, recombination, haplotyping
1	Itsik Pe'er, Jacques S. Beckmann	Resolution of haplotypes and haplotype frequencies from SNP genotypes of pooled samples.	RECOMB	2003	DBLP DOI BibTeX RDF	SNP genotypes, clustering, lattices, Haplotype, pooling
1	Niranjan Nagarajan, Golan Yona	A multi-expert system for the automatic detection of protein domains from sequence information.	RECOMB	2003	DBLP DOI BibTeX RDF	domain boundaries, domain prediction, protein domains, SCOP
1	Martin Vingron, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman, Webb Miller (eds.)	Proceedings of the Sventh Annual International Conference on Computational Biology, RECOMB 2003, Berlin, Germany, April 10-13, 2003	RECOMB	2003	DBLP DOI BibTeX RDF
1	Balaji Krishnapuram, Lawrence Carin, Alexander J. Hartemink	Joint classifier and feature optimization for cancer diagnosis using gene expression data.	RECOMB	2003	DBLP DOI BibTeX RDF	JCFO, RVM, classication, disease diagnosis, joint optimization, sparse bayesian methods, SVM, feature selection
1	Wentian Li, Ivo Grosse	Gene selection criterion for discriminant microarray data analysis based on extreme value distributions.	RECOMB	2003	DBLP DOI BibTeX RDF	classification, microarray, logistic regression, extreme values
1	Aristides Gionis, Heikki Mannila	Finding recurrent sources in sequences.	RECOMB	2003	DBLP DOI BibTeX RDF
1	Gill Bejerano	Efficient exact value computation and applications to biosequence analysis.	RECOMB	2003	DBLP DOI BibTeX RDF	p-value, exact test, frequency tables, real extension, branch and bound, categorical data
1	Krishna M. Roskin, Mark Diekhans, David Haussler	Scoring two-species local alignments to try to statistically separate neutrally evolving from selected DNA segments.	RECOMB	2003	DBLP DOI BibTeX RDF	CpG effect, ancestral repeat, context-dependent base substitutions, dinucleotide dependence, fraction of human genome under selection, mouse-human alignments, neutral evolution, mutual information, comparative genomics, evolutionary models
1	Maáyan Fishelson, Dan Geiger	Optimizing exact genetic linkage computations.	RECOMB	2003	DBLP DOI BibTeX RDF	DAG models, genetic linkage analysis, superlink, bayesian networks, combinatorial optimization, greedy algorithms, probabilistic algorithms, treewidth
1	Derek Y. Chiang, Alan M. Moses, Manolis Kamvysselis, Eric S. Lander, Michael B. Eisen	Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts.	RECOMB	2003	DBLP DOI BibTeX RDF	multifactorial regulation, phylogenetic footprinting, promoter structure, comparative genomics, transcription regulation
1	Minghua Deng, Ting Chen 0006, Fengzhu Sun	An integrated probabilistic model for functional prediction of proteins.	RECOMB	2003	DBLP DOI BibTeX RDF	function prediction, pfam domain, Markov random field, protein-protein interaction, Gibbs sampler
1	Eleazar Eskin, Eran Halperin, Richard M. Karp	Large scale reconstruction of haplotypes from genotype data.	RECOMB	2003	DBLP DOI BibTeX RDF	haplotype resolution, single nucleotide polymorphisms (SNPs), perfect phylogeny
1	Christopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald	Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments.	RECOMB	2003	DBLP DOI BibTeX RDF
1	Gene W. Yeo, Christopher B. Burge	Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals.	RECOMB	2003	DBLP DOI BibTeX RDF	maximal dependence decomposition, molecular sequence analysis, non-neighboring dependencies, regulatory elements, Markov models, maximum entropy, splice sites
1	Áprád Furka	Combinatorial synthesis on macroscopic solid support units.	RECOMB	2003	DBLP DOI BibTeX RDF
1	Gideon Greenspan, Dan Geiger	Model-based inference of haplotype block variation.	RECOMB	2003	DBLP DOI BibTeX RDF	haplotype resolution, linkage disequilibrium mapping, recombination hotspot, Bayesian Network, haplotype, haplotype block
1	Mathieu Blanchette	A comparative analysis method for detecting binding sites in coding regions.	RECOMB	2003	DBLP DOI BibTeX RDF
1	Adam C. Siepel, David Haussler	Combining phylogenetic and hidden Markov models in biosequence analysis.	RECOMB	2003	DBLP DOI BibTeX RDF	context-sensitive substitution, maximum likelihood
1	Pavel A. Pevzner, Glenn Tesler	Transforming men into mice: the Nadeau-Taylor chromosomal breakage model revisited.	RECOMB	2003	DBLP DOI BibTeX RDF	breakpoint re-use, evolution, genome rearrangements
1	Arthur M. Lesk	Invited: Prediction of protein function.	RECOMB	2003	DBLP DOI BibTeX RDF
1	Edward N. Trifonov	Poetry and prose of the sequences.	RECOMB	2003	DBLP DOI BibTeX RDF
1	Andreas Heger, Michael Lappe, Liisa Holm	Accurate detection of very sparse sequence motifs.	RECOMB	2003	DBLP DOI BibTeX RDF	protein evolution, algorithm, consistency, sequence alignment
1	Samuel A. Heath, Franco P. Preparata, Joel Young	Sequencing by hybridization using direct and reverse cooperating spectra.	RECOMB	2002	DBLP DOI BibTeX RDF
1	Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer	Microarrays: how many do you need?	RECOMB	2002	DBLP DOI BibTeX RDF
1	Alberto Apostolico, Mary Ellen Bock, Stefano Lonardi	Monotony of surprise and large-scale quest for unusual words.	RECOMB	2002	DBLP DOI BibTeX RDF
1	Ron O. Dror, Jonathan G. Murnick, Nicola A. Rinaldi, Voichita D. Marinescu, Ryan M. Rifkin, Richard A. Young	A bayesian approach to transcript estimation from gene array data: the BEAM technique.	RECOMB	2002	DBLP DOI BibTeX RDF	affymetrix chips, statistical confidence, bayesian estimation, DNA microarrays
1	Eran Halperin, Shay Halperin, Tzvika Hartman, Ron Shamir	Handling long targets and errors in sequencing by hybridization.	RECOMB	2002	DBLP DOI BibTeX RDF
1	Dannie Durand, David Sankoff	Tests for gene clustering.	RECOMB	2002	DBLP DOI BibTeX RDF
1	Peter F. Arndt, Christopher B. Burge, Terence Hwa	DNA sequence evolution with neighbor-dependent mutation.	RECOMB	2002	DBLP DOI BibTeX RDF	CpG-methylation-deamination, DNA sequence evolution, single-and dinucleotide frequencies
1	Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Ron Shamir	The restriction scaffold problem.	RECOMB	2002	DBLP DOI BibTeX RDF
1	Christopher James Langmead, Anthony K. Yan, C. Robertson McClung, Bruce Randall Donald	Phase-independent rhythmic analysis of genome-wide expression patterns.	RECOMB	2002	DBLP DOI BibTeX RDF
1	Evan E. Eichler	Recent duplication, evolution and assembly of the human genome.	RECOMB	2002	DBLP DOI BibTeX RDF
1	Ali H. Brivanlou	Microarray analysis of vertebrate embryonic neural induction.	RECOMB	2002	DBLP DOI BibTeX RDF
1	Jia Li 0001, Webb Miller	Significance Of inter-species matches when evolutionary rate varies.	RECOMB	2002	DBLP DOI BibTeX RDF

Publications at "RECOMB"( http://dblp.L3S.de/Venues/RECOMB )