Search results for "proteins"

Hits ?▲	Authors	Title	Venue	Year	Link
11	Ahmet Yildirim, Mustafa Tekpinar	Building Quantitative Bridges between Dynamics and Sequences of SARS-CoV-2 Main Protease and a Diverse Set of Thirty-Two Proteins.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
11	Marley L. Samways, Hannah E. Bruce Macdonald, Richard D. Taylor, Jonathan W. Essex	Water Networks in Complexes between Proteins and FDA-Approved Drugs.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
11	Yunan Luo	Sensing the shape of functional proteins with topology.	Nat. Comput. Sci.	2023	DBLP DOI BibTeX RDF
11	Jacob Saldinger, Matt Raymond, Paolo Elvati, Angela Violi	Domain-agnostic predictions of nanoscale interactions in proteins and nanoparticles.	Nat. Comput. Sci.	2023	DBLP DOI BibTeX RDF
11	G. Sravya, Gnanaprakash Jeyaraj, Aanand Vadivelu, Habeeb Shaik Mohideen, A. Swapna Geetanjali	Molecular characterization of chilli leaf curl Ahmedabad virus: homology modelling and evaluation of viral proteins interacting with host protein SnRK1 and docking against flavonoids - an in silico approach.	Theory Biosci.	2023	DBLP DOI BibTeX RDF
11	Milos Musil, Andrej Jezik, Jana Horackova, Simeon Borko, Petr Kabourek, Jirí Damborský, David Bednar	FireProt 2.0: web-based platform for the fully automated design of thermostable proteins.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
11	Qiaozhen Meng, Fei Guo 0001, Jijun Tang	Improved structure-related prediction for insufficient homologous proteins using MSA enhancement and pre-trained language model.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
11	Chun He, Xinhai Ye, Yi Yang 0001, Liya Hu, Yuxuan Si, Xianxin Zhao, Longfei Chen, Qi Fang, Ying Wei 0001, Fei Wu 0001, Gongyin Ye	DeepAlgPro: an interpretable deep neural network model for predicting allergenic proteins.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
11	Jorge Beltrán, Lisandra Herrera Belén, Jorge G. Farias, Mauricio Zamorano, Nicolás Lefin, Javiera Miranda, Fernanda Parraguez Contreras	VirusHound-I: prediction of viral proteins involved in the evasion of host adaptive immune response using the random forest algorithm and generative adversarial network for data augmentation.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
11	Jingxuan Zhao, Jianqiang Sun, Stella C. Shuai, Qi Zhao, Jianwei Shuai	Predicting potential interactions between lncRNAs and proteins via combined graph auto-encoder methods.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
11	Upendra Kumar Pradhan, Prabina Kumar Meher, Sanchita Naha, Soumen Pal, Ajit Gupta, Rajender Parsad	PlDBPred: a novel computational model for discovery of DNA binding proteins in plants.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
11	Jianfeng Sun, Arulsamy Kulandaisamy, Jinlong Ru, M. Michael Gromiha, Adam P. Cribbs	TMKit: a Python interface for computational analysis of transmembrane proteins.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
11	Gábor E. Tusnády, András Zeke, Zsofia E. Kalman, Marie Fatoux-Ardore, Sylvie Ricard-Blum, Toby J. Gibson, Laszlo Dobson	LeishMANIAdb: a comparative resource for Leishmania proteins.	Database J. Biol. Databases Curation	2023	DBLP DOI BibTeX RDF
11	Ana Julia Velez Rueda, Franco Leonardo Bulgarelli, Nicolas Palopoli, Gustavo D. Parisi	CaviDB: a database of cavities and their features in the structural and conformational space of proteins.	Database J. Biol. Databases Curation	2023	DBLP DOI BibTeX RDF
11	Olivia Garland, Mariia Radaeva, Mohit Pandey, Artem Cherkasov, Nada Lallous	PurificationDB: database of purification conditions for proteins.	Database J. Biol. Databases Curation	2023	DBLP DOI BibTeX RDF
11	Chao Hou, Xinxin Wang, Haotai Xie, Taoyu Chen, Peiyu Zhu, Xiaofeng Xu, Kaiqiang You, Tingting Li	PhaSepDB in 2022: annotating phase separation-related proteins with droplet states, co-phase separation partners and other experimental information.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
11	Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös 0002, Silvio C. E. Tosatto, Damiano Piovesan	CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
11	Louis Philip Benoit Bouvrette, Xiaofeng Wang, Jonathan Boulais, Jian Kong, Easin Uddin Syed, Steven M. Blue, Lijun Zhan, Sara Olson, Rebecca Stanton, Xintao Wei, Brian Yee, Eric L. Van nostrand, Xiang-Dong Fu, Christopher B. Burge, Brenton R. Graveley, Gene W. Yeo, Eric Lécuyer	RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
11	Kuerbannisha Amahong, Wei Zhang, Ying Zhou, Song Zhang, Jiayi Yin, Fengcheng Li, Hong-Quan Xu, Tian-Ci Yan, Zi-Xuan Yue, Yu-Hong Liu, Tingjun Hou, Yunqing Qiu, Lin Tao, Lianyi Han, Feng Zhu 0004	CovInter: interaction data between coronavirus RNAs and host proteins.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
11	Sébastien Bourdon, Pauline Herviou, Leïla Dumas, Eliana Destefanis, Andrea Zen, Anne Cammas, Stefania Millevoi, Erik Dassi	QUADRatlas: the RNA G-quadruplex and RG4-binding proteins database.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
11	Eliza C. Martin, Catalin F. Ion, Florin Ifrimescu, Laurentiu Spiridon, Jaap Bakker, Aska Goverse, Andrei-J. Petrescu	NLRscape: an atlas of plant NLR proteins.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
11	Damiano Piovesan, Alessio Del Conte, Damiano Clementel, Alexander Miguel Monzon, Martina Bevilacqua, Maria Cristina Aspromonte, Javier Iserte, Fernando E. Orti, Cristina Marino Buslje, Silvio C. E. Tosatto	MobiDB: 10 years of intrinsically disordered proteins.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
11	Stephen K. Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Henry Chao, Li Chen 0022, Paul A. Craig, Gregg V. Crichlow, Kenneth Dalenberg, Jose M. Duarte, Shuchismita Dutta, Maryam Fayazi, Zukang Feng, Justin W. Flatt, Sai Ganesan, Sutapa Ghosh, David S. Goodsell, Rachel Kramer Green, Vladimir Guranovic, Jeremy Henry, Brian P. Hudson, Igor Khokhriakov, Catherine L. Lawson, Yuhe Liang, Robert Lowe, Ezra Peisach, Irina Persikova, Dennis W. Piehl, Yana Rose, Andrej Sali, Joan Segura, Monica Sekharan, Chenghua Shao, Brinda Vallat, Maria Voigt, Ben M. Webb, John D. Westbrook, Shamara Whetstone, Jasmine Young, Arthur O. Zalevsky, Christine Zardecki	RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
11	András Hatos, João M. C. Teixeira, Susana Barrera-Vilarmau, Attila Horvath, Silvio C. E. Tosatto, Michele Vendruscolo, Mónika Fuxreiter	FuzPred: a web server for the sequence-based prediction of the context-dependent binding modes of proteins.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
11	Miaomiao Chen, Weizhi Zhang, Yujie Gou, Danyang Xu, Yuxiang Wei 0005, Dan Liu, Cheng Han, Xinhe Huang, Chengzhi Li, Wanshan Ning, Di Peng, Yu Xue 0001	GPS 6.0: an updated server for prediction of kinase-specific phosphorylation sites in proteins.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
11	John C. Braisted, Andrew Patt, Cole Tindall, Timothy Sheils, Jorge Neyra, Kyle Spencer, Tara Eicher, Ewy A Mathé	RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes.	Bioinform.	2023	DBLP DOI BibTeX RDF
11	Piyumi R. Amarasinghe, Lloyd Allison, Peter J. Stuckey, Maria Garcia de la Banda, Arthur M. Lesk, Arun Siddharth Konagurthu	Getting 'ϕψχal' with proteins: minimum message length inference of joint distributions of backbone and sidechain dihedral angles.	Bioinform.	2023	DBLP DOI BibTeX RDF
11	Jaesub Park, Sangyeon Lee, Kwansoo Kim, Jaegyun Jung, Doheon Lee	Large-scale prediction of adverse drug reactions-related proteins with network embedding.	Bioinform.	2023	DBLP DOI BibTeX RDF
11	Julian Dosch, Holger Bergmann, Vinh Tran, Ingo Ebersberger	FAS: assessing the similarity between proteins using multi-layered feature architectures.	Bioinform.	2023	DBLP DOI BibTeX RDF
11	Felix Teufel, Jan C. Refsgaard, Christian T. Madsen, Carsten Stahlhut, Mads Grønborg, Ole Winther, Dennis Madsen	DeepPeptide predicts cleaved peptides in proteins using conditional random fields.	Bioinform.	2023	DBLP DOI BibTeX RDF
11	Zi Hao Liu, João M. C. Teixeira, Oufan Zhang, Thomas E. Tsangaris, Jie Li, Claudiu C. Gradinaru, Teresa Head-Gordon, Julie D. Forman-Kay	Local Disordered Region Sampling (LDRS) for ensemble modeling of proteins with experimentally undetermined or low confidence prediction segments.	Bioinform.	2023	DBLP DOI BibTeX RDF
11	Vincenzo Laveglia, Milana Bazayeva, Claudia Andreini, Antonio Rosato	Hunting down zinc(II)-binding sites in proteins with distance matrices.	Bioinform.	2023	DBLP DOI BibTeX RDF
11	Ziqi Chen, Baoyi Zhang, Hongyu Guo, Prashant S. Emani, Trevor Clancy, Chongming Jiang, Mark Gerstein, Xia Ning, Chao Cheng, Martin Renqiang Min	Binding peptide generation for MHC Class I proteins with deep reinforcement learning.	Bioinform.	2023	DBLP DOI BibTeX RDF
11	Natália Teruel, Vinicius Magalhães Borges, Rafael Najmanovich	Surfaces: a software to quantify and visualize interactions within and between proteins and ligands.	Bioinform.	2023	DBLP DOI BibTeX RDF
11	Markus J. Buehler	Generative Pretrained Autoregressive Transformer Graph Neural Network applied to the Analysis and Discovery of Novel Proteins.	CoRR	2023	DBLP DOI BibTeX RDF
11	Shengchao Liu, Weitao Du, Yanjing Li, Zhuoxinran Li, Zhiling Zheng, Chenru Duan, Zhiming Ma, Omar Yaghi, Anima Anandkumar, Christian Borgs, Jennifer T. Chayes, Hongyu Guo, Jian Tang 0005	Symmetry-Informed Geometric Representation for Molecules, Proteins, and Crystalline Materials.	CoRR	2023	DBLP DOI BibTeX RDF
11	Gustavo Sganzerla Martinez, Mansi Dutt, Anuj Kumar, David J. Kelvin	Multiple Protein Profiler 1.0 (MPP): A webserver for predicting and visualizing physiochemical properties of proteins at the proteome level.	CoRR	2023	DBLP DOI BibTeX RDF
11	Anna Braghetto, Enzo Orlandini, Marco Baiesi	Interpretable machine learning of amino acid patterns in proteins: a statistical ensemble approach.	CoRR	2023	DBLP DOI BibTeX RDF
11	Lei Huang, Zheng Yuan 0002, Huihui Yan, Rong Sheng, Linjing Liu, Fuzhou Wang, Weidun Xie, Nanjun Chen, Fei Huang 0004, Songfang Huang, Ka-Chun Wong, Yaoyun Zhang	DiffDTM: A conditional structure-free framework for bioactive molecules generation targeted for dual proteins.	CoRR	2023	DBLP DOI BibTeX RDF
11	Haoyue Wang, Li Pan, Bo Yang 0036, Junqiang Jiang, Wenbin Li 0005	A multi-layer refined network model for the identification of essential proteins.	CoRR	2023	DBLP DOI BibTeX RDF
11	Raghav Jumade, Nicolas P. D. Sawaya	Data is often loadable in short depth: Quantum circuits from tensor networks for finance, images, fluids, and proteins.	CoRR	2023	DBLP DOI BibTeX RDF
11	Soojung Yang, Rafael Gómez-Bombarelli	Chemically Transferable Generative Backmapping of Coarse-Grained Proteins.	CoRR	2023	DBLP DOI BibTeX RDF
11	Yizheng Wang, Yixiao Zhai, Yijie Ding, Quan Zou 0001	SBSM-Pro: Support Bio-sequence Machine for Proteins.	CoRR	2023	DBLP DOI BibTeX RDF
11	Bakr Ahmed Taha, Qussay Al-Jubouri, Yousif Al Mashhadany, Mohd Hadri Hafiz Mokhtar, Mohd Saiful Dzulkefly Zan, Ahmad Ashrif A. Bakar, Norhana Arsad	Density estimation of SARS-CoV2 spike proteins using super pixels segmentation technique.	Appl. Soft Comput.	2023	DBLP DOI BibTeX RDF
11	Hongliang Zou, Zizheng Yu, Zhijian Yin	Integrating temporal and spatial variabilities for identifying ion binding proteins in phage.	J. Bioinform. Comput. Biol.	2023	DBLP DOI BibTeX RDF
11	Chaitra Mallasandra Krishnappa, Pratishtha Rai, Ayesha Zeba, Anjali D. Ganjiwale	Residue interaction network analysis and molecular dynamics simulation of 6K viroporin: Chikungunya virus channel proteins.	Int. J. Comput. Biol. Drug Des.	2023	DBLP DOI BibTeX RDF
11	Akash Pandey, Elaine Liu, Jacob Graham, Wei Chen 0041, Sinan Keten	B-factor prediction in proteins using a sequence-based deep learning model.	Patterns	2023	DBLP DOI BibTeX RDF
11	Zhangzhi Xue, Tiansheng Zhu, Fangfei Zhang, Cheng Zhang, Nan Xiang, Liujia Qian, Xiao Yi, Yaoting Sun, Wei Liu, Xue Cai, Linyan Wang, Xizhe Dai, Liang Yue, Lu Li, Thang Viet Pham, Sander R. Piersma, Qi Xiao, Meng Luo, Cong Lu, Jiang Zhu, Yongfu Zhao, Guangzhi Wang, Junhong Xiao, Tong Liu, Zhiyu Liu, Yi He, Qijun Wu, Tingting Gong, Jianqin Zhu, Zhiguo Zheng, Juan Ye, Yan Li, Connie R. Jimenez, Jun A, Tiannan Guo	DPHL v.2: An updated and comprehensive DIA pan-human assay library for quantifying more than 14,000 proteins.	Patterns	2023	DBLP DOI BibTeX RDF
11	Gaoshi Li, Xinlong Luo 0002, Zhipeng Hu, Jingli Wu, Wei Peng, Jiafei Liu, Xiaoshu Zhu	Essential proteins discovery based on dominance relationship and neighborhood similarity centrality.	Health Inf. Sci. Syst.	2023	DBLP DOI BibTeX RDF
11	Fuyi Li, Xudong Guo, Yue Bi, Runchang Jia, Miranda E. Pitt, Shirui Pan, Shuqin Li, Robin B. Gasser, Lachlan J. M. Coin, Jiangning Song	Digerati - A multipath parallel hybrid deep learning framework for the identification of mycobacterial PE/PPE proteins.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
11	Yutong Ming, Hongzhi Liu, Yizhi Cui, Shaoyong Guo, Yijie Ding, Ruijun Liu	Identification of DNA-binding proteins by Kernel Sparse Representation via L2,1-matrix norm.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
11	Arzu Mijit, Xiaona Wang, Yanlin Li, Hangwei Xu, Yingjun Chen, Weiwei Xue	Mapping synthetic binding proteins epitopes on diverse protein targets by protein structure prediction and protein-protein docking.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
11	Duanzhi Wu, Xin Fang, Kai Luan, Qijin Xu, Shiqi Lin, Shiying Sun, Jiaying Yang, Bingying Dong, Balachandran Manavalan, Zhijun Liao	Identification of SH2 domain-containing proteins and motifs prediction by a deep learning method.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
11	Muhammad K. N. Mursalim, Tati Latifah Rajab Mengko, Rukman Hertadi, Ayu Purwarianti, Meredita Susanty	BiCaps-DBP: Predicting DNA-binding proteins from protein sequences using Bi-LSTM and a 1D-capsule network.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
11	Chao Wang 0043, Qiang Yang	ScerePhoSite: An interpretable method for identifying fungal phosphorylation sites in proteins using sequence-based features.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
11	Jiwei Pan, Yueying Gao, Huirui Han, Tao Pan, Jing Guo, Si Li, Juan Xu 0001, Yongsheng Li 0001	Multi-omics characterization of RNA binding proteins reveals disease comorbidities and potential drugs in COVID-19.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
11	Viet Hoang Man, Xibing He, Phuong H. Nguyen, Celeste Sagui, Christopher Roland, Xiang-Qun Xie, Junmei Wang	Unpolarized laser method for infrared spectrum calculation of amide I C=O bonds in proteins using molecular dynamics simulation.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
11	Jingyu Wang, Haihang Zhou, Yuxiang Wang, Mengdie Xu, Yun Yu, Junjie Wang, Yun Liu	Prediction of submitochondrial proteins localization based on Gene Ontology.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
11	Qian Wang, Teng Xu, Kai Xu, Zhongqiu Lu, Jianchao Ying	Prediction of transport proteins from sequence information with the deep learning approach.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
11	Hamed Ghazikhani, Gregory Butler	Enhanced identification of membrane transport proteins: a hybrid approach combining ProtBERT-BFD and convolutional neural networks.	J. Integr. Bioinform.	2023	DBLP DOI BibTeX RDF
11	Sara Duarte-Pereira, Sérgio Matos, José Luís Oliveira, Raquel M. Silva	Study of NAD-interacting proteins highlights the extent of NAD regulatory roles in the cell and its potential as a therapeutic target.	J. Integr. Bioinform.	2023	DBLP DOI BibTeX RDF
11	Georgi Dyankov, Petia Genova-Kalou, Tinko A. Eftimov, Sanaz Shoar Ghaffari, Vihar Mankov, Hristo Kisov, Petar Veselinov, Evdokia Hikova, Nikola Malinowski	Binding of SARS-CoV-2 Structural Proteins to Hemoglobin and Myoglobin Studied by SPR and DR LPG.	Sensors	2023	DBLP DOI BibTeX RDF
11	Anna V. Shik, Irina A. Stepanova, Irina A. Doroshenko, Tatyana A. Podrugina, Mikhail K. Beklemishev	Carbocyanine-Based Optical Sensor Array for the Discrimination of Proteins and Rennet Samples Using Hypochlorite Oxidation.	Sensors	2023	DBLP DOI BibTeX RDF
11	Young Seek Cho, So-Jung Gwak	Novel Sensing Technique for Stem Cells Differentiation Using Dielectric Spectroscopy of Their Proteins.	Sensors	2023	DBLP DOI BibTeX RDF
11	Loveday E. Lewin, Kate G. Daniels, Laurence D. Hurst	Genes for highly abundant proteins in Escherichia coli avoid 5' codons that promote ribosomal initiation.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
11	Brennica Marlow, Georg Kuenze, Jens Meiler, Julia Koehler Leman	Docking cholesterol to integral membrane proteins with Rosetta.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
11	Tian Cai, Li Xie 0002, Shuo Zhang 0010, Muge Chen, Di He 0003, Amitesh Badkul, Yang Liu, Hari Krishna Namballa, Michael Dorogan, Wayne W. Harding, Cameron Mura, Philip E. Bourne, Lei Xie 0006	End-to-end sequence-structure-function meta-learning predicts genome-wide chemical-protein interactions for dark proteins.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
11	Carlos A. Gandarilla-Pérez, Sergio Pinilla, Anne-Florence Bitbol, Martin Weigt	Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
11	Li Xie 0002, Lei Xie 0006	Elucidation of genome-wide understudied proteins targeted by PROTAC-induced degradation using interpretable machine learning.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
11	Michael A. Cunningham, Danielle Pins, Zoltán Dezso, Maricel Torrent, Aparna Vasanthakumar, Abhishek Pandey	PINNED: identifying characteristics of druggable human proteins using an interpretable neural network.	J. Cheminformatics	2023	DBLP DOI BibTeX RDF
11	Zhanheng Chen, Zhuhong You, Qinhu Zhang, Zhen-Hao Guo, Siguo Wang, Yanbin Wang	In silico prediction methods of self-interacting proteins: an empirical and academic survey.	Frontiers Comput. Sci.	2023	DBLP DOI BibTeX RDF
11	Patrick Emami, Aidan Perreault, Jeffrey N. Law, David Biagioni, Peter C. St. John	Plug & play directed evolution of proteins with gradient-based discrete MCMC.	Mach. Learn. Sci. Technol.	2023	DBLP DOI BibTeX RDF
11	Hongliang Zou, Wanting Yu	Integrating Low-Order and High-Order Correlation Information for Identifying Phage Virion Proteins.	J. Comput. Biol.	2023	DBLP DOI BibTeX RDF
11	Yuichi Shimaya, Kouichi Hirata	Correlated Mutations of Positions Among Structural Proteins in Delta and Omicron Variants for SARS-CoV-2 Amino Acid Sequences.	ICPRAM	2023	DBLP DOI BibTeX RDF
11	Shaomin Yan, Guang Wu	Possible Impacts of Extreme Solar/Cosmic Activity on the Mutation and Evolution of Coronavirus Spike Proteins.	ICTON	2023	DBLP DOI BibTeX RDF
11	Shaomin Yan, Guang Wu	Evolutional Analysis of Coronavirus Spike Proteins with Big-Data.	ICTON	2023	DBLP DOI BibTeX RDF
11	Francesco Di Luzio, Alessandro Paiardini, Federica Colonnese, Antonello Rosato, Massimo Panella	A Deep Neural Network for G-Quadruplexes Binding Proteins Classification.	IWANN (1)	2023	DBLP DOI BibTeX RDF
11	Ryota Nagashima, Uran Yamamoto, Kouichi Hirata	Distance-Based Analysis of Positions in Amino Acid Sequences for Structural Proteins of SARS-CoV-2 Delta and Omicron Variants.	IIAI-AAI	2023	DBLP DOI BibTeX RDF
11	Yuuto Kimura, Kotaro Kamitani, Carl Frederik Werner, Minoru Takeda, Masayuki Fukuzawa, Minoru Noda	A Study on Nanostructured Substrates of a LSPR Biosensor for Sensitive Detection of $\alpha$-Synuclein Amyloid Proteins.	SENSORS	2023	DBLP DOI BibTeX RDF
11	Paul Vincent Llanes, Geoffrey Solano, Marc Jermaine Pontiveros	Learning the Protein Language Model of SARS-CoV-2 Spike Proteins.	ICAIIC	2023	DBLP DOI BibTeX RDF
11	Wei Hu, Fan Zhang, Yajuan Feng	Contrastive Learning of Graph-Kernel-based Representations for Proteins.	ICMLC	2023	DBLP DOI BibTeX RDF
11	Sonia Lilia Mestizo Gutiérrez, Héctor-Gabriel Acosta-Mesa, Francisco García-Ortega, María Esther Jiménez-Cataño	Analysis of Proteins in Microscopic Skin Images Using Machine Vision Techniques as a Tool for Detecting Alzheimer's Disease.	WILE/HIS/CIAPP@MICAI	2023	DBLP DOI BibTeX RDF
11	Andrea M. Storås, Morten Magnø, Fredrik A. Fineide, Bernd Thiede, Xiangjun Chen, Inga Strümke, Pål Halvorsen, Tor P. Utheim, Michael A. Riegler	Identifying Important Proteins in Meibomian Gland Dysfunction with Explainable Artificial Intelligence.	CBMS	2023	DBLP DOI BibTeX RDF
11	Jing Hu, Yihang Du	Predicting Moonlighting Proteins from Protein Sequence.	BIOINFORMATICS	2023	DBLP DOI BibTeX RDF
11	Jinfeng Li, Shun Zhang, Chun Fang	PB_DBP: Identifying DNA-binding proteins using ProBert_BiLSTM model.	ICBDT	2023	DBLP DOI BibTeX RDF
11	Georgina Mirceva, Andreja Naumoski, Andrea Kulakov	Examination of Different Representations of Proteins Using Protein Ray-based Descriptor and Deep Learning Models.	MIPRO	2023	DBLP DOI BibTeX RDF
11	Baichuan Zhang, Luying He, Qi Wang, Zhuo Wang, Wenzheng Bao, Honglin Cheng	Mit Protein Transformer: Identification Mitochondrial Proteins with Transformer Model.	ICIC (3)	2023	DBLP DOI BibTeX RDF
11	Jianan Sui, Yuehui Chen, Yi Cao, Yaou Zhao	TAPE-Pero: Using Deep Representation Learning Model to Identify and Localize Peroxisomal Proteins.	ICIC (3)	2023	DBLP DOI BibTeX RDF
11	Lichun Zou, Peifu Bian, Haiyan Wang 0004, Jingjie Sha	Detection of Different Structural Proteins Using Solid-state Nanopores.	NEMS	2023	DBLP DOI BibTeX RDF
11	Xun Yao, Hongluan Li, Shichang Wang, Wei Xu, Jian Ma, Jingwen Mo	Electrically Facilitated Transport of Proteins through Glass Nanopores: Electroosmosis versus Electrophoresis.	NEMS	2023	DBLP DOI BibTeX RDF
11	Lydie Lane, Kasun Samarasinghe, Pierre-André Michel	A federated query between neXtProt and OrthoDB retrieves 44 uncharacterized human proteins highly expressed in the brain and conserved in Drosophila melanogaster.	SWAT4HCLS	2023	DBLP BibTeX RDF
11	Petros Liakopoulous, Borbala Banfalvi, Xinyi Wang, Sina Majidian, Tarcisio Mendes de Farias, Christophe Dessimoz, Ana Claudia Sima	Towards predicting essential proteins via federated SPARQL queries.	SWAT4HCLS	2023	DBLP BibTeX RDF
11	Masanori Yamanaka	Data mining of electronic structure of proteins and quantum evolution.	IEEE Big Data	2023	DBLP DOI BibTeX RDF
11	Jayati H. Jui, Milos Hauskrecht	Uncovering the Effects of Genes, Proteins, and Medications on Functions of Wound Healing: A Dependency Rule-Based Text Mining Approach Leveraging GPT-4 based Evaluation.	BHI	2023	DBLP DOI BibTeX RDF
11	Yihang Bao, Yuanzhao Guo, Wenjie Li, Guan Ning Lin, Zehua Sun, Han Wang	Probing Transmembrane Proteins Binding Domain via Multi-level Molecule Learning.	BIBM	2023	DBLP DOI BibTeX RDF
11	Charalambos Chrysostomou	Deep Learning-Assisted Classification of Allergenic Proteins: An Exploration of Amino Acid Indices.	BIBM	2023	DBLP DOI BibTeX RDF
11	Zhipeng Hu, Gaoshi Li, Jingli Wu, Xinlong Luo 0002, Jiafei Liu, Wei Peng, Xiaoshu Zhu	Essential proteins identification based on weak consensus model and neighborhood aggregation centrality.	BIBM	2023	DBLP DOI BibTeX RDF
11	Jewelle D. Stone, Habib Boloorchi Tabrizi, Rittika Shamsuddin	Enhancing ProteinBERT: Integrating Intrinsically Disordered Proteins for Comprehensive Proteomic Predictions.	BIBM	2023	DBLP DOI BibTeX RDF
11	Donghyeok Ma, Joon Hyub Lee, Taegyu Jin, Sang-Hyun Lee, Ho Min Kim, Seok-Hyung Bae	Sketching Proteins with Bare Hands in VR.	UIST (Adjunct Volume)	2023	DBLP DOI BibTeX RDF
11	Sidra Liaqat, Saiqa Andleeb, Maryum Bibi, Wajid Arshad Abbasi	An In-Silico Identification of Anti-CRISPR Proteins by Using Descriptors Derived from the Primary Structures.	FIT	2023	DBLP DOI BibTeX RDF