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Results
Found 16824 publication records. Showing 16824 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Dabin Jeong, Bonil Koo, Minsik Oh, Tae-Bum Kim, Sun Kim |
GOAT: Gene-level biomarker discovery from multi-Omics data using graph ATtention neural network for eosinophilic asthma subtype.  |
Bioinform.  |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Fabio Fassetti, Simona E. Rombo, Cristina Serrao |
Discriminative pattern discovery for the characterization of different network populations. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Thomas Weber, Marco Raffaele Cosenza, Jan Korbel |
MosaiCatcher v2: a single-cell structural variations detection and analysis reference framework based on Strand-seq. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Bassel Ghaddar, Subhajyoti De |
Hierarchical and automated cell-type annotation and inference of cancer cell of origin with Census. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | David Teschner, David Gomez-Zepeda, Arthur Declercq, Mateusz K. Lacki, Seymen Avci, Konstantin Bob, Ute Distler, Thomas Michna, Lennart Martens, Stefan Tenzer, Andreas Hildebrandt 0001 |
Ionmob: a Python package for prediction of peptide collisional cross-section values. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Altay Yuzeir, David Alejandro Bejarano, Stephan Grein, Jan Hasenauer, Andreas Schlitzer, Jiangyan Yu |
IntestLine: a shiny-based application to map the rolled intestinal tissue onto a line. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Safaa Diab, Amir Nassereldine, Mohammed Alser, Juan Gómez-Luna, Onur Mutlu, Izzat El Hajj |
A framework for high-throughput sequence alignment using real processing-in-memory systems. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jace Webster, Ha X. Dang, Pradeep S. Chauhan, Wenjia Feng, Alex Shiang, Peter K. Harris, Russell K. Pachynski, Aadel A Chaudhuri, Christopher A. Maher |
PACT: a pipeline for analysis of circulating tumor DNA. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Wei Wei, Andrew Millward, David Koslicki |
Finding phylogeny-aware and biologically meaningful averages of metagenomic samples: L2UniFrac. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yunxiang Li, Yumeng Wei, Sheng Xu, Qingxiong Tan, Licheng Zong, Jiuming Wang, Yixuan Wang, Jiayang Chen, Liang Hong, Yu Li 0006 |
AcrNET: predicting anti-CRISPR with deep learning. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Neng Huang, Heng Li |
compleasm: a faster and more accurate reimplementation of BUSCO. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: KR4SL: knowledge graph reasoning for explainable prediction of synthetic lethality. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Anupam Gautam, Wenhuan Zeng, Daniel H. Huson |
MeganServer: facilitating interactive access to metagenomic data on a server. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ying Zhang, Zhikang Wang, Yiwen Zhang, Shanshan Li, Yuming Guo, Jiangning Song, Dong-Jun Yu |
Interpretable prediction models for widespread m6A RNA modification across cell lines and tissues. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: Snapper: high-sensitive detection of methylation motifs based on Oxford Nanopore reads. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Bansho Masutani, Riki Kawahara, Shinichi Morishita |
Decomposing mosaic tandem repeats accurately from long reads. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Wei Qu, Ronghui You, Hiroshi Mamitsuka, Shanfeng Zhu |
DeepMHCI: an anchor position-aware deep interaction model for accurate MHC-I peptide binding affinity prediction. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Nikolai Romashchenko, Benjamin Linard, Fabio Pardi, Eric Rivals |
EPIK: precise and scalable evolutionary placement with informative k-mers. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Kristian K. Ullrich, Nikoleta E. Glytnasi |
oggmap: a Python package to extract gene ages per orthogroup and link them with single-cell RNA data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Harshavardhan Khare, Nathaly Dongo Mendoza, Chiara Zurzolo |
CellWalker: a user-friendly and modular computational pipeline for morphological analysis of microscopy images. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Can (sam) Chen, Jingbo Zhou, Fan Wang, Xue (Steve) Liu, Dejing Dou |
Structure-aware protein self-supervised learning. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | José Pinto 0007, Rafael S. Costa, Leonardo Alexandre, João Ramos, Rui Oliveira 0002 |
SBML2HYB: a Python interface for SBML compatible hybrid modeling. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: Python interfaces for the Smoldyn simulator. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Fabio Boniolo, Markus Hoffmann, Norman Roggendorf, Bahar Tercan, Jan Baumbach, Mauro A. A. Castro, A. Gordon Robertson, Dieter Saur, Markus List |
spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Riccardo Scandino, Federico Calabrese, Alessandro Romanel |
Synggen: fast and data-driven generation of synthetic heterogeneous NGS cancer data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Philip C. Dishuck, Allison N. Rozanski, Glennis Logsdon, David Porubsky, Evan E. Eichler |
GAVISUNK: genome assembly validation via inter-SUNK distances in Oxford Nanopore reads. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Dylan Feldner-Busztin, Panos Firbas Nisantzis, Shelley Jane Edmunds, Gergely Boza, Fernando Racimo, Shyam Gopalakrishnan, Morten Tønsberg Limborg, Leo Lahti, Gonzalo G. de Polavieja |
Dealing with dimensionality: the application of machine learning to multi-omics data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Mingqian Zhang, Wenke Zhang, Yuzhu Chen, Jin Zhao, Shunyao Wu, Xiaoquan Su |
Flex Meta-Storms elucidates the microbiome local beta-diversity under specific phenotypes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yi-Juan Hu, Glen A. Satten |
Compositional analysis of microbiome data using the linear decomposition model (LDM). |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Dmitry Konanov, Vladislav V. Babenko, Aleksandra M. Belova, Arina G. Madan, Daria I Boldyreva, Oksana E. Glushenko, Ivan Butenko, Dmitry E. Fedorov, Alexander I Manolov, Danil V. Krivonos, Vassili N. Lazarev, Vadim M. Govorun, Elena N. Ilina |
Snapper: high-sensitive detection of methylation motifs based on Oxford Nanopore reads. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Priyanka Rana, Arcot Sowmya, Erik Meijering, Yang Song 0001 |
Imbalanced classification for protein subcellular localization with multilabel oversampling. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Anthony J. Aylward, Semar Petrus, Allen Mamerto, Nolan T. Hartwick, Todd P. Michael |
PanKmer: k-mer-based and reference-free pangenome analysis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhikang Wang, Yue Bi, Tong Pan, Xiaoyu Wang, Chris Bain, Richard Bassed, Seiya Imoto, Jianhua Yao 0001, Roger J. Daly, Jiangning Song |
Targeting tumor heterogeneity: multiplex-detection-based multiple instance learning for whole slide image classification. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Richard J. Packer, Alex T. Williams, William Hennah, Micaela T. Eisenberg, Nick Shrine, Katherine A Fawcett, Willow Pearson, Anna L. Guyatt, Ahmed Edris, Edward J. Hollox, Mikko Marttila, Balasubramanya S. Rao, John Raymond Bratty, Louise V. Wain, Frank Dudbridge, Martin D. Tobin |
DeepPheWAS: an R package for phenotype generation and association analysis for phenome-wide association studies. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Pooya Borzou, Jafar Ghaisari, Iman Izadi, Yasin Eshraghi, Yousof Gheisari |
A novel strategy for dynamic modeling of genome-scale interaction networks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Wenyi Yang, Pingping Wang, Meng Luo 0001, Yideng Cai, Chang Xu, Guangfu Xue, Xiyun Jin, Rui Cheng 0003, Jinhao Que, Fenglan Pang, Yuexin Yang, Huan Nie, Qinghua Jiang, Zhigang Liu, Zhaochun Xu |
DeepCCI: a deep learning framework for identifying cell-cell interactions from single-cell RNA sequencing data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ruimin Wang, Miaoshan Lu, Shaowei An, Jinyin Wang, Changbin Yu |
3D-MSNet: a point cloud-based deep learning model for untargeted feature detection and quantification in profile LC-HRMS data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jun Liu, Dong Liu, Gui-Jun Zhang |
DeepUMQA3: a web server for accurate assessment of interface residue accuracy in protein complexes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jian Liu, Fubin Ma, Yongdi Zhu, Naiqian Zhang, Lingming Kong, Jia Mi, Haiyan Cong, Rui Gao, Mingyi Wang, Yusen Zhang |
MaxCLK: discovery of cancer driver genes via maximal clique and information entropy of modules. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Kim Philipp Jablonski, Niko Beerenwinkel |
Coherent pathway enrichment estimation by modeling inter-pathway dependencies using regularized regression. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Chen Li, Xiaoyang Chen, Shengquan Chen, Rui Jiang, Xuegong Zhang |
simCAS: an embedding-based method for simulating single-cell chromatin accessibility sequencing data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jiaqian Yan, Ming Ma, Zhenhua Yu 0002 |
bmVAE: a variational autoencoder method for clustering single-cell mutation data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Emad Alamoudi, Yannik Schälte, Robert Müller, Jörn Starruß, Nils Bundgaard, Frederik Graw, Lutz Brusch, Jan Hasenauer |
FitMultiCell: simulating and parameterizing computational models of multi-scale and multi-cellular processes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Rasmus Amund Henriksen, Lei Zhao, Thorfinn Sand Korneliussen |
NGSNGS: next-generation simulator for next-generation sequencing data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Tiago Cabral Borelli, Gabriel Santos Arini, Luís G. P. Feitosa, Pieter C. Dorrestein, Norberto Peporine Lopes, Ricardo Roberto da Silva |
Improving annotation propagation on molecular networks through random walks: introducing ChemWalker. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Samuel Sledzieski, Kapil Devkota, Rohit Singh 0001, Lenore Cowen, Bonnie Berger |
TT3D: Leveraging precomputed protein 3D sequence models to predict protein-protein interactions. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Russell B. Davidson, Mark Coletti, Mu Gao, Bryan Piatkowski, Avinash Sreedasyam, Farhan Quadir, David J. Weston, Jeremy Schmutz, Jianlin Cheng, Jeffrey Skolnick, Jerry M. Parks, Ada Sedova |
Predicted structural proteome of Sphagnum divinum and proteome-scale annotation. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Manuel Glöckler, Andreas Dräger, Reihaneh Mostolizadeh |
Hierarchical modelling of microbial communities. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Samuel Neuenschwander, Diana I Cruz Dávalos, Lucas Anchieri, Bárbara Sousa da Mota, Davide Bozzi, Simone Rubinacci, Olivier Delaneau, Simon Rasmussen, Anna-Sapfo Malaspinas |
Mapache: a flexible pipeline to map ancient DNA. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Zerong Feng, Jiejie Feng, Baoyi Zhang, Yuhan Fei, Hongsheng Zhang, Ji Huang |
PhasiHunter: a robust phased siRNA regulatory cascade mining tool based on multiple reference sequences. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Grzegorz Chojnowski, Rafal Zaborowski, Marcin Magnus, Sunandan Mukherjee, Janusz M. Bujnicki |
RNA 3D structure modeling by fragment assembly with small-angle X-ray scattering restraints. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Shabnam Sahay, Shishir Adhikari, Sahand Hormoz, Shaon Chakrabarti |
An improved rhythmicity analysis method using Gaussian Processes detects cell-density dependent circadian oscillations in stem cells. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Pengcheng Zeng, Yuanyuan Ma, Zhixiang Lin |
scAWMV: an adaptively weighted multi-view learning framework for the integrative analysis of parallel scRNA-seq and scATAC-seq data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Longendri Aguilera-Mendoza, Sebastián Ayala-Ruano, Felix Martinez-Rios, Edgar Chávez, César R. García-Jacas, Carlos A. Brizuela, Yovani Marrero-Ponce |
StarPep Toolbox: an open-source software to assist chemical space analysis of bioactive peptides and their functions using complex networks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Anowarul Kabir, Manish Bhattarai, Kim Ø. Rasmussen, Amarda Shehu, Anny Usheva, Alan R. Bishop, Boian S. Alexandrov |
Examining DNA breathing with pyDNA-EPBD. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Minghao Yang, Zhi-An Huang, Wei Zhou, Junkai Ji, Jun Zhang, Shan He, Zexuan Zhu |
MIX-TPI: a flexible prediction framework for TCR-pMHC interactions based on multimodal representations. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xinyue Wang, Leonard Dervishi, Wen Tao Li, Erman Ayday, Xiaoqian Jiang, Jaideep Vaidya |
Privacy-preserving federated genome-wide association studies via dynamic sampling. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ke Yan 0003, Hongwu Lv, Yichen Guo, Wei Peng, Bin Liu 0014 |
sAMPpred-GAT: prediction of antimicrobial peptide by graph attention network and predicted peptide structure. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Bin Wang, Kun Liu 0028, Yaohang Li, Jianxin Wang 0001 |
DFHiC: a dilated full convolution model to enhance the resolution of Hi-C data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Leonardo V. Castorina, Rokas Petrenas, Kartic Subr, Christopher W. Wood |
PDBench: evaluating computational methods for protein-sequence design. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Kyle Smith, Cheng Ye, Yatish Turakhia |
Tracking and curating putative SARS-CoV-2 recombinants with RIVET. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Garrett M. Ginell, Aidan J. Flynn, Alex S. Holehouse |
SHEPHARD: a modular and extensible software architecture for analyzing and annotating large protein datasets. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Tao Wang, Jinjin Yang, Yifu Xiao, Jingru Wang, Yuxian Wang, Xi Zeng, Yongtian Wang, Jiajie Peng |
DFinder: a novel end-to-end graph embedding-based method to identify drug-food interactions. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ludwig Geistlinger, Roger Vargas, Tyrone Lee, Joshua Pan, Edward L. Huttlin, Robert Gentleman |
BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yekaterina Shulgina, Sean R. Eddy |
Codetta: predicting the genetic code from nucleotide sequence. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Chuan-Yuan Wang, Shiyu Xu, Duanchen Sun, Zhi-Ping Liu |
ActivePPI: quantifying protein-protein interaction network activity with Markov random fields. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: NeoFox: annotating neoantigen candidates with neoantigen features. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Amir Feizi, Kamalika Ray |
otargen: GraphQL-based R package for tidy data accessing and processing from Open Targets Genetics. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Petr Triska, Fabian Amman, Lukas Endler, Andreas Bergthaler |
WAVES (Web-based tool for Analysis and Visualization of Environmental Samples) - a web application for visualization of wastewater pathogen sequencing results. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Wuwei Tan, Yang Shen |
Multimodal learning of noncoding variant effects using genome sequence and chromatin structure. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Justas Dapkunas, Mindaugas Margelevicius |
The COMER web server for protein analysis by homology. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: Prediction of gene co-expression from chromatin contacts with graph attention network. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Muyu Yang, Jian Ma 0004 |
UNADON: transformer-based model to predict genome-wide chromosome spatial position. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jelena Banjac, Norbert Sprenger, Shaillay Kumar Dogra |
Microbiome Toolbox: methodological approaches to derive and visualize microbiome trajectories. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Federico Bianca, Emilio Ispano, Ermanno Gazzola, Enrico Lavezzo, Paolo Fontana, Stefano Toppo |
FunTaxIS-lite: a simple and light solution to investigate protein functions in all living organisms. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Natália Teruel, Vinicius Magalhães Borges, Rafael Najmanovich |
Surfaces: a software to quantify and visualize interactions within and between proteins and ligands. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Amy Dong, Xiaomin Bao |
GPSmatch: an R package for comparing Genomic-binding Profile Similarity among transcriptional regulators using customizable databases. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Puneet Rawat, Divya Sharma, R. Prabakaran, Fathima Ridha, Mugdha Mohkhedkar, Vani Janakiraman, M. Michael Gromiha |
Ab-CoV: a curated database for binding affinity and neutralization profiles of coronavirus-related antibodies. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Lyla Atta, Arpan Sahoo, Jean Fan |
VeloViz: RNA velocity-informed embeddings for visualizing cellular trajectories. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Hongyu Zhao, Kun Han, Chao Gao, Vithal Madhira, Umit Topaloglu, Yong Lu, Guangxu Jin |
VOC-alarm: mutation-based prediction of SARS-CoV-2 variants of concern. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Stephan Fischer, Jesse A. Gillis |
Defining the extent of gene function using ROC curvature. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jonathan S. Abebe, Alexander M. Price, Katharina E. Hayer, Ian Mohr, Matthew D. Weitzman, Angus C. Wilson, Daniel P. Depledge |
DRUMMER - rapid detection of RNA modifications through comparative nanopore sequencing. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
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| 1 | Nahuel Escobedo, Ronaldo Romario Tunque Cahui, Gastón Caruso, Emilio Garcia-Rios, Layla Hirsh, Alexander Miguel Monzon, Gustavo D. Parisi, Nicolas Palopoli |
CoDNaS-Q: a database of conformational diversity of the native state of proteins with quaternary structure. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jun Zhang, Fan Nie, Neng Huang, Peng Ni, Feng Luo 0001, Jianxin Wang 0001 |
Fec: a fast error correction method based on two-rounds overlapping and caching. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Wei-Zhi Song, Shan Zhang, Torsten Thomas |
MarkerMAG: linking metagenome-assembled genomes (MAGs) with 16S rRNA marker genes using paired-end short reads. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Daniel Osório 0004, Marieke L. Kuijjer, James J. Cai |
rPanglaoDB: an R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Elise Amblard, Jonathan Bac, Alexander Chervov, Vassili Soumelis, Andrei Yu. Zinovyev |
Hubness reduction improves clustering and trajectory inference in single-cell transcriptomic data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Mengqi Zhang, F. Richard Guo |
BSDE: barycenter single-cell differential expression for case-control studies. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
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| 1 | Marina Murillo-Recio, Ignacio Miguel Martínez de Lejarza Samper, Cristina Tuñí i Domínguez, Lluís Ribas de Pouplana, Adrian Gabriel Torres |
tRNAstudio: facilitating the study of human mature tRNAs from deep sequencing datasets. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
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| 1 | François Laurent, Hippolyte Verdier, Maxime Duval, Alexander Serov, Christian L. Vestergaard, Jean-Baptiste Masson |
TRamWAy: mapping physical properties of individual biomolecule random motion in large-scale single-particle tracking experiments. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Tianci Song, Kathleen K. Markham, Zhuliu Li, Kristen E. Muller, Kathleen Greenham, Rui Kuang |
Detecting spatially co-expressed gene clusters with functional coherence by graph-regularized convolutional neural network. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Boyang Tom Jin, Feng Xu, Raymond T. Ng, James C. Hogg |
Mian: interactive web-based microbiome data table visualization and machine learning platform. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Moosa Rezwani, Ali Akbar Pourfathollah, Farshid Noorbakhsh |
rbioapi: user-friendly R interface to biologic web services' API. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Marie Oestreich, Lisa Holsten, Shobhit Agrawal, Kilian Dahm, Philipp Koch, Han Jin, Matthias Becker 0003, Thomas Ulas |
hCoCena: horizontal integration and analysis of transcriptomics datasets. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Peter McHale, Aaron R. Quinlan |
trfermikit: a tool to discover VNTR-associated deletions. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Gregory J. Boggy, G. W. McElfresh, Eisa Mahyari, Abigail B. Ventura, Scott G. Hansen, Louis J. Picker, Benjamin N. Bimber |
BFF and cellhashR: analysis tools for accurate demultiplexing of cell hashing data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Shumin Ren, Yanwen Jin, Yalan Chen, Bairong Shen |
CRPMKB: a knowledge base of cancer risk prediction models for systematic comparison and personalized applications. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Xian F. Mallory, Luay Nakhleh |
SimSCSnTree: a simulator of single-cell DNA sequencing data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Chen Lyu, Manyan Huang, Nianjun Liu, Zhongxue Chen, Philip J. Lupo, Benjamin Tycko, John S. Witte, Charlotte A. Hobbs, Ming Li |
Random field modeling of multi-trait multi-locus association for detecting methylation quantitative trait loci. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jonathan Moody, Tsukasa Kouno, Jen-Chien Chang, Yoshinari Ando, Piero Carninci, Jay W. Shin, Chung-Chau Hon |
SCAFE: a software suite for analysis of transcribed cis-regulatory elements in single cells. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
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![[Valid RSS]](Pics/valid-rss.png "Validate my RSS feed")
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