Search results for "RNA"

Hits ?▲	Authors	Title	Venue	Year	Link
10	Chaitanya K. Joshi, Arian R. Jamasb, Ramón Viñas 0001, Charles Harris, Simon V. Mathis, Pietro Liò	Multi-State RNA Design with Geometric Multi-Graph Neural Networks.	CoRR	2023	DBLP DOI BibTeX RDF
10	Jing Gong, Minsheng Hao, Xingyi Cheng, Xin Zeng, Chiming Liu, Jianzhu Ma, Xuegong Zhang, Taifeng Wang, Le Song	xTrimoGene: An Efficient and Scalable Representation Learner for Single-Cell RNA-Seq Data.	CoRR	2023	DBLP DOI BibTeX RDF
10	Sofya Lipnitskaya	regulAS: A Bioinformatics Tool for the Integrative Analysis of Alternative Splicing Regulome using RNA-Seq data.	CoRR	2023	DBLP DOI BibTeX RDF
10	Philip Fradkin, Ruian Shi, Bo Wang, Brendan J. Frey, Leo J. Lee	Splicing Up Your Predictions with RNA Contrastive Learning.	CoRR	2023	DBLP DOI BibTeX RDF
10	Jörg K. H. Franke, Frederic Runge, Frank Hutter	Scalable Deep Learning for RNA Secondary Structure Prediction.	CoRR	2023	DBLP DOI BibTeX RDF
10	Rui Yang, Wenrui Dai, Chenglin Li, Junni Zou, Dapeng Wu 0001, Hongkai Xiong	scBiGNN: Bilevel Graph Representation Learning for Cell Type Classification from Single-cell RNA Sequencing Data.	CoRR	2023	DBLP DOI BibTeX RDF
10	Yuta Hozumi, Guo-Wei Wei 0001	Analyzing Single Cell RNA Sequencing with Topological Nonnegative Matrix Factorization.	CoRR	2023	DBLP DOI BibTeX RDF
10	Arthur Imbert, Florian Mueller, Thomas Walter 0003	PointFISH - learning point cloud representations for RNA localization patterns.	CoRR	2023	DBLP DOI BibTeX RDF
10	Sizhen Li, Ning Dai, He Zhang, Apoorv Malik, David H. Mathews, Liang Huang 0001	LinearSankoff: Linear-time Simultaneous Folding and Alignment of RNA Homologs.	CoRR	2023	DBLP DOI BibTeX RDF
10	Sukwon Yun, Junseok Lee 0002, Chanyoung Park	Single-cell RNA-seq data imputation using Feature Propagation.	CoRR	2023	DBLP DOI BibTeX RDF
10	Yiren Jian, Chongyang Gao, Chen Zeng, Yunjie Zhao, Soroush Vosoughi	Knowledge from Large-Scale Protein Contact Prediction Models Can Be Transferred to the Data-Scarce RNA Contact Prediction Task.	CoRR	2023	DBLP DOI BibTeX RDF
10	Gyutaek Oh, Baekgyu Choi, Inkyung Jung, Jong Chul Ye	scHyena: Foundation Model for Full-Length Single-Cell RNA-Seq Analysis in Brain.	CoRR	2023	DBLP DOI BibTeX RDF
10	Yixuan Wang, Shuangyin Li, Shimin Di, Lei Chen	Single-Cell RNA-seq Synthesis with Latent Diffusion Model.	CoRR	2023	DBLP DOI BibTeX RDF
10	Mothe Rajesh, Sheshikala Martha	Analysis of transcriptome of single-cell RNA sequencing data using machine learning.	Soft Comput.	2023	DBLP DOI BibTeX RDF
10	Ritika Srivastava, Sunil K. Gupta, Farha Naaz, Parth Sarthi Sen Gupta, Madhu Yadav, Vishal Kumar Singh, Saroj Kumar Panda, Satyaranjan Biswal, Malay Kumar Rana, Satish Kumar Gupta, Dominique Schols, Ramendra K. Singh	Exploring antiviral potency of N-1 substituted pyrimidines against HIV-1 and other DNA/RNA viruses: Design, synthesis, characterization, ADMET analysis, docking, molecular dynamics and biological activity.	Comput. Biol. Chem.	2023	DBLP DOI BibTeX RDF
10	Xiang-Ming Wang, Gang Chen, Yi-Wu Dang, Jing Li, Ping Li, Zu-Yun Li	A comprehensive investigation regarding the clinical significance of ITGB4 in oral squamous cell carcinoma combining immunohistochemistry, RNA-seq, and microarray data.	Comput. Biol. Chem.	2023	DBLP DOI BibTeX RDF
10	Ke Li, Hongwei Wu, Zhenyu Yue, Yu Sun, Chuan Xia	A convolutional network and attention mechanism-based approach to predict protein-RNA binding residues.	Comput. Biol. Chem.	2023	DBLP DOI BibTeX RDF
10	Huishi Toh, Atefeh Bagheri, Colin N. Dewey, Ron M. Stewart, Lili Yan, Dennis Clegg, James A. Thomson, Peng Jiang	A Nile rat transcriptomic landscape across 22 organs by ultra-deep sequencing and comparative RNA-seq pipeline (CRSP).	Comput. Biol. Chem.	2023	DBLP DOI BibTeX RDF
10	Franklin Ingrid Kamga Youmbi, Vianney Kengne Tchendji, Clémentin Tayou Djamégni	P-FARFAR2: A multithreaded greedy approach to sampling low-energy RNA structures in Rosetta FARFAR2.	Comput. Biol. Chem.	2023	DBLP DOI BibTeX RDF
10	Jameel M. Abduljalil, Abdo A. Elfiky, El-Sayed T. A. Sayed, Maha M. AlKhazindar	Computational identification of drug-like marine natural products as potential RNA polymerase inhibitors against Nipah virus.	Comput. Biol. Chem.	2023	DBLP DOI BibTeX RDF
10	Qinli Zhang, Zhengwei Zhao, Fang Liu, Zhaowen Li	Uncertainty measurement for single cell RNA-seq data based on class-consistent technology with application to semi-supervised gene selection.	Appl. Soft Comput.	2023	DBLP DOI BibTeX RDF
10	Hengyi Zhang	Feature selection for single cell RNA sequencing data based on a noise-robust fuzzy relation and fuzzy evidence theory.	Appl. Soft Comput.	2023	DBLP DOI BibTeX RDF
10	Minakshi Biswas Hathiwala, Devangi Sojitra, Chandra Kanta Phukan, Gautam Hathiwala, Jignesh P. Chauhan, Sagar R. Khirsariya	Fuzzy topology on RNA shapes.	Appl. Soft Comput.	2023	DBLP DOI BibTeX RDF
10	Álvaro Rubio-Largo, Nuria Lozano-García, José M. Granado Criado, Miguel A. Vega-Rodríguez	Solving the RNA inverse folding problem through target structure decomposition and Multiobjective Evolutionary Computation.	Appl. Soft Comput.	2023	DBLP DOI BibTeX RDF
10	Maria Waldl, Thomas Spicher, Ronny Lorenz, Irene K. Beckmann, Ivo L. Hofacker, Sarah von Löhneysen, Peter F. Stadler	Local RNA folding revisited.	J. Bioinform. Comput. Biol.	2023	DBLP DOI BibTeX RDF
10	Osman Dag, Merve Kasikci, Özlem Ilk, Metin Yesiltepe	GeneSelectML: a comprehensive way of gene selection for RNA-Seq data via machine learning algorithms.	Medical Biol. Eng. Comput.	2023	DBLP DOI BibTeX RDF
10	Iñaki Amatria-Barral, Jorge González-Domínguez, Juan Touriño	pRIblast: A highly efficient parallel application for comprehensive lncRNA-RNA interaction prediction.	Future Gener. Comput. Syst.	2023	DBLP DOI BibTeX RDF
10	Yubin Lee, Jaeseung Song, Yeonbin Jeong, Eunyoung Choi, Chulwoo Ahn, Wonhee Jang	Meta-analysis of single-cell RNA-sequencing data for depicting the transcriptomic landscape of chronic obstructive pulmonary disease.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
10	Sayed Haidar Abbas Raza, Ruimin Zhong, Shen Xing, Xiaoting Yu, Liang Chengcheng, Linsen Zan, Nicola M. Schreurs, Sameer D. Pant, Hongtao Lei	Based on the Cancer Genome Atlas Database Development of a prognostic model of RNA binding protein in stomach adenocarcinoma.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
10	Zhixuan Wu, Ziqiong Wang, Haodong Wu, Na Zheng, Dongdong Huang, Zhipeng Huang 0019, Hui Han, Jingxia Bao, Hongjie Xu, Rongrong Zhang, Zhou Du, Dazhou Wu	The pan-cancer multi-omics landscape of key genes of sialylation combined with RNA-sequencing validation.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
10	Yuchen Shi, Jian Wan, Xin Zhang 0079, Yuyu Yin	CL-Impute: A contrastive learning-based imputation for dropout single-cell RNA-seq data.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
10	Sirui Liang, Yanxi Zhao, Junru Jin, Jianbo Qiao, Ding Wang, Yu Wang, Leyi Wei	Rm-LR: A long-range-based deep learning model for predicting multiple types of RNA modifications.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
10	Sainan Zhang, Xingwang Liu, Yue Zhao, Ping Wang, Rui Yu, Peigang Xu, Yue Jiang, Liang Cheng 0006	Microbiome characteristics description of COVID-19 patients based on bulk RNA-seq and scRNA-Seq data.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
10	Riasat Azim, Shulin Wang, Shoaib Ahmed Dipu, Nazmin Islam, Munshi Rezwan Ala Muid, Md. Fazla Elahe, Mei Li	A patient-specific functional module and path identification technique from RNA-seq data.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
10	Debin Cheng, Zhao Zhang, Zhenzhou Mi, Weidong Tao, Dong Liu, Jun Fu, Hongbin Fan	Deciphering the heterogeneity and immunosuppressive function of regulatory T cells in osteosarcoma using single-cell RNA transcriptome.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
10	Jingyuan Zhang, Xinkui Liu, Zhihong Huang, Chao Wu, Fanqin Zhang, Aiqing Han, Antony Stalin, Shan Lu, Siyu Guo, Jiaqi Huang, Pengyun Liu, Rui Shi, Yiyan Zhai, Meilin Chen, Wei Zhou, Meirong Bai, Jiarui Wu	T cell-related prognostic risk model and tumor immune environment modulation in lung adenocarcinoma based on single-cell and bulk RNA sequencing.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
10	Ozgur Can Arican, Özgür Gümüs	PredDRBP-MLP: Prediction of DNA-binding proteins and RNA-binding proteins by multilayer perceptron.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
10	Shudong Wang, Yu Zhang, Yulin Zhang, Wenhao Wu, Lan Ye, YunYin Li, Jionglong Su, Shanchen Pang	scASGC: An adaptive simplified graph convolution model for clustering single-cell RNA-seq data.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
10	Jiwei Pan, Yueying Gao, Huirui Han, Tao Pan, Jing Guo, Si Li, Juan Xu 0001, Yongsheng Li 0001	Multi-omics characterization of RNA binding proteins reveals disease comorbidities and potential drugs in COVID-19.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
10	Maryam Zanjirband, Maryam Baharlooie, Z. Safaeinejad, Mohammad-Hossein Nasr-Esfahani	Transcriptomic screening to identify hub genes and drug signatures for PCOS based on RNA-Seq data in granulosa cells.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
10	Yulan Wang, Jian Zhao 0034, Jing Wu, Jingjing Liu, Yixuan Wang, Tianyi Xu, Meng Zhang, Minhui Zhuang, Lingxiao Zou, Wei Sun, Ping Han, Xiaofeng Song	Genome-wide perturbations of A-to-I RNA editing dysregulated circular RNAs promoting the development of cervical cancer.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
10	Yunkun Qu, Yingguang Wang, Shanxi Wang, Xiaojun Yu, Yi He, Rui Lu, Sheng Chen, Cheng Meng, Hanqing Xu, Wenbin Pei, Bowei Ni, Rui Zhang, Xiaojian Huang, Hongbo You	A comprehensive analysis of single-cell RNA transcriptome reveals unique SPP1+ chondrocytes in human osteoarthritis.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
10	Zehua Wang, Chen Chen, Jiaoyu Ai, Jiao Shu, Yi Ding, Wenjia Wang, Yaping Gao, Yongxu Jia, Yanru Qin	Identifying mitophagy-related genes as prognostic biomarkers and therapeutic targets of gastric carcinoma by integrated analysis of single-cell and bulk-RNA sequencing data.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
10	Enbin Yang, Hao Zhang, Zinan Zang, Zhiyong Zhou, Shuo Wang, Zhen Liu, Yuanning Liu	GCNfold: A novel lightweight model with valid extractors for RNA secondary structure prediction.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
10	Haiping Li, Zhikun Zhang, Lu Gan, Dianfa Fan, Xinjun Sun, Zhangbo Qian, Xiyu Liu 0004, Yong Huang	Signal Amplification-Based Biosensors and Application in RNA Tumor Markers.	Sensors	2023	DBLP DOI BibTeX RDF
10	Tchamie Kadja, Yvonne Sun, Vamsy P. Chodavarapu	Low-Cost, Real-Time Polymerase Chain Reaction System with Integrated RNA Extraction.	Sensors	2023	DBLP DOI BibTeX RDF
10	Erkan Bostanci, Engin Kocak, Metehan Unal, Mehmet Serdar Güzel, Koray Açici, Tunç Asuroglu	Machine Learning Analysis of RNA-seq Data for Diagnostic and Prognostic Prediction of Colon Cancer.	Sensors	2023	DBLP DOI BibTeX RDF
10	Tian Mou, Jianwen Liang, Trung-Nghia Vu, Mu Tian, Yi Gao 0002	A Comprehensive Landscape of Imaging Feature-Associated RNA Expression Profiles in Human Breast Tissue.	Sensors	2023	DBLP DOI BibTeX RDF
10	Bai Zhang, Hanwen Wu, Yan Wang, Chenxu Xuan, Jie Gao	scGAMNN: Graph Antoencoder-Based Single-Cell RNA Sequencing Data Integration Algorithm Using Mutual Nearest Neighbors.	IEEE J. Biomed. Health Informatics	2023	DBLP DOI BibTeX RDF
10	Azka Javaid, Hildreth Robert Frost	STREAK: A supervised cell surface receptor abundance estimation strategy for single cell RNA-sequencing data using feature selection and thresholded gene set scoring.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
10	Carolin Zitzmann, Christopher Dächert, Bianca Schmid, Hilde van der Schaar, Martijn van Hemert, Alan S. Perelson, Frank J. M. van Kuppeveld, Ralf Bartenschlager, Marco Binder, Lars Kaderali	Mathematical modeling of plus-strand RNA virus replication to identify broad-spectrum antiviral treatment strategies.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
10	Carole Chevalier, Jérôme Dorignac, Yahaya Ibrahim, Armelle Choquet, Alexandre David, Julie Ripoll, Eric Rivals, Frédéric Geniet, Nils-Ole Walliser, John Palmeri, Andrea Parmeggiani, Jean-Charles Walter	Physical modeling of ribosomes along messenger RNA: Estimating kinetic parameters from ribosome profiling experiments using a ballistic model.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
10	Tomer D. Mann, Eli Kopel, Eli Eisenberg, Erez Y. Levanon	Increased A-to-I RNA editing in atherosclerosis and cardiomyopathies.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
10	Junya Sunagawa, Ryo Komorizono, Hyeongki Park, William S. Hart, Robin N. Thompson, Akiko Makino, Keizo Tomonaga, Shingo Iwami, Ryo Yamaguchi	Contact-number-driven virus evolution: A multi-level modeling framework for the evolution of acute or persistent RNA virus infection.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
10	Atara Neugroschl, Irina E. Catrina	TFOFinder: Python program for identifying purine-only double-stranded stretches in the predicted secondary structure(s) of RNA targets.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
10	Lian Liu, Yumeng Zhou, Xiujuan Lei	RMDGCN: Prediction of RNA methylation and disease associations based on graph convolutional network with attention mechanism.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
10	Bercem Dutagaci, Bingbing Duan, Chenxi Qiu, Craig D. Kaplan, Michael Feig	Characterization of RNA polymerase II trigger loop mutations using molecular dynamics simulations and machine learning.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
10	Joel Roca-Martínez, Hrishikesh Dhondge, Michael Sattler, Wim F. Vranken	Deciphering the RRM-RNA recognition code: A computational analysis.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
10	Lucrezia Patruno, Salvatore Milite, Riccardo Bergamin, Nicola Calonaci, Alberto d'Onofrio, Fabio Anselmi, Marco Antoniotti, Alex Graudenzi, Giulio Caravagna	A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
10	Xiangyun Qiu	Sequence similarity governs generalizability of de novo deep learning models for RNA secondary structure prediction.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
10	Momo Matsuda, Yasunori Futamura, Xiucai Ye, Tetsuya Sakurai	Distortion-free PCA on sample space for highly variable gene detection from single-cell RNA-seq data.	Frontiers Comput. Sci.	2023	DBLP DOI BibTeX RDF
10	Shuchang Zhao, Li Zhang, Xuejun Liu	AE-TPGG: a novel autoencoder-based approach for single-cell RNA-seq data imputation and dimensionality reduction.	Frontiers Comput. Sci.	2023	DBLP DOI BibTeX RDF
10	Gabriel Lozano, Nadia Atallah, Michael Levine	Nonparametric clustering of RNA-sequencing data.	Stat. Anal. Data Min.	2023	DBLP DOI BibTeX RDF
10	Qiqi Cun, Xiaojun Tong, Zhu Wang 0008, Miao Zhang	A new chaotic image encryption algorithm based on dynamic DNA coding and RNA computing.	Vis. Comput.	2023	DBLP DOI BibTeX RDF
10	Eric Lin, Boyuan Liu, Leann Lac, Daryl L. X. Fung, Carson K. Leung, Pingzhao Hu	scGMM-VGAE: a Gaussian mixture model-based variational graph autoencoder algorithm for clustering single-cell RNA-seq data.	Mach. Learn. Sci. Technol.	2023	DBLP DOI BibTeX RDF
10	Jirí C. Moravec, Robert Lanfear, David L. Spector, Sarah D. Diermeier, Alex Gavryushkin	Testing for Phylogenetic Signal in Single-Cell RNA-Seq Data.	J. Comput. Biol.	2023	DBLP DOI BibTeX RDF
10	Masaru Nakajima, Andrew D. Smith	Counting Distinguishable RNA Secondary Structures.	J. Comput. Biol.	2023	DBLP DOI BibTeX RDF
10	Zhen-Chang Wang, Jin-Xing Liu, Junliang Shang, Ling-Yun Dai, Chun-Hou Zheng 0001, Juan Wang	ARGLRR: A Sparse Low-Rank Representation Single-Cell RNA-Sequencing Data Clustering Method Combined with a New Graph Regularization.	J. Comput. Biol.	2023	DBLP DOI BibTeX RDF
10	Jamie J. Alnasir, Hugh P. Shanahan	Intra-Exon Motif Correlations as a Proxy Measure for Mean Per-Tile Sequence Quality Data in RNA-Seq.	J. Comput. Biol.	2023	DBLP DOI BibTeX RDF
10	Rajashree Chaurasia, Udayan Ghose	Human DNA/RNA motif mining using deep-learning methods: a scoping review.	Netw. Model. Anal. Health Informatics Bioinform.	2023	DBLP DOI BibTeX RDF
10	Yanay Rosen, Yusuf Roohani, Maria Brbic, Kyle Swanson, Ziang Li, Jure Leskovec	Towards Universal Cell Embeddings: Integrating Single-cell RNA-seq Datasets across Species with SATURN.		2023	DOI RDF
10	Jisheng Liang, Zhe Liu, Wenxiang Cai, Yihang Bao, Guan Ning Lin	Transformers-RNP: Predicting the mutation effect on the stability of Protein-RNA complex with deep learning-based model.	ICBBS	2023	DBLP DOI BibTeX RDF
10	Pallabi Patowary, Dhruba K. Bhattacharyya, Pankaj Barah	Identification of Potential Prognostic Biomarkers for ESCC Using Single-Cell RNA Sequencing Data Analysis.	PReMI	2023	DBLP DOI BibTeX RDF
10	Vivek Rajendran, Harishchander Anandaram, S. Sachin Kumar, K. P. Soman, S. Dhivya	A Comparative Analysis of Machine Learning and Deep Learning Approaches for Circular RNA Classification.	IC3I	2023	DBLP DOI BibTeX RDF
10	Keren Isaev, David A. Knowles	Investigating RNA splicing as a source of cellular diversity using a binomial mixture model.	MLCB	2023	DBLP BibTeX RDF
10	Hui Li, Miaomiao Sun, Kuisheng Chen, Zhenfeng Zhu	Disentangled Multi-factor Graph Neural Network for Non-coding RNA-Drug Resistance Association Prediction.	KSEM (2)	2023	DBLP DOI BibTeX RDF
10	Debasmita Saha, Vaibhav Dhyani, Lopamudra Giri	In vitro laser scanning confocal microscopy and unsupervised segmentation: Quantification of cytosolic calcium and RNA distribution in hypoxic neurons.	EMBC	2023	DBLP DOI BibTeX RDF
10	Maziyar Baranpouyan, Hossein Mohammadi	HDSCC: A robust clustering approach for Single Cell RNA-seq data using Hyperdimensional Encoding.	EMBC	2023	DBLP DOI BibTeX RDF
10	Fei Deng, Yi Li, Rui Sang, Chengchen Zhang, Tim Hall, Danting Yang, Ewa M. Goldys	RNA reporter based CRISPR/Cas12a biosensing platform for sensitive detection of circulating tumor DNA.	EMBC	2023	DBLP DOI BibTeX RDF
10	Orestis D. Papagiannopoulos, Konstantina Kourou, Costas Papaloukas, Georgia S. Karanasiou, Harmen J. G. van de Werken, Yvonne M. Mueller, Peter D. Katsikis, Daniel Herrero-Saboya, Dimitrios I. Fotiadis	Classification of Inflammation of Unknown Origin patients based on RNA-seq and SomaScan data.	EMBC	2023	DBLP DOI BibTeX RDF
10	Olivia Jeanne, Carolina Del Real Mata, Tamer AbdElFatah, Mahsa Jalali, Haleema Khan, Sara Mahshid	Support Vector Machine for Color Classification of RNA.	WiMob	2023	DBLP DOI BibTeX RDF
10	Yatish Jain, Fathima Afra Mohamed Izzath, Laurence O. W. Wilson, Denis C. Bauer	Data Visualization of CRISPR-Cas9 Guide RNA Design Tools.	MedInfo	2023	DBLP DOI BibTeX RDF
10	Andrea Bianchi, Antinisca Di Marco, Cristina Pellegrini	Comparing HISAT and STAR-based pipelines for RNA-Seq Data Analysis: a real experience.	CBMS	2023	DBLP DOI BibTeX RDF
10	Krishnendu Ghosh, Julia Goldman	Formal Analysis of Rewriting System Representing RNA Folding.	BIOINFORMATICS	2023	DBLP DOI BibTeX RDF
10	Amos Bardea	Pattern Genomic Probes Inside Capillary Tubes by Magneto Lithography Method Producing Parallel Detection of DNA and RNA.	BIODEVICES	2023	DBLP DOI BibTeX RDF
10	Matthew L. Sample, Michael Matthies, Petr Sulc	Coarse-Grained Simulations Of Dna And Rna Systems With Oxdna And Oxrna Models: Tutorial.	WSC	2023	DBLP DOI BibTeX RDF
10	Hua Zheng, Wei Xie, Chunsheng Fang, Wandi Xu, Paul C. Whitford, Ailun Wang	Structure-Function Dynamics Hybrid Modeling: RNA Degradation.	WSC	2023	DBLP DOI BibTeX RDF
10	Hikari Okada, Riei Tsurumi, Miu Awaki, Shuichi Kaneko	Identifying New Physiological Functions of Peretinoin from RNA Transcriptome Analysis.	SoMeT	2023	DBLP DOI BibTeX RDF
10	Evarista Onokpasa, Sebastian Wild, Prudence W. H. Wong	RNA secondary structures: from ab initio prediction to better compression, and back.	DCC	2023	DBLP DOI BibTeX RDF
10	Yuyao Zhai, Liang Chen, Minghua Deng	Generalized Cell Type Annotation and Discovery for Single-Cell RNA-Seq Data.	AAAI	2023	DBLP DOI BibTeX RDF
10	Nairouz Mrabah, Mohamed Mahmoud Amar, Mohamed Bouguessa, Abdoulaye Baniré Diallo	Exploring the Interaction between Local and Global Latent Configurations for Clustering Single-Cell RNA-Seq: A Unified Perspective.	AAAI	2023	DBLP DOI BibTeX RDF
10	Zhihua Du, Xing Zhong, Min Fang, Jianqiang Li 0001	GeneSpider: Inferring Gene Regulation Relationships Through Graph Neural Network from Single-Cell RNA Sequence Data.	ICIC (3)	2023	DBLP DOI BibTeX RDF
10	Xiao Wang, Pengfei Li, Lijun Han, Rong Wang	A Stacking-Based Ensemble Learning Predictor Combined with Particle Swarm Optimizer for Identifying RNA Pseudouridine Sites.	ICIC (3)	2023	DBLP DOI BibTeX RDF
10	Yang Liu, Feng Li, Junliang Shang, Daohui Ge, Qianqian Ren, Shengjun Li	Spectral Clustering of Single-Cell RNA-Sequencing Data by Multiple Feature Sets Affinity.	ICIC (3)	2023	DBLP DOI BibTeX RDF
10	Tianxu Wang, Yue Fan, Xiuli Ma	Attention Based Models for Cell Type Classification on Single-Cell RNA-Seq Data.	ECAI	2023	DBLP DOI BibTeX RDF
10	Emanuele Cavalleri, Sara Bonfitto, Alberto Cabri, Jessica Gliozzo, Paolo Perlasca, Mauricio Soto Gomez, Gabriella Trucco, Elena Casiraghi, Giorgio Valentini, Marco Mesiti	Towards the Construction of an RNA-centered Knowledge Graph.	SEBD	2023	DBLP BibTeX RDF
10	Jason Huajue Yang, Eena Cheng	Heterogeneity Analysis of Glioblastoma Tumor Cell Population Based on Single-Cell Rna Sequencing Data Analysis.	ICBBB	2023	DBLP DOI BibTeX RDF
10	Dake Chen, Yuke Zhang, Souvik Kundu 0002, Chenghao Li, Peter A. Beerel	RNA-ViT: Reduced-Dimension Approximate Normalized Attention Vision Transformers for Latency Efficient Private Inference.	ICCAD	2023	DBLP DOI BibTeX RDF
10	Sarah von Löhneysen, Thomas Spicher, Yuliia Varenyk, Hua-Ting Yao, Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler	Phylogenetic Information as Soft Constraints in RNA Secondary Structure Prediction.	ISBRA	2023	DBLP DOI BibTeX RDF
10	Shuo Xu, Liping Kang, Xingyu Bi, Xiaohui Wu	Integrative Analysis of Gene Expression and Alternative Polyadenylation from Single-Cell RNA-seq Data.	ISBRA	2023	DBLP DOI BibTeX RDF