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Venues (Conferences, Journals, ...)
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GrowBag graphs for keyword ? (Num. hits/coverage)
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Results
Found 5429 publication records. Showing 5428 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
10 | Brendan O'Fallon, Jacob Durtschi, Ana Kellogg, Tracey Lewis, Devin Close, Hunter Best |
Algorithmic improvements for discovery of germline copy number variants in next-generation sequencing data. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Lindsay V. Clark, Wittney Mays, Alexander E. Lipka, Erik J. Sacks |
A population-level statistic for assessing Mendelian behavior of genotyping-by-sequencing data from highly duplicated genomes. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Jin-Ok Lee, Jiyon Chu, Gyuyeon Jang, Minho Lee 0002, Yeun-Jun Chung |
tReasure: R-based GUI package analyzing tRNA expression profiles from small RNA sequencing data. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Xuemin Dong, Shanshan Dong, Shengkai Pan, Xiangjiang Zhan |
RNA-combine: a toolkit for comprehensive analyses on transcriptome data from different sequencing platforms. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Sanna Abrahamsson, Frida Eiengård, Anna Rohlin, Marcela Dávila López |
PΨFinder: a practical tool for the identification and visualization of novel pseudogenes in DNA sequencing data. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Kyle Fletcher, Rongkui Han, Diederik Smilde, Richard Michelmore |
Variance of allele balance calculated from low coverage sequencing data infers departure from a diploid state. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Vy Nguyen, Johannes Griss |
scAnnotatR: framework to accurately classify cell types in single-cell RNA-sequencing data. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Josip Rudar, Teresita M. Porter, Michael Wright, Geoffrey Brian Golding, Mehrdad Hajibabaei |
LANDMark: an ensemble approach to the supervised selection of biomarkers in high-throughput sequencing data. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Harry Bowles, Renata Kabiljo, Ahmad Al Khleifat, Ashley Jones, John P. Quinn, Richard J. B. Dobson, Chad M. Swanson, Ammar Al-Chalabi, Alfredo Iacoangeli |
An assessment of bioinformatics tools for the detection of human endogenous retroviral insertions in short-read genome sequencing data. |
Frontiers Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Vivek Ruhela, Anubha Gupta, K. Sriram, Gaurav Ahuja, Gurvinder Kaur, Ritu Gupta |
A Unified Computational Framework for a Robust, Reliable, and Reproducible Identification of Novel miRNAs From the RNA Sequencing Data. |
Frontiers Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Grigorii Sukhorukov, Maryam Khalili, Olivier Gascuel, Thierry Candresse, Armelle Marais-Colombel, Macha Nikolski |
VirHunter: A Deep Learning-Based Method for Detection of Novel RNA Viruses in Plant Sequencing Data. |
Frontiers Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Robert A. Player, Angeline Aguinaldo, Brian B. Merritt, Lisa N. Maszkiewicz, Oluwaferanmi E. Adeyemo, Ellen R. Forsyth, Kathleen J. Verratti, Brant W. Chee, Sarah L. Grady, Christopher E. Bradburne |
The META tool optimizes metagenomic analyses across sequencing platforms and classifiers. |
Frontiers Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Gerald Young |
Activation-Inhibition Coordination in Neuron, Brain, and Behavior Sequencing/Organization: Implications for Laterality and Lateralization. |
Symmetry |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Anthony M. Cirrincione, Cassandra A. Reimonn, Benjamin J. Harrison, Sandra Rieger |
Longitudinal RNA Sequencing of Skin and DRG Neurons in Mice with Paclitaxel-Induced Peripheral Neuropathy. |
Data |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Hicham Touzani, Nicolas Séguy, Hicham Hadj-Abdelkader, Raúl Suárez, Jan Rosell, Leopold Palomo-Avellaneda, Samia Bouchafa |
Efficient Industrial Solution for Robotic Task Sequencing Problem With Mutual Collision Avoidance & Cycle Time Optimization. |
IEEE Robotics Autom. Lett. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Yingjie Yu, Xiaochun Lu, Tao Zhao, Minjiao Cheng, Lin Liu, Wenchao Wei |
Correction: Heuristic approaches for the car sequencing problems with block batches. |
EURASIP J. Wirel. Commun. Netw. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Yingjie Yu, Xiaochun Lu, Tao Zhao, Minjiao Cheng, Lin Liu, Wenchao Wei |
Heuristic approaches for the car sequencing problems with block batches. |
EURASIP J. Wirel. Commun. Netw. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Chang Li, Kevin Ma, Nicole Xu, Chenjian Fu, Andrew He, Xiaoming Liu, Yongsheng Bai |
SNPAAMapper-Python: A highly efficient genome-wide SNP variant analysis pipeline for Next-Generation Sequencing data. |
Frontiers Artif. Intell. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Laio Oriel Seman, Luiz Alberto Koehler, Eduardo Camponogara, Lucas Zimmermann |
Generalized Auto-Sequencing Bus Headway Control Formulation. |
IEEE Trans. Intell. Transp. Syst. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Saurabh Kalikar, Chirag Jain, Md. Vasimuddin, Sanchit Misra |
Accelerating minimap2 for long-read sequencing applications on modern CPUs. |
Nat. Comput. Sci. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Can Kizilkale, Farid Rashidi Mehrabadi, Erfan Sadeqi Azer, Eva Pérez-Guijarro, Kerrie Marie, Maxwell P. Lee, Chi-Ping Day, Glenn Merlino, Funda Ergün, Aydin Buluç, Süleyman Cenk Sahinalp, Salem Malikic |
Fast intratumor heterogeneity inference from single-cell sequencing data. |
Nat. Comput. Sci. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Chiu-Hung Chen, Fu-I Chou, Jyh-Horng Chou |
Optimization of Robotic Task Sequencing Problems by Crowding Evolutionary Algorithms. |
IEEE Trans. Syst. Man Cybern. Syst. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Shuangquan Zhang, Anjun Ma, Jing Zhao, Dong Xu 0002, Qin Ma 0003, Yan Wang 0028 |
Assessing deep learning methods in cis-regulatory motif finding based on genomic sequencing data. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Yunhee Jeong, Lisa Barros de Andrade e Sousa, Dominik Thalmeier, Reka Toth, Marlene Ganslmeier, Kersten Breuer, Christoph Plass, Pavlo Lutsik |
Systematic evaluation of cell-type deconvolution pipelines for sequencing-based bulk DNA methylomes. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Artem Danilevsky, Avital Luba Polsky, Noam Shomron |
Adaptive sequencing using nanopores and deep learning of mitochondrial DNA. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Hang Cheng, Yuhong Sun, Qing Yang, Minggui Deng, Zhijian Yu, Gang Zhu, Jiuxin Qu, Lei Liu, Liang Yang, Yu Xia |
A rapid bacterial pathogen and antimicrobial resistance diagnosis workflow using Oxford nanopore adaptive sequencing method. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Yingxi Yang, Quan Sun, Le Huang, Jai G. Broome, Adolfo Correa, Alexander Reiner, Laura M. Raffield, Yuchen Yang, Yun Li |
eSCAN: scan regulatory regions for aggregate association testing using whole-genome sequencing data. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Jingsi Ming, Zhixiang Lin, Jia Zhao, Xiang Wan, Tabula Microcebus Consortium, C. Ezran, S. Liu, Can Yang 0002, Angela Ruohao Wu |
FIRM: Flexible integration of single-cell RNA-sequencing data for large-scale multi-tissue cell atlas datasets. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Tianjiao Zhang, Jie Zhou, Wentao Gao, Yuran Jia, Yanan Wei, Guohua Wang |
Complex genome assembly based on long-read sequencing. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Siqi Bao, Ke Li, Congcong Yan, Zicheng Zhang, Jia Qu, Meng Zhou 0003 |
Deep learning-based advances and applications for single-cell RNA-sequencing data analysis. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Haiyue Wang, Xiaoke Ma |
Learning deep features and topological structure of cells for clustering of scRNA-sequencing data. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Paula J. Gómez-González, Susana G. Campino, Jody Phelan, Taane G. Clark |
Portable sequencing of Mycobacterium tuberculosis for clinical and epidemiological applications. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Hui-Sheng Li, Le Ou-Yang, Yuan Zhu, Hong Yan 0001, Xiao-Fei Zhang |
scDEA: differential expression analysis in single-cell RNA-sequencing data via ensemble learning. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Jiahui Ji, Maryam Anwar, Enrico Petretto, Costanza Emanueli, Prashant Kumar Srivastava |
PPMS: A framework to Profile Primary MicroRNAs from Single-cell RNA-sequencing datasets. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Simone Marini, Rodrigo A. Mora, Christina Boucher, Noelle Robertson Noyes, Mattia Prosperi |
Towards routine employment of computational tools for antimicrobial resistance determination via high-throughput sequencing. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Zhi Ruan, Shengmei Zou, Zeyu Wang, Luhan Zhang, Hangfei Chen, Yuye Wu, Huiqiong Jia, Mohamed S. Draz, Ye Feng |
Toward accurate diagnosis and surveillance of bacterial infections using enhanced strain-level metagenomic next-generation sequencing of infected body fluids. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Shiva Dahal-Koirala, Gabriel Balaban, Ralf Stefan Neumann, Lonneke Scheffer, Knut Erik Aslaksen Lundin, Victor Greiff, Ludvig Magne Sollid, Shuo-Wang Qiao, Geir Kjetil Sandve |
TCRpower: quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Umm-Kulthum Ismail Umlai, Dhinoth Kumar Bangarusamy, Xavier Estivill, Puthen Veettil Jithesh |
Genome sequencing data analysis for rare disease gene discovery. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Atlas M. Sardoo, Shaoqiang Zhang, Thomas N. Ferraro, Thomas M. Keck, Yong Chen |
Decoding brain memory formation by single-cell RNA sequencing. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Shih-Kai Chu, Shilin Zhao, Yu Shyr, Qi Liu 0024 |
Comprehensive evaluation of noise reduction methods for single-cell RNA sequencing data. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Dietmar Fernández-Orth, Manuel Rueda, Babita Singh, Mauricio Moldes, Aina Jene, Marta Ferri, Claudia Vasallo, Lauren A. Fromont, Arcadi Navarro, Jordi Rambla |
A quality control portal for sequencing data deposited at the European genome-phenome archive. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Jiawei Zou, Fulan Deng, Miaochen Wang, Zhen Zhang, Zheqi Liu, Xiaobin Zhang, Rong Hua, Ke Chen, Xin Zou, Jie Hao |
scCODE: an R package for data-specific differentially expressed gene detection on single-cell RNA-sequencing data. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Sander N. Goossens, Tim H. Heupink, Elise De Vos, Anzaan Dippenaar, Margaretha De Vos, Rob Warren 0001, Annelies Van Rie |
Detection of minor variants in Mycobacterium tuberculosis whole genome sequencing data. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Ruibo Zhang, Souparno Ghosh, Ranadip Pal |
Predicting binding affinities of emerging variants of SARS-CoV-2 using spike protein sequencing data: observations, caveats and recommendations. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Jiacheng Wang, Quan Zou, Chen Lin |
A comparison of deep learning-based pre-processing and clustering approaches for single-cell RNA sequencing data. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Mengfei Liu, Linlin Hao, Sien Yang, Xiaohui Wu |
PolyAtailor: measuring poly(A) tail length from short-read and long-read sequencing data. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Xue Zhang, Chen-Guang Liu, Shi-Hui Yang, Xia Wang, Feng-Wu Bai, Zhuo Wang |
Benchmarking of long-read sequencing, assemblers and polishers for yeast genome. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Ho-Jin Gwak, Mina Rho |
ViBE: a hierarchical BERT model to identify eukaryotic viruses using metagenome sequencing data. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Tingting Yang, Mingyu Gan, Qingyun Liu, Wenying Liang, Qiqin Tang, Geyang Luo, Tianyu Zuo, Yongchao Guo, Chuangyue Hong, Qibing Li, Weiguo Tan, Qian Gao |
SAM-TB: a whole genome sequencing data analysis website for detection of Mycobacterium tuberculosis drug resistance and transmission. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Abhijeet Singh, Anna Schnürer |
AcetoBase Version 2: a database update and re-analysis of formyltetrahydrofolate synthetase amplicon sequencing data from anaerobic digesters. |
Database J. Biol. Databases Curation |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Aditya Narayan Ravi, Alireza Vahid, Ilan Shomorony |
Coded Shotgun Sequencing. |
IEEE J. Sel. Areas Inf. Theory |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Zoe Weiss, Saurja Dasgupta |
REVERSE: a user-friendly web server for analyzing next-generation sequencing data from in vitro selection/evolution experiments. |
Nucleic Acids Res. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Fayrouz Hammal, Pierre de langen, Aurélie Bergon, Fabrice Lopez, Benoît Ballester |
ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments. |
Nucleic Acids Res. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Youlong Lv, Jie Zhang 0041, Liling Zuo |
Genetic regulatory network-based optimisation of master production scheduling and mixed-model sequencing in assembly lines. |
Int. J. Bio Inspired Comput. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Michael Hall |
Rasusa: Randomly subsample sequencing reads to a specified coverage. |
J. Open Source Softw. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Véronique Legrand, Thomas Kergrohen, Nicolas Joly, Alexis Criscuolo |
ROCK: digital normalization of whole genome sequencing data. |
J. Open Source Softw. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Zheng Li, Chang Tang, Xiao Zheng, Zhenglai Li, Wei Zhang 0049, Lijuan Cao |
Unified K-means coupled self-representation and neighborhood kernel learning for clustering single-cell RNA-sequencing data. |
Neurocomputing |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Zhengkai Li, Hao Sun, Xinghu Yu, Weichao Sun |
Heuristic sequencing hopfield neural network for pick-and-place location routing in multi-functional placers. |
Neurocomputing |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Moritz Ruf, Jean-François Cordeau, Emma Frejinger |
The load planning and sequencing problem for double-stack trains. |
J. Rail Transp. Plan. Manag. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Yifu Li, Tinglong Dai, Xiangtong Qi |
A Theory of Interior Peaks: Activity Sequencing and Selection for Service Design. |
Manuf. Serv. Oper. Manag. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Bhawani Sankar Biswal, Anjali Mohapatra, Swati Vipsita |
Ensemble Neighborhood Search (ENS) for biclustering of gene expression microarray data and single cell RNA sequencing data. |
J. King Saud Univ. Comput. Inf. Sci. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Kun Xie, Kang Liu, Haque A. K. Alvi, Wenyue Ji, Shuzhen Wang, Liang Chang 0003, Xiguo Yuan |
IhybCNV: An intra-hybrid approach for CNV detection from next-generation sequencing data. |
Digit. Signal Process. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Jonathan S. Abebe, Alexander M. Price, Katharina E. Hayer, Ian Mohr, Matthew D. Weitzman, Angus C. Wilson, Daniel P. Depledge |
DRUMMER - rapid detection of RNA modifications through comparative nanopore sequencing. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Marina Murillo-Recio, Ignacio Miguel Martínez de Lejarza Samper, Cristina Tuñí i Domínguez, Lluís Ribas de Pouplana, Adrian Gabriel Torres |
tRNAstudio: facilitating the study of human mature tRNAs from deep sequencing datasets. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Xian F. Mallory, Luay Nakhleh |
SimSCSnTree: a simulator of single-cell DNA sequencing data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Yang Chen 0004, Shue Chen, Elissa P. Lei |
DiffChIPL: a differential peak analysis method for high-throughput sequencing data with biological replicates based on limma. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Hao Zhang, Qixin Chang, Zekun Yin, Xiaoming Xu, Yanjie Wei, Bertil Schmidt, Weiguo Liu |
RabbitV: fast detection of viruses and microorganisms in sequencing data on multi-core architectures. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Lily Zheng, Noushin Niknafs, Laura D. Wood, Rachel Karchin, Robert B. Scharpf |
Estimation of cancer cell fractions and clone trees from multi-region sequencing of tumors. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Zuhal Ozcan, Francis A. San Lucas, Justin W. Wong, Kyle Chang, Konrad H. Stopsack, Jerry Fowler, Yasminka A. Jakubek, Paul Scheet |
Chromosomal imbalances detected via RNA-sequencing in 28 cancers. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Chixiang Chen, Yuk Yee Leung, Matei Ionita, Li-San Wang, Mingyao Li |
Omnibus and robust deconvolution scheme for bulk RNA sequencing data integrating multiple single-cell reference sets and prior biological knowledge. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | José Bonet 0001, Mandi Chen, Marc Dabad, Simon Heath, Abel Gonzalez-Perez, Núria López-Bigas, Jens Lagergren |
DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Marina Ainciburu, Duncan M. Morgan, Erica A. K. Depasquale, J. Christopher Love, Felipe Prósper, Peter van Galen |
WAT3R: recovery of T-cell receptor variable regions from 3′ single-cell RNA-sequencing. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Maximillian G. Marin, Roger Vargas, Michael Harris, Brendan Jeffrey, L. Elaine Epperson, David Durbin, Michael Strong, Max Salfinger, Zamin Iqbal, Irada Akhundova, Sergo Vashakidze, Valeriu Crudu, Alex Rosenthal, Maha R. Farhat |
Benchmarking the empirical accuracy of short-read sequencing across the M. tuberculosis genome. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Mateusz Chilinski, Dariusz Plewczynski |
ConsensuSV - from the whole-genome sequencing data to the complete variant list. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | James M. Ferguson, Hasindu Gamaarachchi, Thanh Nguyen, Alyne Gollon, Stephanie Tong, Chiara Aquilina-Reid, Rachel Bowen-James, Ira W. Deveson |
InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Xin Wei, Ziyi Li, Hongkai Ji, Hao Wu 0003 |
EDClust: an EM-MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Matthew Hayes, Angela Nguyen, Rahib Islam, Caryn Butler, Ethan Tran, Derrick Mullins, Chindo Hicks |
HolistIC: leveraging Hi-C and whole genome shotgun sequencing for double minute chromosome discovery. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Giacomo Baruzzo, Giulia Cesaro, Barbara Di Camillo |
Identify, quantify and characterize cellular communication from single-cell RNA sequencing data with scSeqComm. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Lance D. Hentges, Martin J. Sergeant, Christopher B. Cole, Damien J. Downes, Jim R. Hughes, Stephen Taylor |
LanceOtron: a deep learning peak caller for genome sequencing experiments. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Zhenhua Yu 0002, Fang Du |
AMC: accurate mutation clustering from single-cell DNA sequencing data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Sandra Hui, Rasmus Nielsen |
SCONCE: a method for profiling copy number alterations in cancer evolution using single-cell whole genome sequencing. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Dohyeon Lee, Giltae Song |
FastqCLS: a FASTQ compressor for long-read sequencing via read reordering using a novel scoring model. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Givanna H. Putri, Simon Anders, Paul Theodor Pyl, John E. Pimanda, Fabio Zanini |
Analysing high-throughput sequencing data in Python with HTSeq 2.0. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Piyush Ranjan, Christopher A. Brown, John R. Erb-Downward, Robert P. Dickson |
SNIKT: sequence-independent adapter identification and removal in long-read shotgun sequencing data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Zilong Zhang, Feifei Cui, Wei Su, Lijun Dou, Anqi Xu, Chen Cao, Quan Zou 0001 |
webSCST: an interactive web application for single-cell RNA-sequencing data and spatial transcriptomic data integration. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Chien-Chi Lo, Migun Shakya, Ryan Connor, Karen Davenport, Mark Flynn, Adán Myers y Gutiérrez, Bin Hu, Po-E Li, Elais Player Jackson, Yan Xu, Patrick S. G. Chain |
EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Richard A. Stanton, Nicholas Vlachos, Alison Laufer Halpin |
GAMMA: a tool for the rapid identification, classification and annotation of translated gene matches from sequencing data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Xiaoli Jiao, Hiromi Imamichi, Brad T. Sherman, Rishub Nahar, Robin L. Dewar, H. Clifford Lane, Tomozumi Imamichi, Weizhong Chang |
QuasiSeq: profiling viral quasispecies via self-tuning spectral clustering with PacBio long sequencing reads. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Fei Qin, Xizhi Luo, Feifei Xiao, Guoshuai Cai |
SCRIP: an accurate simulator for single-cell RNA sequencing data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Ke Jin, Bo Li, Hong Yan 0001, Xiao-Fei Zhang |
Imputing dropouts for single-cell RNA sequencing based on multi-objective optimization. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Lu Pan, Huy Q. Dinh, Yudi Pawitan, Trung-Nghia Vu |
Isoform-level quantification for single-cell RNA sequencing. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Justine Labory, Gwendal Le Bideau, David Pratella, Jean-Elisée Yao, Samira Ait-El-Mkadem Saadi, Sylvie Bannwarth, Loubna El-Hami, Véronique Paquis-Flucklinger, Silvia Bottini |
ABEILLE: a novel method for ABerrant Expression Identification empLoying machine LEarning from RNA-sequencing data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Yunxiao Ren, Trinad Chakraborty, Swapnil Doijad, Linda Falgenhauer, Jane Falgenhauer, Alexander Goesmann, Anne-Christin Hauschild, Oliver Schwengers, Dominik Heider |
Prediction of antimicrobial resistance based on whole-genome sequencing and machine learning. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Ilya Vainberg-Slutskin, Noga Kowalsman, Yael Silberberg, Tal Cohen, Jenia Gold, Edith Kario, Iddo Weiner, Inbar Gahali-Sass, Sharon Kredo-Russo, Naomi B. Zak, Merav Bassan |
Exodus: sequencing-based pipeline for quantification of pooled variants. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
10 | Guangyi Chen, Zhi-Ping Liu |
Graph attention network for link prediction of gene regulations from single-cell RNA-sequencing data. |
Bioinform. |
2022 |
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10 | Emira Cherif, Fatou Seck Thiam, Mohammad Salma, Georgina Rivera-Ingraham, Fabienne Justy, Theo Deremarque, Damien Breugnot, Jean-Claude Doudou, Rodolphe E. Gozlan, Marine Combe |
ONTdeCIPHER: an amplicon-based nanopore sequencing pipeline for tracking pathogen variants. |
Bioinform. |
2022 |
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10 | Hana Rozhonová, Daniel Danciu, Stefan Stark, Gunnar Rätsch, André Kahles, Kjong-Van Lehmann |
SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing. |
Bioinform. |
2022 |
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10 | Martin Hunt, Jeremy Swann, Bede Constantinides, Philip Fowler, Zamin Iqbal |
ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads. |
Bioinform. |
2022 |
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10 | Yupei You, Michael B. Clark, Heejung Shim |
NanoSplicer: accurate identification of splice junctions using Oxford Nanopore sequencing. |
Bioinform. |
2022 |
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10 | Valentín Valero, Gregorio Díaz 0001, Juan Boubeta-Puig, Hermenegilda Macià, Enrique Brazález |
A Compositional Approach for Complex Event Pattern Modeling and Transformation to Colored Petri Nets with Black Sequencing Transitions. |
IEEE Trans. Software Eng. |
2022 |
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