Search results for "protein"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
23	Fedja Hadzic, Tharam S. Dillon, Amandeep S. Sidhu, Elizabeth Chang 0001, Henry Tan	Mining Substructures in Protein Data.	ICDM Workshops	2006	DBLP DOI BibTeX RDF
23	Keith Marsolo, Srinivasan Parthasarathy 0001	On the Use of Structure and Sequence-Based Features for Protein Classification and Retrieval.	ICDM	2006	DBLP DOI BibTeX RDF
23	Hongbiao Liu, Juan Liu	Clustering Protein Interaction Data Through Chaotic Genetic Algorithm.	SEAL	2006	DBLP DOI BibTeX RDF
23	Balaji S. Srinivasan, Antal F. Novak, Jason Flannick, Serafim Batzoglou, Harley H. McAdams	Integrated Protein Interaction Networks for 11 Microbes.	RECOMB	2006	DBLP DOI BibTeX RDF
23	Mehmet Koyutürk, Ananth Grama, Wojciech Szpankowski	Assessing Significance of Connectivity and Conservation in Protein Interaction Networks.	RECOMB	2006	DBLP DOI BibTeX RDF
23	Tsung-Han Chiang 0001, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe	Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation.	RECOMB	2006	DBLP DOI BibTeX RDF
23	Yong Wang 0001, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen	Automatic Classification of Protein Structures Based on Convex Hull Representation by Integrated Neural Network.	TAMC	2006	DBLP DOI BibTeX RDF
23	Djamel Bouchaffra, Jun Tan	Protein Fold Recognition using a Structural Hidden Markov Model.	ICPR (3)	2006	DBLP DOI BibTeX RDF
23	Yang Yang 0030, Bao-Liang Lu	Prediction of Protein Subcellular Multi-locations with a Min-Max Modular Support Vector Machine.	ISNN (2)	2006	DBLP DOI BibTeX RDF
23	Seung-Yeon Kim, Julian Lee	Double Optimization for Design of Protein Energy Function.	ICIC (3)	2006	DBLP DOI BibTeX RDF
23	Qing-Bin Gao, Zheng-Zhi Wang	Feature Subset Selection for Protein Subcellular Localization Prediction.	ICIC (3)	2006	DBLP DOI BibTeX RDF
23	Tongliang Zhang, Yongsheng Ding, Shihuang Shao	Protein Subcellular Location Prediction Based on Pseudo Amino Acid Composition and Immune Genetic Algorithm.	ICIC (3)	2006	DBLP DOI BibTeX RDF
23	Kyu Cheol Cho, Da Hye Park, Yong Beom Ma, Jong Sik Lee	Optimal Clustering-Based ART1 Classification in Bioinformatics: G-Protein Coupled Receptors Classification.	ICNC (1)	2006	DBLP DOI BibTeX RDF
23	Jim Davies, Janice I. Glasgow, Tony Kuo	Protein Structure Prediction with Visuospatial Analogy.	Spatial Cognition	2006	DBLP DOI BibTeX RDF
23	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001	Unification of Protein Data and Knowledge Sources.	KES (1)	2006	DBLP DOI BibTeX RDF
23	Majid Beigi, Andreas Zell	A Novel Method for Classifying Subfamilies and Sub-subfamilies of G-Protein Coupled Receptors.	ISBMDA	2006	DBLP DOI BibTeX RDF
23	Jingyi Yang, Jitender S. Deogun	G Protein-Coupled Receptor Classification at the Subfamily Level with Probabilistic Suffix Tree.	CIBCB	2006	DBLP DOI BibTeX RDF
23	Brendan Mumey, Nathaniel Ohler, Thomas Angel, Algirdas J. Jesaitis, Edward A. Dratz	Filtering Epitope Alignments to Improve Protein Surface Prediction.	ISPA Workshops	2006	DBLP DOI BibTeX RDF
23	Christopher H. Bryant, Daniel Fredouille, Alex Wilson, Channa K. Jayawickreme, Steven Jupe, Simon Topp	Pertinent Background Knowledge for Learning Protein Grammars.	ECML	2006	DBLP DOI BibTeX RDF
23	Hang Chen, Fei Gu, Zhengge Huang	A Compound Method of Protein Secondary Structure Prediction and Its Implementation.	IMSCCS (1)	2006	DBLP DOI BibTeX RDF
23	Zhong-Hui Duan, Brent Hughes, Lothar Reichel, Ting Shi	The Relationship between Protein Sequences and their Gene Ontology Functions.	IMSCCS (1)	2006	DBLP DOI BibTeX RDF
23	Hui-Huang Hsu, Chao-Hsun Yang, Cheng-Wei Hsieh, Chien-Chung Cheng	An Integrated Information System for Protein Identification.	AINA (1)	2006	DBLP DOI BibTeX RDF
23	Suely Oliveira, S. C. Seok	Triangular Clique Based Multilevel Approaches to Identify Protein Functional Modules.	VECPAR	2006	DBLP DOI BibTeX RDF
23	Jung-Hsien Chiang, Hsu-Chun Yu	Literature Extraction of Protein Functions Using Sentence Pattern Mining.	IEEE Trans. Knowl. Data Eng.	2005	DBLP DOI BibTeX RDF
23	Christiaan V. Henkel, Reno S. Bladergroen, Crina I. A. Balog, André M. Deelder, Tom Head, Grzegorz Rozenberg, Herman P. Spaink	Protein output for DNA computing.	Nat. Comput.	2005	DBLP DOI BibTeX RDF	plasmid computing, DNA computing, proteomics
23	Wolfgang P. Lehrach, Dirk Husmeier, Christopher K. I. Williams	Probabilistic in Silico Prediction of Protein-Peptide Interactions.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
23	Minkoo Seo, Sanghyun Park 0003, Jung-Im Won	CSI: Clustered Segment Indexing for Efficient Approximate Searching on the Secondary Structure of Protein Sequences.	ISMIS	2005	DBLP DOI BibTeX RDF	Secondary structure of proteins, Indexing method, Approximate searching
23	Mehmet M. Dalkilic, Arijit Sengupta	Design and evaluation of CATPA: curation and alignment tool for protein analysis.	SAC	2005	DBLP DOI BibTeX RDF	genomic information retrieval, bioinformatics, alignment, genomics, database modeling
23	Anna Gambin, Damian Wójtowicz	Almost FPRAS for Lattice Models of Protein Folding.	WEA	2005	DBLP DOI BibTeX RDF
23	Bo-Fu Liu, Hung-Ming Chen, Hui-Ling Huang, Shiow-Fen Hwang, Shinn-Ying Ho	Flexible protein-ligand docking using particle swarm optimization.	Congress on Evolutionary Computation	2005	DBLP DOI BibTeX RDF
23	Scott F. Smith 0002	Searching for protein classification features.	Congress on Evolutionary Computation	2005	DBLP DOI BibTeX RDF
23	Janine Imada, Paul Chapman, Stuart M. Rothstein	Recognizing Patterns in High-Dimensional Data: Automated Histogram Filtering for Protein Structure Elucidation.	HPCS	2005	DBLP DOI BibTeX RDF
23	Hasan Ogul, Ü. Erkan Mumcuoglu	Protein Solvent Accessibility Prediction Using Support Vector Machines and Sequence Conservations.	TAINN	2005	DBLP DOI BibTeX RDF
23	S. Raman 0002, Bahram Parvin, Christopher Maxwell, Mary Helen Barcellos-Hoff	Geometric Approach to Segmentation and Protein Localization in Cell Cultured Assays.	ISVC	2005	DBLP DOI BibTeX RDF
23	Leon French, Alioune Ngom, Luis Rueda 0001	Fast Protein Superfamily Classification Using Principal Component Null Space Analysis.	Canadian AI	2005	DBLP DOI BibTeX RDF
23	Zhen-Hui Zhang, Zhenghua Wang, Yong-Xian Wang	A New Encoding Scheme to Improve the Performance of Protein Structural Class Prediction.	ICNC (2)	2005	DBLP DOI BibTeX RDF
23	Lorenzo Baldacci, Matteo Golfarelli	Mining Complex Patterns from Protein Surfaces.	DEXA Workshops	2005	DBLP DOI BibTeX RDF
23	Wei Zhong, Gulsah Altun, Robert W. Harrison, Phang C. Tai, Yi Pan 0001	Mining Protein Sequence Motifs Representing Common 3D Structures.	CSB Workshops	2005	DBLP DOI BibTeX RDF
23	Feng Gao 0016, Mohammed Javeed Zaki	PSIST: Indexing Protein Structures Using Suffix Trees.	CSB	2005	DBLP DOI BibTeX RDF
23	Zhenglin Hou, Cunxi Wang, Odd-Arne Olsen	TPR Packing Analysis and 3D Modeling for the HAT Domain of Human Crooked Neck Protein.	CSB Workshops	2005	DBLP DOI BibTeX RDF
23	Jae-Hong Eom, Byoung-Tak Zhang	Extraction of Gene/Protein Interaction from Text Documents with Relation Kernel.	KES (2)	2005	DBLP DOI BibTeX RDF
23	Doosung Hwang, Ung-Mo Kim, Jaehun Choi, Jeho Park, Jang-Hee Yoo	Predictive Model for Protein Function Using Modular Neural Approach.	ICAPR (1)	2005	DBLP DOI BibTeX RDF
23	Constantin Bannert, Jens Stoye	Protein Annotation by Secondary Structure Based Alignments (PASSTA).	CompLife	2005	DBLP DOI BibTeX RDF
23	Evgeny B. Krissinel, Kim Henrick	Detection of Protein Assemblies in Crystals.	CompLife	2005	DBLP DOI BibTeX RDF
23	Paulo J. Azevedo, Cândida G. Silva, R. J. Rodrigues, Nuno Loureiro-Ferreira, Rui M. M. Brito	Detection of Hydrophobic Clusters in Molecular Dynamics Protein Unfolding Simulations Using Association Rules.	ISBMDA	2005	DBLP DOI BibTeX RDF
23	Niranjan P. Bidargaddi, Madhu Chetty, Joarder Kamruzzaman	Evaluation of Fuzzy Measures in Profile Hidden Markov Models for Protein Sequences.	ISBMDA	2005	DBLP DOI BibTeX RDF
23	Deok-Soo Kim, Cheol-Hyung Cho, Youngsong Cho, Chung In Won, Donguk Kim 0001	Pocket Recognition on a Protein Using Euclidean Voronoi Diagram of Atoms.	ICCSA (1)	2005	DBLP DOI BibTeX RDF
23	Jieyue He, Hae-Jin Hu, Robert W. Harrison, Phang C. Tai, Yisheng Dong, Yi Pan 0001	Understanding Protein Structure Prediction Using SVM_DT.	ISPA Workshops	2005	DBLP DOI BibTeX RDF
23	Sotiris Diplaris, Grigorios Tsoumakas, Pericles A. Mitkas, Ioannis P. Vlahavas	Protein Classification with Multiple Algorithms.	Panhellenic Conference on Informatics	2005	DBLP DOI BibTeX RDF
23	Eugene Ie, Jason Weston, William Stafford Noble, Christina S. Leslie	Multi-class protein fold recognition using adaptive codes.	ICML	2005	DBLP DOI BibTeX RDF
23	Rafiqul Islam, Alioune Ngom	Parallel evolution strategy for protein threading.	SCCC	2005	DBLP DOI BibTeX RDF
23	Mitsunori Takano, Junichi Higo, Hironori K. Nakamura, Masaki Sasai	On the model granularity to simulate protein dynamics: A biological physics view on biomolecular computing.	Nat. Comput.	2004	DBLP DOI BibTeX RDF	coarse-grained model, collective motion, essential dynamics, simulation, robustness, structure, function
23	Melanie Hilario, Alex L. Mitchell, Jee-Hyub Kim, Paul Bradley, Terri K. Attwood	Classifying Protein Fingerprints.	PKDD	2004	DBLP DOI BibTeX RDF
23	In-Yee Lee, Ta-tsen Soong, Jan-Ming Ho, Ming-Jing Hwang	Derivation and Analysis of Fragment Libraries of Protein Structures.	BIBE	2004	DBLP DOI BibTeX RDF
23	Piotr Berman, Bhaskar DasGupta, Dhruv Mubayi, Robert H. Sloan, György Turán, Yi Zhang 0002	The Protein Sequence Design Problem in Canonical Model on 2D and 3D Lattices.	CPM	2004	DBLP DOI BibTeX RDF
23	Sudha Ram, Wei Wei	Modeling the Semantics of 3D Protein Structures.	ER	2004	DBLP DOI BibTeX RDF
23	Anish Alex, Jonathan Rose, Ruth Isserlin-Weinberger, Christopher W. V. Hogue	Hardware Accelerated Novel Protein Identification.	FPL	2004	DBLP DOI BibTeX RDF
23	Yonghua Han, Bin Ma 0002, Kaizhong Zhang	An Automata Approach to Match Gapped Sequence Tags Against Protein Database.	CIAA	2004	DBLP DOI BibTeX RDF
23	Takenao Ohkawa, Yusuke Nonomura, Kenji Inoue	Logical Cluster Construction in a Grid Environment for Similar Protein Retrieval.	SAINT Workshops	2004	DBLP DOI BibTeX RDF
23	Zerrin Isik, Berrin A. Yanikoglu, Osman Ugur Sezerman	Protein Structural Class Determination Using Support Vector Machines.	ISCIS	2004	DBLP DOI BibTeX RDF
23	Peter M. Kasson, Johannes B. Huppa, Mark M. Davis, Axel T. Brünger	Quantitative Analysis of Membrane Protein Localization and Signaling.	CSB	2004	DBLP DOI BibTeX RDF
23	Jaspreet Singh Sodhi, Liam J. McGuffin, Kevin Bryson, Jonathan J. Ward, Lorenz Wernisch, David T. Jones	Automatic Prediction of Functional Site Regions in Low-Resolution Protein Structures.	CSB	2004	DBLP DOI BibTeX RDF
23	Patrik D'haeseleer, George M. Church	Estimating and Improving Protein Interaction Error Rates.	CSB	2004	DBLP DOI BibTeX RDF
23	Yi-Chung Lo, Yuan-Hsun Wu, Chia-Sheng Huang, Hong-Wen Liu, Chi-Hung Lin, Jengping Lin, Wensyang Hsu, Chaoen Wang	Sub-Microfabrication of Protein Micropatterns for Cell Biology Applications.	ICMENS	2004	DBLP DOI BibTeX RDF
23	Lev Soinov, Alexander Kanapin, Misha Kapushesky	Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation.	WABI	2004	DBLP DOI BibTeX RDF
23	Chin-Teng Lin, Ken-Li Lin, Chih-Hsien Yang, I-Fang Chung, Chuen-Der Huang, Yuh-Shyong Yang	Protein Metal Binding Residue Prediction Based on Neural Networks.	ICONIP	2004	DBLP DOI BibTeX RDF
23	Arthur M. Lesk	Invited: Prediction of protein function.	RECOMB	2003	DBLP DOI BibTeX RDF
23	Richard O. Day, Gary B. Lamont, Ruth Pachter	Protein Structure Prediction by Applying an Evolutionary Algorithm.	IPDPS	2003	DBLP DOI BibTeX RDF
23	Werner G. Krebs, Philip E. Bourne	Statistical and Visual Morph Movie Analysis of Crystallographic Mutant Selection Bias in Protein Mutation Resource Data.	CSB	2003	DBLP DOI BibTeX RDF
23	Weijian Xuan, Stanley J. Watson, Huda Akil, Fan Meng	Identifying Gene and Protein Names from Biological Texts.	CSB	2003	DBLP DOI BibTeX RDF
23	Zhenglin Yang, Guirong Liu	3D Protein Peptide Chain Search Using an Improved Genetic Algorithm.	ICCSA (1)	2003	DBLP DOI BibTeX RDF
23	Makoto Taiji, Tetsu Narumi, Yousuke Ohno, Noriyuki Futatsugi, Atsushi Suenaga, Naoki Takada, Akihiko Konagaya	Protein Explorer: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations.	SC	2003	DBLP DOI BibTeX RDF
23	Konstantinos Blekas, Dimitrios I. Fotiadis, Aristidis Likas	Protein Sequence Classification Using Probabilistic Motifs and Neural Networks.	ICANN	2003	DBLP DOI BibTeX RDF
23	Alessio Ceroni, Paolo Frasconi, Andrea Passerini, Alessandro Vullo	A Combination of Support Vector Machines and Bidirectional Recurrent Neural Networks for Protein Secondary Structure Prediction.	AI*IA	2003	DBLP DOI BibTeX RDF
23	Natalio Krasnogor, B. P. Blackburne, Edmund K. Burke, Jonathan D. Hirst	Multimeme Algorithms for Protein Structure Prediction.	PPSN	2002	DBLP DOI BibTeX RDF
23	Nancy M. Amato, Ken A. Dill, Guang Song	Using motion planning to map protein folding landscapes and analyze folding kinetics of known native structures.	RECOMB	2002	DBLP DOI BibTeX RDF
23	Yu Tao, Thomas R. Ioerger, James C. Sacchettini	Extracting Fractal Features for Analyzing Protein Structure.	ICPR (2)	2002	DBLP DOI BibTeX RDF
23	Jiong Yang 0001, Wei Wang 0010, Yi Xia, Philip S. Yu	Accelerating Approximate Subsequence Search on Large Protein Sequence Databases.	CSB	2002	DBLP DOI BibTeX RDF
23	Alena Shmygelska, Rosalía Aguirre-Hernández, Holger H. Hoos	An Ant Colony Optimization Algorithm for the 2D HP Protein Folding Problem.	Ant Algorithms	2002	DBLP DOI BibTeX RDF
23	Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson	MultiProt - A Multiple Protein Structural Alignment Algorithm.	WABI	2002	DBLP DOI BibTeX RDF
23	Guang Song, Nancy M. Amato	Using motion planning to study protein folding pathways.	RECOMB	2001	DBLP DOI BibTeX RDF
23	Frederic M. Richards	Protein geometry as a function of time.	SCG	2001	DBLP DOI BibTeX RDF
23	Juris Viksna, David R. Gilbert	Pattern Matching and Pattern Discovery Algorithms for Protein Topologies.	WABI	2001	DBLP DOI BibTeX RDF
23	Y. Zenmei Ohkubo, Gordon M. Crippen	Determining contact energy function for continuous state models of globular protein conformations.	RECOMB	2000	DBLP DOI BibTeX RDF
23	Vladimir V. Krepets, Natalya V. Belkina	Prediction of Binding Affinities for Protein-ligand Complexes with Neural Network Models.	Discovery Science	2000	DBLP DOI BibTeX RDF
23	Shankar Subramaniam, David K. Tcheng, K. Hu, Harish Ragavan, Larry A. Rendell	Knowledge Engineering for Protein Structure and Motifs: Design of a Prototype System.	SEKE	1992	DBLP DOI BibTeX RDF
23	Margaret Oakley Dayhoff, Winona C. Barker, R. M. Schwartz, Bruce C. Orcutt, Lois T. Hunt	Data base for protein sequences.	AFIPS National Computer Conference	1976	DBLP DOI BibTeX RDF
23	Peng Zhou 0003, Xiang Chen, Zhicai Shang	Side-chain conformational space analysis (SCSA): A multi conformation-based QSAR approach for modeling and prediction of protein-peptide binding affinities.	J. Comput. Aided Mol. Des.	2009	DBLP DOI BibTeX RDF	Multi-conformation-based quantitative structure-activity relationship, Side-chain conformational space analysis, Rotamer library, Self-consistent mean field theory, Protein-peptide complex, HLA-A*0201-restricted CTL epitope
23	Nicholas Holden, Alex Alves Freitas	Hierarchical classification of protein function with ensembles of rules and particle swarm optimisation.	Soft Comput.	2009	DBLP DOI BibTeX RDF	Hierarchical classification, Particle swarm optimisation, Protein function prediction
23	Chan-seok Jeong, Dongsup Kim	Linear predictive coding representation of correlated mutation for protein sequence alignment.	DTMBIO	2009	DBLP DOI BibTeX RDF	correlated mutation analysis, protein sequence alignment, linear predictive coding
23	Mariana B. Monteiro, Manuela E. Pintado, Francisco X. Malcata, Conrad Bessant, Patrícia R. Moreira	Development of a Workflow for Protein Sequence Analysis Based on the Taverna Workbench Software.	IWANN (2)	2009	DBLP DOI BibTeX RDF	protein sequence analysis, Taverna Workbench®, web services, workflow
23	Pablo Vicente Carrera, Daniel Glez-Peña, Eva Lorenzo Iglesias, Lourdes Borrajo, Reyes Pavón 0001, Rosalía Laza, Carmen M. Redondo Marey	Applying Text Mining to Search for Protein Patterns.	IWANN (2)	2009	DBLP DOI BibTeX RDF	Biological text mining, search for protein patterns, text categorization
23	Juan Frausto Solís, Xavier Soberon-Mainero, Ernesto Liñán-García	MultiQuenching Annealing Algorithm for Protein Folding Problem.	MICAI	2009	DBLP DOI BibTeX RDF	Simulated Annealing, Protein Folding, Peptide
23	Tsepo L. Tsekoa	Molecular modelling of calcium dependent protein kinase 4 (CDPK4) from Plasmodium falciparum.	SAICSIT	2009	DBLP DOI BibTeX RDF	Plasmodium falciparum, protein kinase, structural bioinformatics, Malaria, homology modelling
23	Huafeng Chen, Jianyong Wang	An Improved Population Migration Algorithm for the Prediction of Protein Folding.	ISNN (3)	2009	DBLP DOI BibTeX RDF	Protein-folding lattice model, Improved population migration algorithm, Stability
23	Robert E. Smith 0001, Max Kun Jiang	MILCS in protein structure prediction with default hierarchies.	GEC Summit	2009	DBLP DOI BibTeX RDF	explanatory power, machine learning, evolutionary computation, information theory, mutual information, supervised learning, learning classifier systems, protein structure prediction
23	Yiming Yang, Subramaniam Ganapathy, Abhay Harpale	Protein identification as an information retrieval problem.	SIGIR	2009	DBLP DOI BibTeX RDF	interdisciplinary investigation, vector space models, tandem mass spectra, protein identification
23	Lionel Morgado, Carlos Pereira	Incremental Kernel Machines for Protein Remote Homology Detection.	HAIS	2009	DBLP DOI BibTeX RDF	incremental learning, Kernel machines, protein classification
23	Gisele M. Simas, Silvia Silva da Costa Botelho, Neusa Grando, Rafael G. Colares	Dimensional Reduction in the Protein Secondary Structure Prediction - Nonlinear Method Improvements.	Innovations in Hybrid Intelligent Systems	2008	DBLP DOI BibTeX RDF	C-NLPCA, Dimensional Reduction, Protein Secondary Structure Prediction
23	Lehel Medvés, László Szilágyi, Sándor M. Szilágyi	A Modified Markov Clustering Approach for Protein Sequence Clustering.	PRIB	2008	DBLP DOI BibTeX RDF	Markov clustering, protein sequence clustering, large graph layout, SCOP95 database, sparse matrix