Search results for "re-sequencing"

Hits ?▲	Authors	Title	Venue	Year	Link
10	Brendan O'Fallon, Jacob Durtschi, Ana Kellogg, Tracey Lewis, Devin Close, Hunter Best	Algorithmic improvements for discovery of germline copy number variants in next-generation sequencing data.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
10	Lindsay V. Clark, Wittney Mays, Alexander E. Lipka, Erik J. Sacks	A population-level statistic for assessing Mendelian behavior of genotyping-by-sequencing data from highly duplicated genomes.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
10	Jin-Ok Lee, Jiyon Chu, Gyuyeon Jang, Minho Lee 0002, Yeun-Jun Chung	tReasure: R-based GUI package analyzing tRNA expression profiles from small RNA sequencing data.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
10	Xuemin Dong, Shanshan Dong, Shengkai Pan, Xiangjiang Zhan	RNA-combine: a toolkit for comprehensive analyses on transcriptome data from different sequencing platforms.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
10	Sanna Abrahamsson, Frida Eiengård, Anna Rohlin, Marcela Dávila López	PΨFinder: a practical tool for the identification and visualization of novel pseudogenes in DNA sequencing data.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
10	Kyle Fletcher, Rongkui Han, Diederik Smilde, Richard Michelmore	Variance of allele balance calculated from low coverage sequencing data infers departure from a diploid state.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
10	Vy Nguyen, Johannes Griss	scAnnotatR: framework to accurately classify cell types in single-cell RNA-sequencing data.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
10	Josip Rudar, Teresita M. Porter, Michael Wright, Geoffrey Brian Golding, Mehrdad Hajibabaei	LANDMark: an ensemble approach to the supervised selection of biomarkers in high-throughput sequencing data.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
10	Harry Bowles, Renata Kabiljo, Ahmad Al Khleifat, Ashley Jones, John P. Quinn, Richard J. B. Dobson, Chad M. Swanson, Ammar Al-Chalabi, Alfredo Iacoangeli	An assessment of bioinformatics tools for the detection of human endogenous retroviral insertions in short-read genome sequencing data.	Frontiers Bioinform.	2022	DBLP DOI BibTeX RDF
10	Vivek Ruhela, Anubha Gupta, K. Sriram, Gaurav Ahuja, Gurvinder Kaur, Ritu Gupta	A Unified Computational Framework for a Robust, Reliable, and Reproducible Identification of Novel miRNAs From the RNA Sequencing Data.	Frontiers Bioinform.	2022	DBLP DOI BibTeX RDF
10	Grigorii Sukhorukov, Maryam Khalili, Olivier Gascuel, Thierry Candresse, Armelle Marais-Colombel, Macha Nikolski	VirHunter: A Deep Learning-Based Method for Detection of Novel RNA Viruses in Plant Sequencing Data.	Frontiers Bioinform.	2022	DBLP DOI BibTeX RDF
10	Robert A. Player, Angeline Aguinaldo, Brian B. Merritt, Lisa N. Maszkiewicz, Oluwaferanmi E. Adeyemo, Ellen R. Forsyth, Kathleen J. Verratti, Brant W. Chee, Sarah L. Grady, Christopher E. Bradburne	The META tool optimizes metagenomic analyses across sequencing platforms and classifiers.	Frontiers Bioinform.	2022	DBLP DOI BibTeX RDF
10	Gerald Young	Activation-Inhibition Coordination in Neuron, Brain, and Behavior Sequencing/Organization: Implications for Laterality and Lateralization.	Symmetry	2022	DBLP DOI BibTeX RDF
10	Anthony M. Cirrincione, Cassandra A. Reimonn, Benjamin J. Harrison, Sandra Rieger	Longitudinal RNA Sequencing of Skin and DRG Neurons in Mice with Paclitaxel-Induced Peripheral Neuropathy.	Data	2022	DBLP DOI BibTeX RDF
10	Hicham Touzani, Nicolas Séguy, Hicham Hadj-Abdelkader, Raúl Suárez, Jan Rosell, Leopold Palomo-Avellaneda, Samia Bouchafa	Efficient Industrial Solution for Robotic Task Sequencing Problem With Mutual Collision Avoidance & Cycle Time Optimization.	IEEE Robotics Autom. Lett.	2022	DBLP DOI BibTeX RDF
10	Yingjie Yu, Xiaochun Lu, Tao Zhao, Minjiao Cheng, Lin Liu, Wenchao Wei	Correction: Heuristic approaches for the car sequencing problems with block batches.	EURASIP J. Wirel. Commun. Netw.	2022	DBLP DOI BibTeX RDF
10	Yingjie Yu, Xiaochun Lu, Tao Zhao, Minjiao Cheng, Lin Liu, Wenchao Wei	Heuristic approaches for the car sequencing problems with block batches.	EURASIP J. Wirel. Commun. Netw.	2022	DBLP DOI BibTeX RDF
10	Chang Li, Kevin Ma, Nicole Xu, Chenjian Fu, Andrew He, Xiaoming Liu, Yongsheng Bai	SNPAAMapper-Python: A highly efficient genome-wide SNP variant analysis pipeline for Next-Generation Sequencing data.	Frontiers Artif. Intell.	2022	DBLP DOI BibTeX RDF
10	Laio Oriel Seman, Luiz Alberto Koehler, Eduardo Camponogara, Lucas Zimmermann	Generalized Auto-Sequencing Bus Headway Control Formulation.	IEEE Trans. Intell. Transp. Syst.	2022	DBLP DOI BibTeX RDF
10	Saurabh Kalikar, Chirag Jain, Md. Vasimuddin, Sanchit Misra	Accelerating minimap2 for long-read sequencing applications on modern CPUs.	Nat. Comput. Sci.	2022	DBLP DOI BibTeX RDF
10	Can Kizilkale, Farid Rashidi Mehrabadi, Erfan Sadeqi Azer, Eva Pérez-Guijarro, Kerrie Marie, Maxwell P. Lee, Chi-Ping Day, Glenn Merlino, Funda Ergün, Aydin Buluç, Süleyman Cenk Sahinalp, Salem Malikic	Fast intratumor heterogeneity inference from single-cell sequencing data.	Nat. Comput. Sci.	2022	DBLP DOI BibTeX RDF
10	Chiu-Hung Chen, Fu-I Chou, Jyh-Horng Chou	Optimization of Robotic Task Sequencing Problems by Crowding Evolutionary Algorithms.	IEEE Trans. Syst. Man Cybern. Syst.	2022	DBLP DOI BibTeX RDF
10	Shuangquan Zhang, Anjun Ma, Jing Zhao, Dong Xu 0002, Qin Ma 0003, Yan Wang 0028	Assessing deep learning methods in cis-regulatory motif finding based on genomic sequencing data.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Yunhee Jeong, Lisa Barros de Andrade e Sousa, Dominik Thalmeier, Reka Toth, Marlene Ganslmeier, Kersten Breuer, Christoph Plass, Pavlo Lutsik	Systematic evaluation of cell-type deconvolution pipelines for sequencing-based bulk DNA methylomes.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Artem Danilevsky, Avital Luba Polsky, Noam Shomron	Adaptive sequencing using nanopores and deep learning of mitochondrial DNA.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Hang Cheng, Yuhong Sun, Qing Yang, Minggui Deng, Zhijian Yu, Gang Zhu, Jiuxin Qu, Lei Liu, Liang Yang, Yu Xia	A rapid bacterial pathogen and antimicrobial resistance diagnosis workflow using Oxford nanopore adaptive sequencing method.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Yingxi Yang, Quan Sun, Le Huang, Jai G. Broome, Adolfo Correa, Alexander Reiner, Laura M. Raffield, Yuchen Yang, Yun Li	eSCAN: scan regulatory regions for aggregate association testing using whole-genome sequencing data.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Jingsi Ming, Zhixiang Lin, Jia Zhao, Xiang Wan, Tabula Microcebus Consortium, C. Ezran, S. Liu, Can Yang 0002, Angela Ruohao Wu	FIRM: Flexible integration of single-cell RNA-sequencing data for large-scale multi-tissue cell atlas datasets.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Tianjiao Zhang, Jie Zhou, Wentao Gao, Yuran Jia, Yanan Wei, Guohua Wang	Complex genome assembly based on long-read sequencing.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Siqi Bao, Ke Li, Congcong Yan, Zicheng Zhang, Jia Qu, Meng Zhou 0003	Deep learning-based advances and applications for single-cell RNA-sequencing data analysis.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Haiyue Wang, Xiaoke Ma	Learning deep features and topological structure of cells for clustering of scRNA-sequencing data.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Paula J. Gómez-González, Susana G. Campino, Jody Phelan, Taane G. Clark	Portable sequencing of Mycobacterium tuberculosis for clinical and epidemiological applications.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Hui-Sheng Li, Le Ou-Yang, Yuan Zhu, Hong Yan 0001, Xiao-Fei Zhang	scDEA: differential expression analysis in single-cell RNA-sequencing data via ensemble learning.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Jiahui Ji, Maryam Anwar, Enrico Petretto, Costanza Emanueli, Prashant Kumar Srivastava	PPMS: A framework to Profile Primary MicroRNAs from Single-cell RNA-sequencing datasets.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Simone Marini, Rodrigo A. Mora, Christina Boucher, Noelle Robertson Noyes, Mattia Prosperi	Towards routine employment of computational tools for antimicrobial resistance determination via high-throughput sequencing.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Zhi Ruan, Shengmei Zou, Zeyu Wang, Luhan Zhang, Hangfei Chen, Yuye Wu, Huiqiong Jia, Mohamed S. Draz, Ye Feng	Toward accurate diagnosis and surveillance of bacterial infections using enhanced strain-level metagenomic next-generation sequencing of infected body fluids.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Shiva Dahal-Koirala, Gabriel Balaban, Ralf Stefan Neumann, Lonneke Scheffer, Knut Erik Aslaksen Lundin, Victor Greiff, Ludvig Magne Sollid, Shuo-Wang Qiao, Geir Kjetil Sandve	TCRpower: quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Umm-Kulthum Ismail Umlai, Dhinoth Kumar Bangarusamy, Xavier Estivill, Puthen Veettil Jithesh	Genome sequencing data analysis for rare disease gene discovery.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Atlas M. Sardoo, Shaoqiang Zhang, Thomas N. Ferraro, Thomas M. Keck, Yong Chen	Decoding brain memory formation by single-cell RNA sequencing.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Shih-Kai Chu, Shilin Zhao, Yu Shyr, Qi Liu 0024	Comprehensive evaluation of noise reduction methods for single-cell RNA sequencing data.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Dietmar Fernández-Orth, Manuel Rueda, Babita Singh, Mauricio Moldes, Aina Jene, Marta Ferri, Claudia Vasallo, Lauren A. Fromont, Arcadi Navarro, Jordi Rambla	A quality control portal for sequencing data deposited at the European genome-phenome archive.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Jiawei Zou, Fulan Deng, Miaochen Wang, Zhen Zhang, Zheqi Liu, Xiaobin Zhang, Rong Hua, Ke Chen, Xin Zou, Jie Hao	scCODE: an R package for data-specific differentially expressed gene detection on single-cell RNA-sequencing data.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Sander N. Goossens, Tim H. Heupink, Elise De Vos, Anzaan Dippenaar, Margaretha De Vos, Rob Warren 0001, Annelies Van Rie	Detection of minor variants in Mycobacterium tuberculosis whole genome sequencing data.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Ruibo Zhang, Souparno Ghosh, Ranadip Pal	Predicting binding affinities of emerging variants of SARS-CoV-2 using spike protein sequencing data: observations, caveats and recommendations.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Jiacheng Wang, Quan Zou, Chen Lin	A comparison of deep learning-based pre-processing and clustering approaches for single-cell RNA sequencing data.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Mengfei Liu, Linlin Hao, Sien Yang, Xiaohui Wu	PolyAtailor: measuring poly(A) tail length from short-read and long-read sequencing data.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Xue Zhang, Chen-Guang Liu, Shi-Hui Yang, Xia Wang, Feng-Wu Bai, Zhuo Wang	Benchmarking of long-read sequencing, assemblers and polishers for yeast genome.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Ho-Jin Gwak, Mina Rho	ViBE: a hierarchical BERT model to identify eukaryotic viruses using metagenome sequencing data.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Tingting Yang, Mingyu Gan, Qingyun Liu, Wenying Liang, Qiqin Tang, Geyang Luo, Tianyu Zuo, Yongchao Guo, Chuangyue Hong, Qibing Li, Weiguo Tan, Qian Gao	SAM-TB: a whole genome sequencing data analysis website for detection of Mycobacterium tuberculosis drug resistance and transmission.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
10	Abhijeet Singh, Anna Schnürer	AcetoBase Version 2: a database update and re-analysis of formyltetrahydrofolate synthetase amplicon sequencing data from anaerobic digesters.	Database J. Biol. Databases Curation	2022	DBLP DOI BibTeX RDF
10	Aditya Narayan Ravi, Alireza Vahid, Ilan Shomorony	Coded Shotgun Sequencing.	IEEE J. Sel. Areas Inf. Theory	2022	DBLP DOI BibTeX RDF
10	Zoe Weiss, Saurja Dasgupta	REVERSE: a user-friendly web server for analyzing next-generation sequencing data from in vitro selection/evolution experiments.	Nucleic Acids Res.	2022	DBLP DOI BibTeX RDF
10	Fayrouz Hammal, Pierre de langen, Aurélie Bergon, Fabrice Lopez, Benoît Ballester	ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments.	Nucleic Acids Res.	2022	DBLP DOI BibTeX RDF
10	Youlong Lv, Jie Zhang 0041, Liling Zuo	Genetic regulatory network-based optimisation of master production scheduling and mixed-model sequencing in assembly lines.	Int. J. Bio Inspired Comput.	2022	DBLP DOI BibTeX RDF
10	Michael Hall	Rasusa: Randomly subsample sequencing reads to a specified coverage.	J. Open Source Softw.	2022	DBLP DOI BibTeX RDF
10	Véronique Legrand, Thomas Kergrohen, Nicolas Joly, Alexis Criscuolo	ROCK: digital normalization of whole genome sequencing data.	J. Open Source Softw.	2022	DBLP DOI BibTeX RDF
10	Zheng Li, Chang Tang, Xiao Zheng, Zhenglai Li, Wei Zhang 0049, Lijuan Cao	Unified K-means coupled self-representation and neighborhood kernel learning for clustering single-cell RNA-sequencing data.	Neurocomputing	2022	DBLP DOI BibTeX RDF
10	Zhengkai Li, Hao Sun, Xinghu Yu, Weichao Sun	Heuristic sequencing hopfield neural network for pick-and-place location routing in multi-functional placers.	Neurocomputing	2022	DBLP DOI BibTeX RDF
10	Moritz Ruf, Jean-François Cordeau, Emma Frejinger	The load planning and sequencing problem for double-stack trains.	J. Rail Transp. Plan. Manag.	2022	DBLP DOI BibTeX RDF
10	Yifu Li, Tinglong Dai, Xiangtong Qi	A Theory of Interior Peaks: Activity Sequencing and Selection for Service Design.	Manuf. Serv. Oper. Manag.	2022	DBLP DOI BibTeX RDF
10	Bhawani Sankar Biswal, Anjali Mohapatra, Swati Vipsita	Ensemble Neighborhood Search (ENS) for biclustering of gene expression microarray data and single cell RNA sequencing data.	J. King Saud Univ. Comput. Inf. Sci.	2022	DBLP DOI BibTeX RDF
10	Kun Xie, Kang Liu, Haque A. K. Alvi, Wenyue Ji, Shuzhen Wang, Liang Chang 0003, Xiguo Yuan	IhybCNV: An intra-hybrid approach for CNV detection from next-generation sequencing data.	Digit. Signal Process.	2022	DBLP DOI BibTeX RDF
10	Jonathan S. Abebe, Alexander M. Price, Katharina E. Hayer, Ian Mohr, Matthew D. Weitzman, Angus C. Wilson, Daniel P. Depledge	DRUMMER - rapid detection of RNA modifications through comparative nanopore sequencing.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Marina Murillo-Recio, Ignacio Miguel Martínez de Lejarza Samper, Cristina Tuñí i Domínguez, Lluís Ribas de Pouplana, Adrian Gabriel Torres	tRNAstudio: facilitating the study of human mature tRNAs from deep sequencing datasets.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Xian F. Mallory, Luay Nakhleh	SimSCSnTree: a simulator of single-cell DNA sequencing data.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Yang Chen 0004, Shue Chen, Elissa P. Lei	DiffChIPL: a differential peak analysis method for high-throughput sequencing data with biological replicates based on limma.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Hao Zhang, Qixin Chang, Zekun Yin, Xiaoming Xu, Yanjie Wei, Bertil Schmidt, Weiguo Liu	RabbitV: fast detection of viruses and microorganisms in sequencing data on multi-core architectures.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Lily Zheng, Noushin Niknafs, Laura D. Wood, Rachel Karchin, Robert B. Scharpf	Estimation of cancer cell fractions and clone trees from multi-region sequencing of tumors.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Zuhal Ozcan, Francis A. San Lucas, Justin W. Wong, Kyle Chang, Konrad H. Stopsack, Jerry Fowler, Yasminka A. Jakubek, Paul Scheet	Chromosomal imbalances detected via RNA-sequencing in 28 cancers.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Chixiang Chen, Yuk Yee Leung, Matei Ionita, Li-San Wang, Mingyao Li	Omnibus and robust deconvolution scheme for bulk RNA sequencing data integrating multiple single-cell reference sets and prior biological knowledge.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	José Bonet 0001, Mandi Chen, Marc Dabad, Simon Heath, Abel Gonzalez-Perez, Núria López-Bigas, Jens Lagergren	DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Marina Ainciburu, Duncan M. Morgan, Erica A. K. Depasquale, J. Christopher Love, Felipe Prósper, Peter van Galen	WAT3R: recovery of T-cell receptor variable regions from 3′ single-cell RNA-sequencing.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Maximillian G. Marin, Roger Vargas, Michael Harris, Brendan Jeffrey, L. Elaine Epperson, David Durbin, Michael Strong, Max Salfinger, Zamin Iqbal, Irada Akhundova, Sergo Vashakidze, Valeriu Crudu, Alex Rosenthal, Maha R. Farhat	Benchmarking the empirical accuracy of short-read sequencing across the M. tuberculosis genome.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Mateusz Chilinski, Dariusz Plewczynski	ConsensuSV - from the whole-genome sequencing data to the complete variant list.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	James M. Ferguson, Hasindu Gamaarachchi, Thanh Nguyen, Alyne Gollon, Stephanie Tong, Chiara Aquilina-Reid, Rachel Bowen-James, Ira W. Deveson	InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Xin Wei, Ziyi Li, Hongkai Ji, Hao Wu 0003	EDClust: an EM-MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Matthew Hayes, Angela Nguyen, Rahib Islam, Caryn Butler, Ethan Tran, Derrick Mullins, Chindo Hicks	HolistIC: leveraging Hi-C and whole genome shotgun sequencing for double minute chromosome discovery.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Giacomo Baruzzo, Giulia Cesaro, Barbara Di Camillo	Identify, quantify and characterize cellular communication from single-cell RNA sequencing data with scSeqComm.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Lance D. Hentges, Martin J. Sergeant, Christopher B. Cole, Damien J. Downes, Jim R. Hughes, Stephen Taylor	LanceOtron: a deep learning peak caller for genome sequencing experiments.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Zhenhua Yu 0002, Fang Du	AMC: accurate mutation clustering from single-cell DNA sequencing data.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Sandra Hui, Rasmus Nielsen	SCONCE: a method for profiling copy number alterations in cancer evolution using single-cell whole genome sequencing.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Dohyeon Lee, Giltae Song	FastqCLS: a FASTQ compressor for long-read sequencing via read reordering using a novel scoring model.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Givanna H. Putri, Simon Anders, Paul Theodor Pyl, John E. Pimanda, Fabio Zanini	Analysing high-throughput sequencing data in Python with HTSeq 2.0.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Piyush Ranjan, Christopher A. Brown, John R. Erb-Downward, Robert P. Dickson	SNIKT: sequence-independent adapter identification and removal in long-read shotgun sequencing data.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Zilong Zhang, Feifei Cui, Wei Su, Lijun Dou, Anqi Xu, Chen Cao, Quan Zou 0001	webSCST: an interactive web application for single-cell RNA-sequencing data and spatial transcriptomic data integration.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Chien-Chi Lo, Migun Shakya, Ryan Connor, Karen Davenport, Mark Flynn, Adán Myers y Gutiérrez, Bin Hu, Po-E Li, Elais Player Jackson, Yan Xu, Patrick S. G. Chain	EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Richard A. Stanton, Nicholas Vlachos, Alison Laufer Halpin	GAMMA: a tool for the rapid identification, classification and annotation of translated gene matches from sequencing data.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Xiaoli Jiao, Hiromi Imamichi, Brad T. Sherman, Rishub Nahar, Robin L. Dewar, H. Clifford Lane, Tomozumi Imamichi, Weizhong Chang	QuasiSeq: profiling viral quasispecies via self-tuning spectral clustering with PacBio long sequencing reads.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Fei Qin, Xizhi Luo, Feifei Xiao, Guoshuai Cai	SCRIP: an accurate simulator for single-cell RNA sequencing data.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Ke Jin, Bo Li, Hong Yan 0001, Xiao-Fei Zhang	Imputing dropouts for single-cell RNA sequencing based on multi-objective optimization.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Lu Pan, Huy Q. Dinh, Yudi Pawitan, Trung-Nghia Vu	Isoform-level quantification for single-cell RNA sequencing.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Justine Labory, Gwendal Le Bideau, David Pratella, Jean-Elisée Yao, Samira Ait-El-Mkadem Saadi, Sylvie Bannwarth, Loubna El-Hami, Véronique Paquis-Flucklinger, Silvia Bottini	ABEILLE: a novel method for ABerrant Expression Identification empLoying machine LEarning from RNA-sequencing data.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Yunxiao Ren, Trinad Chakraborty, Swapnil Doijad, Linda Falgenhauer, Jane Falgenhauer, Alexander Goesmann, Anne-Christin Hauschild, Oliver Schwengers, Dominik Heider	Prediction of antimicrobial resistance based on whole-genome sequencing and machine learning.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Ilya Vainberg-Slutskin, Noga Kowalsman, Yael Silberberg, Tal Cohen, Jenia Gold, Edith Kario, Iddo Weiner, Inbar Gahali-Sass, Sharon Kredo-Russo, Naomi B. Zak, Merav Bassan	Exodus: sequencing-based pipeline for quantification of pooled variants.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Guangyi Chen, Zhi-Ping Liu	Graph attention network for link prediction of gene regulations from single-cell RNA-sequencing data.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Emira Cherif, Fatou Seck Thiam, Mohammad Salma, Georgina Rivera-Ingraham, Fabienne Justy, Theo Deremarque, Damien Breugnot, Jean-Claude Doudou, Rodolphe E. Gozlan, Marine Combe	ONTdeCIPHER: an amplicon-based nanopore sequencing pipeline for tracking pathogen variants.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Hana Rozhonová, Daniel Danciu, Stefan Stark, Gunnar Rätsch, André Kahles, Kjong-Van Lehmann	SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Martin Hunt, Jeremy Swann, Bede Constantinides, Philip Fowler, Zamin Iqbal	ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Yupei You, Michael B. Clark, Heejung Shim	NanoSplicer: accurate identification of splice junctions using Oxford Nanopore sequencing.	Bioinform.	2022	DBLP DOI BibTeX RDF
10	Valentín Valero, Gregorio Díaz 0001, Juan Boubeta-Puig, Hermenegilda Macià, Enrique Brazález	A Compositional Approach for Complex Event Pattern Modeling and Transformation to Colored Petri Nets with Black Sequencing Transitions.	IEEE Trans. Software Eng.	2022	DBLP DOI BibTeX RDF