Search results for "yeast"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
10	Sing-Hoi Sze, Xiaoyan Zhao	Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
10	Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli	An Interaction-Dependent Model for Transcription Factor Binding.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
10	Guandong Wang, Weixiong Zhang	Build a Dictionary, Learn a Grammar, Decipher Stegoscripts, and Discover Genomic Regulatory Elements.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
10	Manuel Middendorf, Anshul Kundaje, Mihir Shah, Yoav Freund, Chris Wiggins 0001, Christina S. Leslie	Motif Discovery Through Predictive Modeling of Gene Regulation.	RECOMB	2005	DBLP DOI BibTeX RDF
10	Wolfgang P. Lehrach, Dirk Husmeier, Christopher K. I. Williams	Probabilistic in Silico Prediction of Protein-Peptide Interactions.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
10	Orna Man, Joel L. Sussman, Yitzhak Pilpel	Examination of the tRNA Adaptation Index as a Predictor of Protein Expression Levels.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
10	Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Shamir	The Factor Graph Network Model for Biological Systems.	RECOMB	2005	DBLP DOI BibTeX RDF
10	David Kulp, Manjunatha Jagalur	Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
10	Haseong Kim, Jae K. Lee, Taesung Park	Improvement of Computing Times in Boolean Networks Using Chi-square Tests.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
10	Chen-Hsiang Yeang, Tommi S. Jaakkola	Modeling the Combinatorial Functions of Multiple Transcription Factors.	RECOMB	2005	DBLP DOI BibTeX RDF
10	Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker	Comparison of Protein-Protein Interaction Confidence Assignment Schemes.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
10	Emil Saucan, Eli Appleboim	Curvature Based Clustering for DNA Microarray Data Analysis.	IbPRIA (2)	2005	DBLP DOI BibTeX RDF
10	Han-Saem Park, Sung-Bae Cho	Evolutionary Clustering Algorithm with Knowledge-Based Evaluation for Fuzzy Cluster Analysis of Gene Expression Profiles.	PReMI	2005	DBLP DOI BibTeX RDF
10	Ross D. King	The Robot Scientist Project.	ALT	2005	DBLP DOI BibTeX RDF
10	Haiying Wang 0001, Francisco Azuaje, Olivier Bodenreider	An Ontology-Driven Clustering Method for Supporting Gene Expression Analysis.	CBMS	2005	DBLP DOI BibTeX RDF
10	Fabrizio Angiulli, Clara Pizzuti	Gene Expression Biclustering Using Random Walk Strategies.	DaWaK	2005	DBLP DOI BibTeX RDF
10	Jesús S. Aguilar-Ruiz, Federico Divina	Evolutionary Biclustering of Microarray Data.	EvoWorkshops	2005	DBLP DOI BibTeX RDF
10	Yuji Kawada, Yasubumi Sakakibara	Discriminative Discovery of Transcription Factor Binding Sites from Location Data.	CSB	2005	DBLP DOI BibTeX RDF
10	Xiang Guo, Hai Hu, Michael N. Liebman, Craig D. Shriver	Semantic Similarity-based Validation of Human Protein-Protein Interactions.	CSB Workshops	2005	DBLP DOI BibTeX RDF
10	Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fangfang Pan, Liming Cai	Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes.	CSB	2005	DBLP DOI BibTeX RDF	RNA secondary structure profiling, Pseudo-knot search, Covariance model, Tree decomposition
10	Daniel Barker, Mark Pagel	Predicting functional gene-links from phylogenetic-statistical analyses of whole genomes.	CSB Workshops	2005	DBLP DOI BibTeX RDF
10	Anantharaman Kalyanaraman, Srinivas Aluru	Efficient Algorithms and Software for Detection of Full-Length LTR Retrotransposons.	CSB	2005	DBLP DOI BibTeX RDF
10	Changyu Shen, Lang Li 0001, Jake Yue Chen	Discover True Association Rates in Multi-protein Complex Proteomics Data Sets.	CSB	2005	DBLP DOI BibTeX RDF
10	Jiaxiong Pi, Yong Shi 0001, Zhengxin Chen	Similarity and cluster analysis algorithms for Microarrays using R trees.	CSB Workshops	2005	DBLP DOI BibTeX RDF
10	Bernard Chen 0001, Robert W. Harrison, Yi Pan 0001, Phang C. Tai	Novel Hybrid Hierarchical-K-means Clustering Method (H-K-means) for Microarray Analysis.	CSB Workshops	2005	DBLP DOI BibTeX RDF
10	Matthew T. Weirauch, Joshua M. Stuart	Discovering Functional Transcription Factor Binding from Superimposed Gene Networks.	CSB Workshops	2005	DBLP DOI BibTeX RDF
10	Jae-Hong Eom, Byoung-Tak Zhang	Extraction of Gene/Protein Interaction from Text Documents with Relation Kernel.	KES (2)	2005	DBLP DOI BibTeX RDF
10	Doosung Hwang, Ung-Mo Kim, Jaehun Choi, Jeho Park, Jang-Hee Yoo	Predictive Model for Protein Function Using Modular Neural Approach.	ICAPR (1)	2005	DBLP DOI BibTeX RDF
10	Ioannis A. Maraziotis, Andrei Dragomir, Anastasios Bezerianos	Recurrent Neuro-fuzzy Network Models for Reverse Engineering Gene Regulatory Interactions.	CompLife	2005	DBLP DOI BibTeX RDF
10	Xiaobo Zhou 0001, Stephen T. C. Wong	Dynamic sub-cellular behavior study in high content imaging using a multi-threshold approach.	ISCAS (5)	2005	DBLP DOI BibTeX RDF
10	Sookjeong Kim, Seungjin Choi	Independent arrays or independent time courses for gene expression time series.	ISCAS (6)	2005	DBLP DOI BibTeX RDF
10	Rui Yamaguchi, Satoru Yamashita, Tomoyuki Higuchi	Estimating Gene Networks with cDNA Microarray Data Using State-Space Models.	ICCSA (3)	2005	DBLP DOI BibTeX RDF
10	Philip M. Long, Vinay Varadan, Sarah Gilman, Mark Treshock, Rocco A. Servedio	Unsupervised evidence integration.	ICML	2005	DBLP DOI BibTeX RDF
10	Mark-A. Krogel, Tobias Scheffer	Multi-Relational Learning, Text Mining, and Semi-Supervised Learning for Functional Genomics.	Mach. Learn.	2004	DBLP DOI BibTeX RDF	information extraction, co-training, propositionalization
10	Debashis Ghosh	Identification of Shared Components and Sparse Networks in Gene Expression Time-Course Data.	J. VLSI Signal Process.	2004	DBLP DOI BibTeX RDF	singular value decomposition, high-dimensional data, network visualization, principal components, projection pursuit
10	Heli Hiisilä, Ella Bingham	Dependencies between Transcription Factor Binding Sites: Comparison between ICA, NMF, PLSA and Frequent Sets.	ICDM	2004	DBLP DOI BibTeX RDF
10	Amanda Clare, Hugh E. Williams, Nicholas Lester	Scalable Multi-Relational Association Mining.	ICDM	2004	DBLP DOI BibTeX RDF
10	Akihiko Ichikawa, Fumihito Arai, Hisataka Maruyama, Toshio Fukuda, Tohoru Katsuragi	Single Cell Trap on a Chip using In-situ Microfabrication with Photo-crosslinkable Resin and Thermal Gelation.	ICRA	2004	DBLP DOI BibTeX RDF
10	Chaya Ben-Zaken Zilberstein, Eleazar Eskin, Zohar Yakhini	Using Expression Data to Discover RNA and DNA Regulatory Sequence Motifs.	Regulatory Genomics	2004	DBLP DOI BibTeX RDF
10	Eran Segal, Roded Sharan	A discriminative model for identifying spatial cis-regulatory modules.	RECOMB	2004	DBLP DOI BibTeX RDF	cis-regulatory module, probabilistic model, transcriptional regulation
10	Rahul Siddharthan, Erik van Nimwegen, Eric D. Siggia	PhyloGibbs: A Gibbs Sampler Incorporating Phylogenetic Information.	Regulatory Genomics	2004	DBLP DOI BibTeX RDF
10	George Barreto Bezerra, Leandro Nunes de Castro, Fernando J. Von Zuben	A Hierarchical Immune Network Applied to Gene Expression Data.	ICARIS	2004	DBLP DOI BibTeX RDF
10	Jyotsna Kasturi, Raj Acharya	Clustering of diverse genomic data using information fusion.	SAC	2004	DBLP DOI BibTeX RDF	diverse data, motif frequency, clustering, gene expression, information fusion
10	Jae-Hong Eom, Byoung-Tak Zhang	BioPubMiner: Machine Learning Component-Based Biomedical Information Analysis Platform.	CIT	2004	DBLP DOI BibTeX RDF
10	Soon-Heng Tan, Wing-Kin Sung, See-Kiong Ng	Discovering Novel Interacting Motif Pairs from Large Protein-Protein Interaction Datasets.	BIBE	2004	DBLP DOI BibTeX RDF
10	Dong-Soo Han, Hong-Soog Kim, Woo-Hyuk Jang, Sung-Doke Lee	Domain Combination Based Protein-Protein Interaction Possibility Ranking Method.	BIBE	2004	DBLP DOI BibTeX RDF
10	Wai-Ki Ching, Eric S. Fung, Michael K. Ng 0001	Building Genetic Networks for Gene Expression Patterns.	IDEAL	2004	DBLP DOI BibTeX RDF
10	Zheng Yun, Kwoh Chee Keong 0001	Reconstructing Boolean networks from noisy gene expression data.	ICARCV	2004	DBLP DOI BibTeX RDF
10	Han-Saem Park, Si-Ho Yoo, Sung-Bae Cho	A Fuzzy Clustering Algorithm for Analysis of Gene Expression Profiles.	PRICAI	2004	DBLP DOI BibTeX RDF
10	Vladimir Filkov, Steven Skiena	Heterogeneous Data Integration with the Consensus Clustering Formalism.	DILS	2004	DBLP DOI BibTeX RDF
10	Hee Young Kang, Hak Yong Kim	Functional Modules from Protein Networks of Kinome and Cell Cycle in Saccharomyces Cerevisiae.	CSB	2004	DBLP DOI BibTeX RDF
10	Shiming Dong, Eileen T. Kraemer	Calculation, Visualization, and Manipulation of MASTs (Maximum Agreement Subtrees).	CSB	2004	DBLP DOI BibTeX RDF
10	Xutao Deng, Hesham H. Ali	A Hidden Markov Model for Gene Function Prediction from Sequential Expression Data.	CSB	2004	DBLP DOI BibTeX RDF
10	Karuturi R. Krishna Murthy, Liu Jian Hua	Improved Fourier Transform Method for Unsupervised Cell-Cycle Regulated Gene Prediction.	CSB	2004	DBLP DOI BibTeX RDF	Fourier transform, Microarray, Cell cycle, Gene prediction
10	Ying Liu 0007, Brian J. Ciliax, Karin Borges, Venu Dasigi, Ashwin Ram 0001, Shamkant B. Navathe, Ray Dingledine	Comparison of Two Schemes for Automatic Keyword Extraction from MEDLINE for Functional Gene Clustering.	CSB	2004	DBLP DOI BibTeX RDF
10	Alon Kaufman, Martin Kupiec, Eytan Ruppin	Multi-Knockout Genetic Network Analysis: The Rad6 Example.	CSB	2004	DBLP DOI BibTeX RDF
10	Wei Wang 0086, Gregory F. Cooper	An Bayesian Method for Biological Pathway Discovery from High-Throughput Experimental Data.	CSB	2004	DBLP DOI BibTeX RDF
10	Jonathan J. Ward, Jaspreet Singh Sodhi, Bernard F. Buxton, David T. Jones	Predicting Gene Ontology Annotations from Sequence Data Using Kernel-Based Machine Learning Algorithms.	CSB	2004	DBLP DOI BibTeX RDF
10	Yinhe Cao, Wen-wen Tung, Jianbo Gao	Recurrence Time Statistics: Versatile Tools for Genomic DNA Sequence Analysis.	CSB	2004	DBLP DOI BibTeX RDF
10	Patrik D'haeseleer, George M. Church	Estimating and Improving Protein Interaction Error Rates.	CSB	2004	DBLP DOI BibTeX RDF
10	Jinze Liu, Wei Wang 0010, Jiong Yang 0001	Gene Ontology Friendly Biclustering of Expression Profiles.	CSB	2004	DBLP DOI BibTeX RDF	Tendency Preserving, Gene Ontology, Biclustering, Gene expression profiles
10	Haemoon Jung, Kyungsook Han	Prediction of Protein Functions Using Protein Interaction Data.	International Conference on Computational Science	2004	DBLP DOI BibTeX RDF
10	Kyungsook Han, Byungkyu Park	A Database Server for Predicting Protein-Protein Interactions.	International Conference on Computational Science	2004	DBLP DOI BibTeX RDF
10	Bulent Akay	Nonlinear Parametric Model Identification and Model Based Control of S. cerevisiae Production.	International Conference on Computational Science	2004	DBLP DOI BibTeX RDF
10	Jae-Hong Eom, Byoung-Tak Zhang	PubMiner: Machine Learning-Based Text Mining System for Biomedical Information Mining.	AIMSA	2004	DBLP DOI BibTeX RDF	Bioinformatics and Software Application, Data Mining, Machine Learning, Natural Language Processing
10	Jin Chen 0012, Wynne Hsu, Mong-Li Lee, See-Kiong Ng	Systematic Assessment of High-Throughput Experimental Data for Reliable Protein Interactions Using Network Topology.	ICTAI	2004	DBLP DOI BibTeX RDF
10	Florencio Pazos, David Guijas, Manuel J. Gómez, Almudena Trigo, Victor de Lorenzo, Alfonso Valencia	The Biodegradation Network, a New Scenario for Computational Systems Biology Research.	CMSB	2004	DBLP DOI BibTeX RDF
10	Mukund Sundararajan, Michael Brudno, Kerrin S. Small, Arend Sidow, Serafim Batzoglou	Chaining Algorithms for Alignment of Draft Sequence.	WABI	2004	DBLP DOI BibTeX RDF
10	Benny Chor, Tamir Tuller	Adding Hidden Nodes to Gene Networks (Extended Abstract).	WABI	2004	DBLP DOI BibTeX RDF	network expansion, Bayesian networks, compression, maximum likelihood, minimum description length, EM, gene network
10	Xintao Wu, Yong Ye, Liying Zhang	Graphical modeling based gene interaction analysis for microarray data.	SIGKDD Explor.	2003	DBLP DOI BibTeX RDF	loglinear modeling, graphical modeling, microarray data analysis
10	Roberto Serra, Marco Villani 0001, Alessandro Semeria	Robustness to Damage of Biological and Synthetic Networks.	ECAL	2003	DBLP DOI BibTeX RDF
10	Tu Minh Phuong, Doheon Lee, Kwang Hyung Lee	Regulatory Element Discovery Using Tree-structured Models.	ICDM	2003	DBLP DOI BibTeX RDF
10	Mark-A. Krogel, Tobias Scheffer	Effectiveness of Information Extraction, Multi-Relational, and Semi-Supervised Learning for Predicting Functional Properties of Genes.	ICDM	2003	DBLP DOI BibTeX RDF
10	Amos Tanay, Ron Shamir	Modeling transcription programs: inferring binding site activity and dose-response model optimization.	RECOMB	2003	DBLP DOI BibTeX RDF
10	Derek Y. Chiang, Alan M. Moses, Manolis Kamvysselis, Eric S. Lander, Michael B. Eisen	Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts.	RECOMB	2003	DBLP DOI BibTeX RDF	multifactorial regulation, phylogenetic footprinting, promoter structure, comparative genomics, transcription regulation
10	Minghua Deng, Ting Chen 0006, Fengzhu Sun	An integrated probabilistic model for functional prediction of proteins.	RECOMB	2003	DBLP DOI BibTeX RDF	function prediction, pfam domain, Markov random field, protein-protein interaction, Gibbs sampler
10	George Barreto Bezerra, Leandro Nunes de Castro	Bioinformatics Data Analysis Using an Artificial Immune Network.	ICARIS	2003	DBLP DOI BibTeX RDF
10	Jiong Yang 0001, Haixun Wang, Wei Wang 0010, Philip S. Yu	Enhanced Biclustering on Expression Data.	BIBE	2003	DBLP DOI BibTeX RDF
10	Rui Mao 0001, Weijia Xu, Neha Singh 0001, Daniel P. Miranker	An Assessment of a Metric Space Database Index to Support Sequence Homology.	BIBE	2003	DBLP DOI BibTeX RDF
10	Yiqiu Han, Wai Lam	Exploiting Heterogeneous Features for Classification Learning.	IDEAL	2003	DBLP DOI BibTeX RDF	hierarchical features, parameter estimation, Bayesian learning
10	Eric P. Xing, Wei Wu 0023, Michael I. Jordan, Richard M. Karp	LOGOS: a modular Bayesian model for de novo motif detection.	CSB	2003	DBLP DOI BibTeX RDF
10	Tanveer Fathima Syeda-Mahmood	Clustering Time-Varying Gene Expression Profiles using Scale-space Signals.	CSB	2003	DBLP DOI BibTeX RDF
10	Yiqiu Han, Wai Lam	Exploiting Hierarchical Domain Values for Bayesian Learning.	PAKDD	2003	DBLP DOI BibTeX RDF
10	Jack Y. Yang, Mary Qu Yang, Okan K. Ersoy	Exploring Protein Functional Relationships Using Genomic Information and Data Mining Techniques.	ICANN	2003	DBLP DOI BibTeX RDF
10	Hagit Shatkay, Stephen Edwards, Mark Boguski	Information Retrieval Meets Gene Analysis.	IEEE Intell. Syst.	2002	DBLP DOI BibTeX RDF
10	Mark Craven	The Genomics of a Signaling Pathway: A KDD Cup Challenge Task.	SIGKDD Explor.	2002	DBLP DOI BibTeX RDF	data mining competition, genomics, gene regulation
10	Ron O. Dror, Jonathan G. Murnick, Nicola A. Rinaldi, Voichita D. Marinescu, Ryan M. Rifkin, Richard A. Young	A bayesian approach to transcript estimation from gene array data: the BEAM technique.	RECOMB	2002	DBLP DOI BibTeX RDF	affymetrix chips, statistical confidence, bayesian estimation, DNA microarrays
10	Ziv Bar-Joseph, Georg K. Gerber, David K. Gifford, Tommi S. Jaakkola, Itamar Simon	A new approach to analyzing gene expression time series data.	RECOMB	2002	DBLP DOI BibTeX RDF
10	Saurabh Sinha	Discriminative motifs.	RECOMB	2002	DBLP DOI BibTeX RDF
10	Guoying Liu, Ann E. Loraine, Ron Shigeta, Melissa S. Cline, Jill Cheng, Stephen A. Chervitz, David Kulp, Michael A. Siani-Rose	NetAffx: affymetrix probeset annotations.	SAC	2002	DBLP DOI BibTeX RDF	GRAPA, GeneChip, netaffx, microarray, protein domains
10	Yulan Liang, Arpad Kelemen	Mining heterogeneous gene expression data with time lagged recurrent neural networks.	KDD	2002	DBLP DOI BibTeX RDF	backpropagation through time, time lagged neural network, trajectory learning, heterogeneous, gene expression
10	Peter Antal, Patrick Glenisson, Geert Fannes	On the potential of domain literature for clustering and Bayesian network learning.	KDD	2002	DBLP DOI BibTeX RDF	data mining, clustering, Bayesian networks, text mining
10	Laurent Manyri, Andrei Doncescu, Gilles Roux, Boutaib Dahhou	Parallel Differential Algorithms for Fermentation Process.	ICPP Workshops	2002	DBLP DOI BibTeX RDF
10	Christian Uehara, Ioannis A. Kakadiaris	Towards Automatic Analysis of DNA Microarrays.	WACV	2002	DBLP DOI BibTeX RDF
10	Liling L. Warren, Ben Hui Liu	Combinatorial Use of Short Probes for Differential Gene Expression Profiling.	WABI	2002	DBLP DOI BibTeX RDF
10	Doron Lipson, Peter Webb, Zohar Yakhini	Designing Specific Oligonucleotide Probes for the Entire S. cerevisiae Transcriptome.	WABI	2002	DBLP DOI BibTeX RDF
10	G. Cuartero, Vincent Galy, Ulf Nehrbass, Vannary Meas-Yedid, Jean-Christophe Olivo-Marin	Three dimensional spot detection by multiscale analysis.	ICIP (1)	2001	DBLP DOI BibTeX RDF
10	Amanda Clare, Ross D. King	Knowledge Discovery in Multi-label Phenotype Data.	PKDD	2001	DBLP DOI BibTeX RDF
10	Yuh-Jyh Hu	Biological Sequence Data Mining.	PKDD	2001	DBLP DOI BibTeX RDF
10	Vladimir Filkov, Steven Skiena, Jizu Zhi	Analysis techniques for microarray time-series data.	RECOMB	2001	DBLP DOI BibTeX RDF