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Found 33 publication records. Showing 32 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
1 | Jarjapu Mahita, Brendan Ha, Anais Gambiez, Sharon L. Schendel, Haoyang Li, Kathryn M. Hastie, S. Moses Dennison, Kan Li, Natalia Kuzmina, Sivakumar Periasamy, Alexander Bukreyev, Jennifer E. Munt, Mary Osei-Twum, Caroline Atyeo, James A. Overton, Randi Vita, Hector Guzman-Orozco, Marcus Mendes, Mari Kojima, Peter J. Halfmann, Yoshihiro Kawaoka, Galit Alter, Luc Gagnon, Ralph S. Baric, Georgia D. Tomaras, Tim Germann, Daniel Bedinger, Jason A. Greenbaum, Erica Ollmann Saphire, Bjoern Peters |
Coronavirus Immunotherapeutic Consortium Database. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Database J. Biol. Databases Curation ![In: Database J. Biol. Databases Curation 2023, February 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler 0001, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall |
A Simple Standard for Sharing Ontological Mappings (SSSOM). ![Search on Bibsonomy](Pics/bibsonomy.png) |
Database J. Biol. Databases Curation ![In: Database J. Biol. Databases Curation 2022(2022), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland |
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Database J. Biol. Databases Curation ![In: Database J. Biol. Databases Curation 2022(2022), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland |
Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2207.02056, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Mélanie Courtot, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith 0001, Christian J. Stoeckert Jr., Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng 0001, Christopher J. Mungall, Bjoern Peters |
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Database J. Biol. Databases Curation ![In: Database J. Biol. Databases Curation 2021, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
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1 | Randi Vita, Jie Zheng 0001, Rebecca C. Jackson, Damion M. Dooley, James A. Overton, Mark A. Miller, Daniel C. Berrios, Richard H. Scheuermann, Yongqun He, Hande Küçük-McGinty, Mathias Brochhausen, Aisyah Yu Lin, Sagar B. Jain, Marcus C. Chibucos, John Judkins, Michelle G. Giglio, Irene Y. Feng, Gully Burns, Matthew H. Brush, Bjoern Peters, Christian J. Stoeckert Jr. |
Standardization of assay representation in the Ontology for Biomedical Investigations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Database J. Biol. Databases Curation ![In: Database J. Biol. Databases Curation 2021, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
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1 | Lindy Edwards, Rebecca C. Jackson, James A. Overton, Randi Vita, Nina Blazeska, Bjoern Peters, Alessandro Sette |
An immunologically friendly classification of non-peptidic ligands. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Database J. Biol. Databases Curation ![In: Database J. Biol. Databases Curation 2021, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
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1 | Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler 0001, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall |
A Simple Standard for Sharing Ontological Mappings (SSSOM). ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2112.07051, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP BibTeX RDF |
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1 | James A. Overton, Michael Cuffaro, Christopher J. Mungall |
String of PURLs - frugal migration and maintenance of persistent identifiers. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Data Sci. ![In: Data Sci. 3(1), pp. 3-13, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Randi Vita, James A. Overton, Patrick Dunn, Kei-Hoi Cheung, Steven H. Kleinstein, Alessandro Sette, Bjoern Peters |
A structured model for immune exposures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Database J. Biol. Databases Curation ![In: Database J. Biol. Databases Curation 2020, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | James A. Overton, Randi Vita, Patrick Dunn, Julie G. Burel, Syed Ahmad Chan Bukhari, Kei-Hoi Cheung, Steven H. Kleinstein, Alexander D. Diehl, Bjoern Peters |
Reporting and connecting cell type names and gating definitions through ontologies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 20-S(5), pp. 259-264, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
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1 | Rebecca C. Jackson, James P. Balhoff, Eric Douglass, Nomi L. Harris, Christopher J. Mungall, James A. Overton |
ROBOT: A Tool for Automating Ontology Workflows. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 20(1), pp. 407:1-407:10, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
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1 | Randi Vita, Swapnil Mahajan, James A. Overton, Sandeep Kumar Dhanda, Sheridan Martini, Jason R. Cantrell, Daniel K. Wheeler, Alessandro Sette, Bjoern Peters |
The Immune Epitope Database (IEDB): 2018 update. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 47(Database-Issue), pp. D339-D343, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
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1 | Yongqun He, Zuoshuang Xiang, Jie Zheng 0001, Yu Lin, James A. Overton, Edison Ong |
The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Biomed. Semant. ![In: J. Biomed. Semant. 9(1), pp. 3:1-3:10, 2018. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
|
1 | Randi Vita, James A. Overton, Bjoern Peters |
Identification of errors in the IEDB using ontologies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Database J. Biol. Databases Curation ![In: Database J. Biol. Databases Curation 2018, pp. bay005, 2018. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
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1 | Randi Vita, James A. Overton, Christopher J. Mungall, Alessandro Sette, Bjoern Peters |
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Database J. Biol. Databases Curation ![In: Database J. Biol. Databases Curation 2018, pp. bax105, 2018. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
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1 | Rebecca Tauber, James P. Balhoff, Eric Douglass, Chris Mungall, James A. Overton |
Standardizing Ontology Workflows Using ROBOT. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICBO ![In: Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), Corvallis, Oregon, USA, August 7-10, 2018., 2018, CEUR-WS.org. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP BibTeX RDF |
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1 | Randi Vita, Bjoern Peters, James A. Overton, Kei-Hoi Cheung, Steven H. Kleinstein |
Formalizing the Representation of Immune Exposures for Human Immunology Studies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICBO ![In: Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), Corvallis, Oregon, USA, August 7-10, 2018., 2018, CEUR-WS.org. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP BibTeX RDF |
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1 | Randi Vita, James A. Overton, Alessandro Sette, Bjoern Peters |
Better living through ontologies at the Immune Epitope Database. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Database J. Biol. Databases Curation ![In: Database J. Biol. Databases Curation 2017, pp. bax014, 2017. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
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1 | Metin N. Gurcan, John Tomaszewski, James A. Overton, Scott Doyle, Alan Ruttenberg, Barry Smith 0001 |
Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Biomed. Informatics ![In: J. Biomed. Informatics 66, pp. 129-135, 2017. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
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1 | Gully A. Burns, Randi Vita, James A. Overton, Ward Fleri, Bjoern Peters |
Semantic Modeling for Accelerated Immune Epitope Database (IEDB) Biocuration. ![Search on Bibsonomy](Pics/bibsonomy.png) |
K-CAP Workshops ![In: Proceedings of Workshops and Tutorials of the 9th International Conference on Knowledge Capture (K-CAP2017), Austin, Texas, USA, December 4th, 2017., pp. 7-12, 2017, CEUR-WS.org. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP BibTeX RDF |
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1 | Randi Vita, James A. Overton, Emily Seymour, John Sidney, Jim Kaufman, Rebecca L. Tallmadge, Shirley Ellis, John Hammond, Geoff W. Butcher, Alessandro Sette, Bjoern Peters |
An ontology for major histocompatibility restriction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Biomed. Semant. ![In: J. Biomed. Semant. 7, pp. 1, 2016. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
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1 | Heiner Oberkampf, Sonja Zillner, James A. Overton, Bernhard Bauer, Alexander Cavallaro, Michael Uder, Matthias Hammon |
Semantic representation of reported measurements in radiology. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Medical Informatics Decis. Mak. ![In: BMC Medical Informatics Decis. Mak. 16, pp. 5, 2016. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
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1 | James A. Overton |
Humane OWL: RDF and OWL for Humans. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICBO/BioCreative ![In: Proceedings of the Joint International Conference on Biological Ontology and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016., 2016, CEUR-WS.org. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP BibTeX RDF |
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1 | Randi Vita, James A. Overton, Jason A. Greenbaum, Julia V. Ponomarenko, Jason D. Clark, Jason R. Cantrell, Daniel K. Wheeler, Joseph L. Gabbard, Deborah Hix, Alessandro Sette, Bjoern Peters |
The immune epitope database (IEDB) 3.0. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 43(Database-Issue), pp. 405-412, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
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1 | James A. Overton |
EDN-LD: A simple linked data tool. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICBO ![In: Proceedings of the International Conference on Biomedical Ontology, ICBO 2015, Lisbon, Portugal, July 27-30, 2015., 2015, CEUR-WS.org. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP BibTeX RDF |
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1 | James A. Overton, Heiko Dietze, Shahim Essaid, David Osumi-Sutherland, Christopher J. Mungall |
ROBOT: A command-line tool for ontology development. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICBO ![In: Proceedings of the International Conference on Biomedical Ontology, ICBO 2015, Lisbon, Portugal, July 27-30, 2015., 2015, CEUR-WS.org. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP BibTeX RDF |
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1 | Randi Vita, James A. Overton, Jason Greenbaum, Alessandro Sette, Björn Peters |
Query enhancement through the practical application of ontology: the IEDB and OBI. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Biomed. Semant. ![In: J. Biomed. Semant. 4(S-1), pp. S6, 2013. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP BibTeX RDF |
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1 | James A. Overton |
"Explain" in scientific discourse. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Synth. ![In: Synth. 190(8), pp. 1383-1405, 2013. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP DOI BibTeX RDF |
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1 | James A. Overton, Randi Vita, Jason Greenbaum, Heiko Dietze, Alessandro Sette, Bjoern Peters |
A Taxonomy for Immunologists. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICBO ![In: Proceedings of the 4th International Conference on Biomedical Ontology, ICBO 2013, Montreal, Canada, July 7-12, 2013., pp. 124, 2013, CEUR-WS.org. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP BibTeX RDF |
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1 | James A. Overton, Cesare Romagnoli, Rethy Chhem |
Open Biomedical Ontologies applied to prostate cancer. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Appl. Ontology ![In: Appl. Ontology 6(1), pp. 35-51, 2011. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
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1 | James A. Overton |
Philosophy, Ontology, and Scientific Explanation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICBO ![In: Proceedings of the 2nd International Conference on Biomedical Ontology, Buffalo, NY, USA, July 26-30, 2011, 2011, CEUR-WS.org. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP BibTeX RDF |
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