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Found 33 publication records. Showing 32 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Jarjapu Mahita, Brendan Ha, Anais Gambiez, Sharon L. Schendel, Haoyang Li, Kathryn M. Hastie, S. Moses Dennison, Kan Li, Natalia Kuzmina, Sivakumar Periasamy, Alexander Bukreyev, Jennifer E. Munt, Mary Osei-Twum, Caroline Atyeo, James A. Overton, Randi Vita, Hector Guzman-Orozco, Marcus Mendes, Mari Kojima, Peter J. Halfmann, Yoshihiro Kawaoka, Galit Alter, Luc Gagnon, Ralph S. Baric, Georgia D. Tomaras, Tim Germann, Daniel Bedinger, Jason A. Greenbaum, Erica Ollmann Saphire, Bjoern Peters |
Coronavirus Immunotherapeutic Consortium Database.  |
Database J. Biol. Databases Curation  |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler 0001, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall |
A Simple Standard for Sharing Ontological Mappings (SSSOM). |
Database J. Biol. Databases Curation |
2022 |
DBLP DOI BibTeX RDF |
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| 1 | Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland |
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. |
Database J. Biol. Databases Curation |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland |
Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies. |
CoRR |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Mélanie Courtot, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith 0001, Christian J. Stoeckert Jr., Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng 0001, Christopher J. Mungall, Bjoern Peters |
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. |
Database J. Biol. Databases Curation |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Randi Vita, Jie Zheng 0001, Rebecca C. Jackson, Damion M. Dooley, James A. Overton, Mark A. Miller, Daniel C. Berrios, Richard H. Scheuermann, Yongqun He, Hande Küçük-McGinty, Mathias Brochhausen, Aisyah Yu Lin, Sagar B. Jain, Marcus C. Chibucos, John Judkins, Michelle G. Giglio, Irene Y. Feng, Gully Burns, Matthew H. Brush, Bjoern Peters, Christian J. Stoeckert Jr. |
Standardization of assay representation in the Ontology for Biomedical Investigations. |
Database J. Biol. Databases Curation |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Lindy Edwards, Rebecca C. Jackson, James A. Overton, Randi Vita, Nina Blazeska, Bjoern Peters, Alessandro Sette |
An immunologically friendly classification of non-peptidic ligands. |
Database J. Biol. Databases Curation |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler 0001, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall |
A Simple Standard for Sharing Ontological Mappings (SSSOM). |
CoRR |
2021 |
DBLP BibTeX RDF |
|
| 1 | James A. Overton, Michael Cuffaro, Christopher J. Mungall |
String of PURLs - frugal migration and maintenance of persistent identifiers. |
Data Sci. |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Randi Vita, James A. Overton, Patrick Dunn, Kei-Hoi Cheung, Steven H. Kleinstein, Alessandro Sette, Bjoern Peters |
A structured model for immune exposures. |
Database J. Biol. Databases Curation |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | James A. Overton, Randi Vita, Patrick Dunn, Julie G. Burel, Syed Ahmad Chan Bukhari, Kei-Hoi Cheung, Steven H. Kleinstein, Alexander D. Diehl, Bjoern Peters |
Reporting and connecting cell type names and gating definitions through ontologies. |
BMC Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Rebecca C. Jackson, James P. Balhoff, Eric Douglass, Nomi L. Harris, Christopher J. Mungall, James A. Overton |
ROBOT: A Tool for Automating Ontology Workflows. |
BMC Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Randi Vita, Swapnil Mahajan, James A. Overton, Sandeep Kumar Dhanda, Sheridan Martini, Jason R. Cantrell, Daniel K. Wheeler, Alessandro Sette, Bjoern Peters |
The Immune Epitope Database (IEDB): 2018 update. |
Nucleic Acids Res. |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Yongqun He, Zuoshuang Xiang, Jie Zheng 0001, Yu Lin, James A. Overton, Edison Ong |
The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability. |
J. Biomed. Semant. |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Randi Vita, James A. Overton, Bjoern Peters |
Identification of errors in the IEDB using ontologies. |
Database J. Biol. Databases Curation |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Randi Vita, James A. Overton, Christopher J. Mungall, Alessandro Sette, Bjoern Peters |
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. |
Database J. Biol. Databases Curation |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Rebecca Tauber, James P. Balhoff, Eric Douglass, Chris Mungall, James A. Overton |
Standardizing Ontology Workflows Using ROBOT. |
ICBO |
2018 |
DBLP BibTeX RDF |
|
| 1 | Randi Vita, Bjoern Peters, James A. Overton, Kei-Hoi Cheung, Steven H. Kleinstein |
Formalizing the Representation of Immune Exposures for Human Immunology Studies. |
ICBO |
2018 |
DBLP BibTeX RDF |
|
| 1 | Randi Vita, James A. Overton, Alessandro Sette, Bjoern Peters |
Better living through ontologies at the Immune Epitope Database. |
Database J. Biol. Databases Curation |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Metin N. Gurcan, John Tomaszewski, James A. Overton, Scott Doyle, Alan Ruttenberg, Barry Smith 0001 |
Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem. |
J. Biomed. Informatics |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Gully A. Burns, Randi Vita, James A. Overton, Ward Fleri, Bjoern Peters |
Semantic Modeling for Accelerated Immune Epitope Database (IEDB) Biocuration. |
K-CAP Workshops |
2017 |
DBLP BibTeX RDF |
|
| 1 | Randi Vita, James A. Overton, Emily Seymour, John Sidney, Jim Kaufman, Rebecca L. Tallmadge, Shirley Ellis, John Hammond, Geoff W. Butcher, Alessandro Sette, Bjoern Peters |
An ontology for major histocompatibility restriction. |
J. Biomed. Semant. |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Heiner Oberkampf, Sonja Zillner, James A. Overton, Bernhard Bauer, Alexander Cavallaro, Michael Uder, Matthias Hammon |
Semantic representation of reported measurements in radiology. |
BMC Medical Informatics Decis. Mak. |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | James A. Overton |
Humane OWL: RDF and OWL for Humans. |
ICBO/BioCreative |
2016 |
DBLP BibTeX RDF |
|
| 1 | Randi Vita, James A. Overton, Jason A. Greenbaum, Julia V. Ponomarenko, Jason D. Clark, Jason R. Cantrell, Daniel K. Wheeler, Joseph L. Gabbard, Deborah Hix, Alessandro Sette, Bjoern Peters |
The immune epitope database (IEDB) 3.0. |
Nucleic Acids Res. |
2015 |
DBLP DOI BibTeX RDF |
|
| 1 | James A. Overton |
EDN-LD: A simple linked data tool. |
ICBO |
2015 |
DBLP BibTeX RDF |
|
| 1 | James A. Overton, Heiko Dietze, Shahim Essaid, David Osumi-Sutherland, Christopher J. Mungall |
ROBOT: A command-line tool for ontology development. |
ICBO |
2015 |
DBLP BibTeX RDF |
|
| 1 | Randi Vita, James A. Overton, Jason Greenbaum, Alessandro Sette, Björn Peters |
Query enhancement through the practical application of ontology: the IEDB and OBI. |
J. Biomed. Semant. |
2013 |
DBLP BibTeX RDF |
|
| 1 | James A. Overton |
"Explain" in scientific discourse. |
Synth. |
2013 |
DBLP DOI BibTeX RDF |
|
| 1 | James A. Overton, Randi Vita, Jason Greenbaum, Heiko Dietze, Alessandro Sette, Bjoern Peters |
A Taxonomy for Immunologists. |
ICBO |
2013 |
DBLP BibTeX RDF |
|
| 1 | James A. Overton, Cesare Romagnoli, Rethy Chhem |
Open Biomedical Ontologies applied to prostate cancer. |
Appl. Ontology |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | James A. Overton |
Philosophy, Ontology, and Scientific Explanation. |
ICBO |
2011 |
DBLP BibTeX RDF |
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