Search results for "hydrophobicity"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
80	Said Hassan Ahmed, Tor Flå	Estimation of Evolutionary Average Hydrophobicity Profile from a Family of Protein Sequences.	PRIB	2007	DBLP DOI BibTeX RDF
65	Wei Zhong, Gulsah Altun, Xinmin Tian, Robert W. Harrison, Phang C. Tai, Yi Pan 0001	Parallel protein secondary structure prediction schemes using Pthread and OpenMP over hyper-threading technology.	J. Supercomput.	2007	DBLP DOI BibTeX RDF	DBNN (Denoeux Belief Neural Network), MPI (Message Passing Interface), Hyper-threading, BLOSUM62 matrix, Hydrophobicity matrix, PSSM (Position Specific Scoring Matrix), Neural networks, Parallel architecture, OpenMP, Speedup, Pthread, Protein secondary structure prediction
54	Yoojin Chung, Gyeong-Min Kim, Young-Sup Hwang, Hoon Park	Predicting Protein-Protein Interactions from One Feature Using SVM.	IEA/AIE	2004	DBLP DOI BibTeX RDF
51	Saharuddin Bin Mohamad, Ai Ling Ong, Raja Farhana Khairuddin, Adiratna Mat Ripen	A Combination of Evolutionary Trace Method, Molecular Surface Accessibility and Hydrophobicity Analysis to Design a High Hydrophobicity Laccase.	Silico Biol.	2010	DBLP DOI BibTeX RDF
46	Axel J. Soto, Rocío L. Cecchini, Gustavo E. Vazquez, Ignacio Ponzoni	A Wrapper-Based Feature Selection Method for ADMET Prediction Using Evolutionary Computing.	EvoBIO	2008	DBLP DOI BibTeX RDF	hydrophobicity, Genetic Algorithms, Feature Selection, QSAR
46	Jürgen Brickmann, Wolfgang Heiden, Horst Vollhardt, Carl-Dieter Zachmann	New man-machine communication strategies in molecular modelling.	HICSS (5)	1995	DBLP DOI BibTeX RDF	man-machine communication strategies, intermolecular interactions, attractive force, repulsive force, local hydrophobicity, surface topography, surface flexibility, molecular recognition, model scenarios, user interfaces, computer graphics, computer graphics, texture mapping, interactive systems, biology computing, chemistry, chemistry, correlation analysis, molecular modelling, chemistry computing, molecular surfaces, molecular surface, surface roughness, color coding, interactive computer graphics, molecular biophysics
36	Mohamed Zerara, Jürgen Brickmann, Robert Kretschmer, Thomas E. Exner	Parameterization of an empirical model for the prediction of n -octanol, alkane and cyclohexane/water as well as brain/blood partition coefficients.	J. Comput. Aided Mol. Des.	2009	DBLP DOI BibTeX RDF	Solvation and transfer free energies, Hydrophobic effect, Hydrophobic interaction, Brain/blood barrier, Octanol/water, Alkane/water, Cyclohexane/water, LogP
36	Rehab M. Duwairi, Amal Kassawneh	A framework for predicting proteins 3D structures.	AICCSA	2008	DBLP DOI BibTeX RDF
36	Mudassir Fayyaz, Adnan Mujahid, Asifullah Khan, Tae-Sun Choi, Nadeem Iqbal	G-protein Coupled Receptor Subfamilies Prediction Based on Nearest Neighbor Approach.	BIBE	2007	DBLP DOI BibTeX RDF
36	Mudassir Fayyaz, Asifullah Khan, Adnan Mujahid, Alex Kavokin	Using Multi Level Nearest Neighbor Classifiers for G-Protein Coupled Receptor Sub-families Prediction.	ISBRA	2007	DBLP DOI BibTeX RDF	Multilevel classification, Fast Fourier Transform, Nearest Neighbor Classifier, G-Proteins Coupled Receptors
28	Lan Huang, Guixia Liu, Rongxing Wang, Bin Yang, Chunguang Zhou	Improved Clonal Selection Algorithm for Protein Contact Map Prediction.	NCM	2009	DBLP DOI BibTeX RDF	protein contact map, colonal selection algorithm, amino acids' hydrophobicity, immune algorithm
28	Huiyun Yang, Ouyan Shi, Xin Tian 0004	Combining Physico-chemical Properties with PSSM for Protein Secondary Structure Prediction Using BP Neural Network.	BMEI (1)	2008	DBLP DOI BibTeX RDF	hydrophobicity, isoelectric point, PSSM, prediction, BP neural network, protein secondary structure
26	Mansoor Asif, Khaled Y. Al Soufi, Umer Amir Khan, Luai M. Alhems	Intensification of Electric Field Stresses in Field Aged 380-kV Composite Insulators Due to Loss of Hydrophobicity.	IEEE Access	2024	DBLP DOI BibTeX RDF
26	Shengwei Quan, Shibin Gao, Jie Li, Lijun Zhou, Zhixin Yang, Dongyang Wang, Huiling Tang	Evaluation Method of Surface Hydrophobicity Class of On-Board Cable Terminal Based on MSRCR-SPA-ResNet.	IEEE Trans. Instrum. Meas.	2023	DBLP DOI BibTeX RDF
26	Nitin Kumar Singh 0003, Pratyasha Bhardwaj, Mithun Radhakrishna	Hydrophobicity─A Single Parameter for the Accurate Prediction of Disordered Regions in Proteins.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
26	Javier Vázquez, Tiziana Ginex, Albert Herrero, Christophe Morisseau, Bruce D. Hammock, F. Javier Luque	Screening and Biological Evaluation of Soluble Epoxide Hydrolase Inhibitors: Assessing the Role of Hydrophobicity in the Pharmacophore-Guided Search of Novel Hits.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
26	Ana Rita Oliveira, Henrique M. A. Costa, Efthymia Ramou, Susana I. C. J. Palma, Ana Cecília Roque	Effect of Polymer Hydrophobicity in the Performance of Hybrid Gel Gas Sensors for E-Noses.	Sensors	2023	DBLP DOI BibTeX RDF
26	Soumya Chatterjee 0001, Sayanjit Singha Roy, Arpan Chatterjee, Biswarup Ganguly, Subho Paul	Recognition of Hydrophobicity Class of Polymeric Insulators Employing Residual Morphological Neural Network and Granulometry-Based Image Analysis.	IEEE Trans. Instrum. Meas.	2022	DBLP DOI BibTeX RDF
26	Mateusz Banach	Symmetrization in the Calculation Pipeline of Gauss Function-Based Modeling of Hydrophobicity in Protein Structures.	Symmetry	2022	DBLP DOI BibTeX RDF
26	Carla F. Sousa, Mohamed A. M. Kamal, Robert Richter, Kalanika Elamaldeniya, Rolf W. Hartmann, Martin Empting, Claus-Michael Lehr, Olga V. Kalinina	Modeling the Effect of Hydrophobicity on the Passive Permeation of Solutes across a Bacterial Model Membrane.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
26	Arnav Solanki, Marc D. Riedel, James L. Cornette, Julia Udell, Ishaan Koratkar, George Vasmatzis	The Role of Hydrophobicity in Peptide-MHC Binding.	ISMCO	2021	DBLP DOI BibTeX RDF
26	Jikai Bi, Yanpeng Hao, Lin Yang, Yao Zheng, Licheng Li	Impact of Hydrophobicity on Wetting Characteristics of Composite Insulators.	IEEE Access	2020	DBLP DOI BibTeX RDF
26	Jacques Demongeot, Hervé Seligmann	Deamination gradients within codons after 12 position swap predict amino acid hydrophobicity and parallel β-sheet conformational preference.	Biosyst.	2020	DBLP DOI BibTeX RDF
26	Bashir O. Betar, Mohammed Abdulhakim AlSaadi, Zaira Zaman Chowdhury, Mohamed Kheireddine Aroua, Farouq Sabri Mjalli, Kaharudin Dimyati, M. H. D. Nour Hindia, Fawzi M. Elfghi, Yehya M. Ahmed, Hazim F. Abbas	Bimetallic Mo-Fe Co-Catalyst-Based Nano-Carbon Impregnated on PAC for Optimum Super-Hydrophobicity.	Symmetry	2020	DBLP DOI BibTeX RDF
26	Christos-Christodoulos A. Kokalis, Thanos Tasakos, Vassiliki T. Kontargyri, Giorgos Siolas, Ioannis F. Gonos	Hydrophobicity classification of composite insulators based on convolutional neural networks.	Eng. Appl. Artif. Intell.	2020	DBLP DOI BibTeX RDF
26	Xinbo Huang, Tingting Nie, Ye Zhang 0012, Xiaoling Zhang 0005	Study on Hydrophobicity Detection of Composite Insulators of Transmission Lines by Image Analysis.	IEEE Access	2019	DBLP DOI BibTeX RDF
26	Irena Roterman, Dawid Dulak, Malgorzata Gadzala, Mateusz Banach, Leszek Konieczny	Structural analysis of the Aβ(11-42) amyloid fibril based on hydrophobicity distribution.	J. Comput. Aided Mol. Des.	2019	DBLP DOI BibTeX RDF
26	Jiankun Zhao, Mingzuo Xie, Jianli Zhao, Yu Wang 0076, Lin Mu, Lei Lan	Research on RTV Vulcanization Performance Based on Hydrophobicity, SEM, FTIR and TGA.	ICITEE	2019	DBLP DOI BibTeX RDF
26	Ya-Shen Yu, Lih-Hwa Kuo, Mu-Chien Wu, Jong-Shinn Wu, Chia-Hung Dylan Tsai	A Novel Fabrication of PDMS Chip using Atmospheric Pressure Plasma Jet: Hydrophobicity Modification and Feasibility Test.	IROS	2018	DBLP DOI BibTeX RDF
26	Palash Mishra, Ramanujam Sarathi, Noboru Yoshimura	Understanding Hydrophobicity Recovery of Silicone Rubber Material Post Corona Ageing.	ICIIS	2018	DBLP DOI BibTeX RDF
26	Yong Liu, Shaoxun Tang, Carlos Fernandez-Lozano, Cristian R. Munteanu, Alejandro Pazos, Yi-zun Yu, Zhiliang Tan, Humberto González Díaz	Experimental study and Random Forest prediction model of microbiome cell surface hydrophobicity.	Expert Syst. Appl.	2017	DBLP DOI BibTeX RDF
26	Adelene Y. L. Sim, Chandra Verma	How does a hydrocarbon staple affect peptide hydrophobicity?	J. Comput. Chem.	2015	DBLP DOI BibTeX RDF
26	Amir Pakdel, Takao Mori, Yoshio Bando, Dmitri Golberg	Interface engineering of bio-inspired Boron nitride nano-architectures toward controllable hydrophobicity/hydrophilicity.	NEMS	2015	DBLP DOI BibTeX RDF
26	Song-Ho Chong, Sihyun Ham	Site-directed analysis on protein hydrophobicity.	J. Comput. Chem.	2014	DBLP DOI BibTeX RDF
26	Mohamed Amine Zorgani, Kevin Patron, Mickaël Desvaux	New insight in the structural features of haloadaptation in α-amylases from halophilic Archaea following homology modeling strategy: folded and stable conformation maintained through low hydrophobicity and highly negative charged surface.	J. Comput. Aided Mol. Des.	2014	DBLP DOI BibTeX RDF
26	Geetika Silakari Pandey, R. C. Jain	Computational impact of hydrophobicity in protein stability.	CoRR	2013	DBLP BibTeX RDF
26	Kinga Salapa, Barbara Kalinowska, Tomasz Jadczyk, Irena Roterman	Measurement of Hydrophobicity Distribution in Proteins - Complete Redundant Protein Data Bank.	Bio Algorithms Med Syst.	2012	DBLP DOI BibTeX RDF
26	Eryk Ciepiela, Tomasz Jadczyk, Daniel Harezlak, Marek Kasztelnik, Piotr Nowakowski, Grzegorz Dyk, Maciej Malawski, Marian Bubak, Irena Roterman	Computations of Protein Hydrophobicity Profile as Virtual Experiment in Gridspace Virtual Laboratory.	Bio Algorithms Med Syst.	2012	DBLP DOI BibTeX RDF
26	Kinga Salapa, Barbara Kalinowska, Tomasz Jadczyk, Irena Roterman	Measurement of Hydrophobicity Distribution in Proteins - Non-redundant Protein Data Bank.	Bio Algorithms Med Syst.	2012	DBLP DOI BibTeX RDF
26	Chao Liang, Wenming Yang, Qingmin Liao	Water droplets segmentation for hydrophobicity classification.	ICASSP	2012	DBLP DOI BibTeX RDF
26	Oruganty Krishnadev, Narayanaswamy Srinivasan	AlignHUSH : Alignment of HMMs Using Structure and Hydrophobicity information.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
26	Sheenal Srivastava, Yumi Patton, David W. Fisher, Graham Raymond Wood	Cotranslational Protein Folding and Terminus Hydrophobicity.	Adv. Bioinformatics	2011	DBLP DOI BibTeX RDF
26	Steve Hodgkinson, Wolfgang P. Kaschka	Patterns of Hydrophobicity Found in the First and Second transmembrane Domains of solute Transporters Suggest a Possible Role in Nascent protein Anchoring and Organization.	J. Bioinform. Comput. Biol.	2011	DBLP DOI BibTeX RDF
26	Giuseppe Evangelista, Giovanni Minervini, Fabio Polticelli, Maciej Malawski, Tomasz Szepieniec, Lukasz Flis, Katarzyna Prymula, Marek Kochanczyk, Ewa Matczynska, Zdzislaw Wisniowski, Kinga Salapa, Mateusz Banach, Irena Roterman	Ab initio protein structure prediction - the hydrophobicity distribution analysis.	Bio Algorithms Med Syst.	2011	DBLP BibTeX RDF
26	Arren Bar-Even, Elad Noor, Avi I. Flamholz, Joerg M. Buescher, Ron Milo	Hydrophobicity and Charge Shape Cellular Metabolite Concentrations.	PLoS Comput. Biol.	2011	DBLP DOI BibTeX RDF
26	Arif Jaya, Hamzah Berahim, Tumiran, Rochmadi	The hydrophobicity improvement of high voltage insulator based on epoxy polysiloxane and rice husk ash compound.	ICEEI	2011	DBLP DOI BibTeX RDF
26	R. Vinodhini, M. S. Vijaya	Label Sequence Learning Based Protein Secondary Structure Prediction Using Hydrophobicity Scales.	SocProS (2)	2011	DBLP DOI BibTeX RDF
26	Lukasz Proszek, Irena Roterman	Automatic Classification of Protein Structures based on Genetic Algorithm alignment of the Hydrophobicity Difference Profiles obtained from the Fuzzy Oil Drop Model.	Bio Algorithms Med Syst.	2010	DBLP BibTeX RDF
26	Ibrahim Mahmoud El-Henawy, Ahmed H. Kamal, Hisham Al-Shishiny, Haitham Gamal	A Central-3-Residues-Based Clustering Approach for Studying the Effect of Hydrophobicity on Protein Backbone Angles.	Egypt. Comput. Sci. J.	2009	DBLP BibTeX RDF
26	Andrzej Galat	On Transversal Hydrophobicity of Some Proteins and Their Modules.	J. Chem. Inf. Model.	2009	DBLP DOI BibTeX RDF
26	Ilias K. Kitsas, Leontios J. Hadjileontiadis, Stavros M. Panas	Transmembrane helix prediction in proteins using hydrophobicity properties and higher-order statistics.	Comput. Biol. Medicine	2008	DBLP DOI BibTeX RDF
26	Nikhil Ranjan Pal, Somitra Kumar Sanadhya, Animesh Sharma	Computation of consensus hydrophobicity scales with self-organizing maps and fuzzy clustering along with applications to protein fold prediction.	Neural Parallel Sci. Comput.	2007	DBLP BibTeX RDF
26	Leszek Konieczny, Michal Brylinski, Irena Roterman	Gauss-Function-Based Model of Hydrophobicity Density in Proteins.	Silico Biol.	2006	DBLP BibTeX RDF
26	Moti Zviling, Hadas Leonov, Isaiah T. Arkin	Genetic algorithm-based optimization of hydrophobicity tables.	Bioinform.	2005	DBLP DOI BibTeX RDF
26	Scott F. Smith 0002	Using Hydrophobicity Correlation Measures for Protein Family Classification.	METMBS	2005	DBLP BibTeX RDF
26	Robert Jäger, Stefan M. Kast, Jürgen Brickmann	Parametrization Strategy for the MolFESD Concept: Quantitative Surface Representation of Local Hydrophobicity.	J. Chem. Inf. Comput. Sci.	2003	DBLP DOI BibTeX RDF
26	Ki H. Kim	Thermodynamic aspects of hydrophobicity and biological QSAR.	J. Comput. Aided Mol. Des.	2001	DBLP DOI BibTeX RDF
26	Luis Fernández Pacios	Distinct Molecular Surfaces and Hydrophobicity of Amino Acid Residues in Proteins.	J. Chem. Inf. Comput. Sci.	2001	DBLP DOI BibTeX RDF
26	Robert Jäger, K. Friedemann Schmidt, Bernd Schilling, Jürgen Brickmann	Localization and quantification of hydrophobicity: The molecular free energy density (MolFESD) concept and its application to sweetness recognition.	J. Comput. Aided Mol. Des.	2000	DBLP DOI BibTeX RDF
26	Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Sridhar Hannenhalli, Martin Farach, S. Muthukrishnan 0001, Steven Skiena	Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model.	J. Comput. Biol.	1997	DBLP DOI BibTeX RDF
26	Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, Steven Skiena	Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model.	SODA	1997	DBLP BibTeX RDF
26	Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, S. Muthukrishnan 0001, Steven Skiena	Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model.	RECOMB	1997	DBLP DOI BibTeX RDF
26	W. Schmidt	Phylogeny reconstruction from hydrophobicity profiles of Proteins: An Information-theoretic approach.	German Conference on Bioinformatics	1997	DBLP BibTeX RDF
26	Ricardo L. Mancera	Towards an understanding of the molecular basis of hydrophobicity.	J. Comput. Aided Mol. Des.	1996	DBLP DOI BibTeX RDF
26	Paul Pixner, Wolfgang Heiden, Hendrik Merx, Gerd Moeckel, Andreas Möller, Jürgen Brickmann	Empirical Method for the Quantification and Localization of Molecular Hydrophobicity.	J. Chem. Inf. Comput. Sci.	1994	DBLP DOI BibTeX RDF
18	Rojan Shrestha, Jisu Kim, Kyungsook Han	Prediction of RNA-Binding Residues in Proteins Using the Interaction Propensities of Amino Acids and Nucleotides.	ICIC (1)	2008	DBLP DOI BibTeX RDF	RNA-binding residues, protein-RNA interactions, support vector machine
18	Ángel Monteagudo, José Santos Reyes	Simulated Evolution of the Adaptability of the Genetic Code Using Genetic Algorithms.	IWINAC (1)	2007	DBLP DOI BibTeX RDF
18	Yoshihiro Taguchi 0001, M. Michael Gromiha	Protein Fold Recognition Based Upon the Amino Acid Occurrence.	PRIB	2007	DBLP DOI BibTeX RDF
18	Susan Jones, Yoichi Mukarami	Patch Prediction of Protein Interaction Sites: Validation of a Scoring Function for an Online Server.	BIRD	2007	DBLP DOI BibTeX RDF	homodimer, acessible surface area, prediction, protein-protein interaction, surface patch
18	Feihong Wu, Fadi Towfic, Drena Dobbs, Vasant G. Honavar	Analysis of Protein Protein Dimeric Interfaces.	BIBM	2007	DBLP DOI BibTeX RDF
18	Jiansheng Wu, Hongtao Wu, Hongde Liu, Haoyan Zhou, Xiao Sun 0006	Support Vector Machine for Prediction of DNA-Binding Domains in Protein-DNA Complexes.	LSMS (2)	2007	DBLP DOI BibTeX RDF
18	Denise Fukumi Tsunoda, Heitor Silvério Lopes	Automatic motif discovery in an enzyme database using a genetic algorithm-based approach.	Soft Comput.	2006	DBLP DOI BibTeX RDF
18	Rolf Backofen, Sebastian Will	A Constraint-Based Approach to Fast and Exact Structure Prediction in Three-Dimensional Protein Models.	Constraints An Int. J.	2006	DBLP DOI BibTeX RDF	Face-centered cubic lattice, Constraint programming, Protein structure prediction, HP-model
18	Yoshihiro Sasaki, Yuka Shioyama, Junichi Kikuchi, Wen-Jie Tian, Sheng-Di Fan	Nano Sensory Device utilizing Intermolecular Communication on Lipid Membrane.	PerCom Workshops	2006	DBLP DOI BibTeX RDF
18	Michael Stout, Jaume Bacardit, Jonathan D. Hirst, Natalio Krasnogor, Jacek Blazewicz	From HP Lattice Models to Real Proteins: Coordination Number Prediction Using Learning Classifier Systems.	EvoWorkshops	2006	DBLP DOI BibTeX RDF
18	Cao Wei, Kentaro Shimizu	Identification of GPI-(like)-Anchored Proteins by Using SVM.	IMSCCS (2)	2006	DBLP DOI BibTeX RDF
18	Yoojin Chung, Sang-Young Cho, Sung Y. Shin	Parallel Prediction of Protein-Protein Interactions Using Proximal SVM.	RSFDGrC (2)	2005	DBLP DOI BibTeX RDF
18	Thang Nguyen Bui, Gnanasekaran Sundarraj	An efficient genetic algorithm for predicting protein tertiary structures in the 2D HP model.	GECCO	2005	DBLP DOI BibTeX RDF	2D HP model, protein folding problem, genetic algorithm
18	G. Sampath, James TenEyck	Non-occurring and rare quads in PDB and translated introns from XPro with possible applications in nanostructure design.	CSB Workshops	2005	DBLP DOI BibTeX RDF
18	Robert L. Bryant, Herbert Edelsbrunner, Patrice Koehl, Michael Levitt	The Area Derivative of a Space-Filling Diagram.	Discret. Comput. Geom.	2004	DBLP DOI BibTeX RDF
18	Geneviève Gaucher, Elvire Fournier, Dorothée Le Garrec, Mohamed Nabil Khalid, Didier Hoarau, Vinayak Sant, Jean-Christophe Leroux	Delivery of Hydrophobic Drugs through Self-Assembling Nanostructure.	ICMENS	2004	DBLP DOI BibTeX RDF
18	Umar Syed, Golan Yona	Using a mixture of probabilistic decision trees for direct prediction of protein function.	RECOMB	2003	DBLP DOI BibTeX RDF	functional prediction, sequence-function relationships, decision trees
18	Rolf Backofen, Sebastian Will	A Constraint-Based Approach to Structure Prediction for Simplified Protein Models That Outperforms Other Existing Methods.	ICLP	2003	DBLP DOI BibTeX RDF
18	Krishna Gopalakrishnan, Kayvan Najarian	Prediction of Protein Function Using Signal Processing of Biochemical Properties.	CSB	2003	DBLP DOI BibTeX RDF
18	Sean E. Kirkwood, Mohammad R. Shadnam, Robert Fedosejevs, Alidad Amirfazi	Direct Writing of Self-Assembled Monolayers on Gold Coated Substrates Using a CW Argon Laser.	ICMENS	2003	DBLP DOI BibTeX RDF
18	Nikhil R. Pal, Debrup Chakraborty	Some New Features for Protein Fold Prediction.	ICANN	2003	DBLP DOI BibTeX RDF
18	Olaf Weiss, Andreas Ziehe, Hanspeter Herzel	Optimizing Property Codes in Protein Data Reveals Structural Characteristics.	ICANN	2003	DBLP DOI BibTeX RDF