Search results for "duplications"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
22	Laurent Bulteau, Guillaume Fertin, Christian Komusiewicz, Irena Rusu	A Fixed-Parameter Algorithm for Minimum Common String Partition with Few Duplications.	WABI	2013	DBLP DOI BibTeX RDF
22	Tibor Bakota	Evaluating the effect of code duplications on software maintainability		2013	RDF
22	Zhi-Zhong Chen, Fei Deng, Lusheng Wang 0001	Simultaneous Identification of Duplications, Losses, and Lateral Gene Transfers.	IEEE ACM Trans. Comput. Biol. Bioinform.	2012	DBLP DOI BibTeX RDF
22	Eric Audemard, Thomas Schiex, Thomas Faraut	Detecting long tandem duplications in genomic sequences.	BMC Bioinform.	2012	DBLP DOI BibTeX RDF
22	Maureen Stolzer, Han Lai, Minli Xu, Deepa Sathaye, Benjamin Vernot, Dannie Durand	Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees.	Bioinform.	2012	DBLP DOI BibTeX RDF
22	Valerio Freschi, Alessandro Bogliolo, Arcangelo Liso	Genome-wide computational approach for the prediction of duplications generating protein localization signals.	Comput. Biol. Medicine	2012	DBLP DOI BibTeX RDF
22	Hui Liu 0003, Zhendong Niu, Zhiyi Ma, Weizhong Shao	Suffix tree-based approach to detecting duplications in sequence diagrams.	IET Softw.	2011	DBLP DOI BibTeX RDF
22	Ali Tofigh, Michael T. Hallett, Jens Lagergren	Simultaneous Identification of Duplications and Lateral Gene Transfers.	IEEE ACM Trans. Comput. Biol. Bioinform.	2011	DBLP DOI BibTeX RDF
22	Mahdi Belcaid, Anne Bergeron, Guylaine Poisson	The evolution of the tape measure protein: units, duplications and losses.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
22	Pawel Górecki 0001, J. Gordon Burleigh, Oliver Eulenstein	Maximum likelihood models and algorithms for gene tree evolution with duplications and losses.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
22	Yu Lin 0001, Bernard M. E. Moret	A New Genomic Evolutionary Model for Rearrangements, Duplications, and Losses that Applies across Eukaryotes and Prokaryotes.	J. Comput. Biol.	2011	DBLP DOI BibTeX RDF
22	Tamar Pinhas, Dekel Tsur, Shay Zakov, Michal Ziv-Ukelson	Edit Distance with Duplications and Contractions Revisited.	CPM	2011	DBLP DOI BibTeX RDF
22	Eddy Taillefer, Jonathan Miller 0002	Algebraic length distribution of sequence duplications in whole genomes.	ICNC	2011	DBLP DOI BibTeX RDF
22	Louxin Zhang, Yen Kaow Ng, Taoyang Wu, Yu Zheng 0018	Network model and efficient method for detecting relative duplications or horizontal gene transfers.	ICCABS	2011	DBLP DOI BibTeX RDF
22	Inseong Song, Wanoh Yoon, Eunmee Jang, Sangbang Choi	Task Scheduling Algorithm with Minimal Redundant Duplications in Homogeneous Multiprocessor System.	FGIT-GDC	2011	DBLP DOI BibTeX RDF
22	Max A. Alekseyev, Qian Peng, Pavel A. Pevzner, Glenn Tesler	Decoding the Genomic Architecture of Mammalian and Plant Genomes: Synteny Blocks and Large-scale Duplications.	Commun. Inf. Syst.	2010	DBLP DOI BibTeX RDF
22	Crystal L. Kahn, Shay Mozes, Benjamin J. Raphael	Efficient algorithms for analyzing segmental duplications with deletions and inversions in genomes.	Algorithms Mol. Biol.	2010	DBLP DOI BibTeX RDF
22	Guanqun Shi, Liqing Zhang 0002, Tao Jiang 0001	MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
22	Martin Bader	Genome rearrangements with duplications.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
22	Yu Lin 0001, Vaibhav Rajan, Krister M. Swenson, Bernard M. E. Moret	Estimating true evolutionary distances under rearrangements, duplications, and losses.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
22	Abanish Singh, Umeshkumar Keswani, David Levine, Cédric Feschotte, Nikola Stojanovic	An algorithm for the reconstruction of consensus sequences of ancient segmental duplications and transposon copies in eukaryotic genomes.	Int. J. Bioinform. Res. Appl.	2010	DBLP DOI BibTeX RDF
22	Crystal L. Kahn, Borislav H. Hristov, Benjamin J. Raphael	Parsimony and likelihood reconstruction of human segmental duplications.	Bioinform.	2010	DBLP DOI BibTeX RDF
22	Adam Kirsch, Eleni Drinea	Directly lower bounding the information capacity for channels with I.I.D.deletions and duplications.	IEEE Trans. Inf. Theory	2010	DBLP DOI BibTeX RDF
22	Yu Lin 0001, Bernard M. E. Moret	A New Genomic Evolutionary Model for Rearrangements, Duplications, and Losses That Applies across Eukaryotes and Prokaryotes.	RECOMB-CG	2010	DBLP DOI BibTeX RDF
22	Jean-Philippe Doyon, Céline Scornavacca, K. Yu. Gorbunov, Gergely J. Szöllosi, Vincent Ranwez, Vincent Berry	An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers.	RECOMB-CG	2010	DBLP DOI BibTeX RDF
22	Martin Bader	Sorting by reversals, block interchanges, tandem duplications, and deletions.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
22	Sophia Yancopoulos, Richard Friedberg	DCJ Path Formulation for Genome Transformations which Include Insertions, Deletions, and Duplications.	J. Comput. Biol.	2009	DBLP DOI BibTeX RDF
22	Crystal L. Kahn, Benjamin J. Raphael	A Parsimony Approach to Analysis of Human Segmental Duplications.	Pacific Symposium on Biocomputing	2009	DBLP BibTeX RDF
22	Kwangsik Shin, MyongJin Cha, MunSuck Jang, JinHa Jung, Wanoh Yoon, Sangbang Choi	Task scheduling algorithm using minimized duplications in homogeneous systems.	J. Parallel Distributed Comput.	2008	DBLP DOI BibTeX RDF
22	Krishna R. Kalari, Thomas L. Casavant, Todd E. Scheetz	A knowledge-based approach to predict intragenic deletions or duplications.	Bioinform.	2008	DBLP DOI BibTeX RDF
22	Jian Ma 0004, Aakrosh Ratan, Brian J. Raney, Bernard B. Suh, Louxin Zhang, Webb Miller, David Haussler	DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications.	J. Comput. Biol.	2008	DBLP DOI BibTeX RDF
22	J. Gordon Burleigh, Mukul S. Bansal, André Wehe, Oliver Eulenstein	Locating Multiple Gene Duplications through Reconciled Trees.	RECOMB	2008	DBLP DOI BibTeX RDF
22	Sophia Yancopoulos, Richard Friedberg	Sorting Genomes with Insertions, Deletions and Duplications by DCJ.	RECOMB-CG	2008	DBLP DOI BibTeX RDF
22	Crystal L. Kahn, Benjamin J. Raphael	Analysis of segmental duplications via duplication distance.	ECCB	2008	DBLP DOI BibTeX RDF
22	Guillaume Blin, Cédric Chauve, Guillaume Fertin, Romeo Rizzi, Stéphane Vialette	Comparing Genomes with Duplications: A Computational Complexity Point of View.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF	maximum adjacency disruption number, summed adjacency disruption number, computational complexity, Comparative genomics, common intervals
22	V. Y. Popov	Multiple genome rearrangement by swaps and by element duplications.	Theor. Comput. Sci.	2007	DBLP DOI BibTeX RDF
22	Max A. Alekseyev, Pavel A. Pevzner	Whole Genome Duplications and Contracted Breakpoint Graphs.	SIAM J. Comput.	2007	DBLP DOI BibTeX RDF
22	Max A. Alekseyev, Pavel A. Pevzner	Whole genome duplications, multi-break rearrangements, and genome halving problem.	SODA	2007	DBLP BibTeX RDF
22	Eleni Drinea, Adam Kirsch	Directly Lower Bounding the Information Capacity for Channels with I.I.D. Deletions and Duplications.	ISIT	2007	DBLP DOI BibTeX RDF
22	Md. Khayrul Bashar, Keiji Noda, Noboru Ohnishi, Hiroaki Kudo, Tetsuya Matsumoto, Yoshinori Takeuchi	Wavelet-Based Multiresolution Features for Detecting Duplications in Images.	MVA	2007	DBLP BibTeX RDF
22	Chin Ching Chiu, Chung-Hsien Hsu, Yi-Shiung Yeh	A genetic algorithm for reliability-oriented task assignment with k~ duplications in distributed systems.	IEEE Trans. Reliab.	2006	DBLP DOI BibTeX RDF
22	Minmei Hou, Piotr Berman, Louxin Zhang, Webb Miller	Controlling Size When Aligning Multiple Genomic Sequences with Duplications.	WABI	2006	DBLP DOI BibTeX RDF
22	Brian J. Haas, Arthur L. Delcher, Jennifer R. Wortman, Steven Salzberg	DAGchainer: a tool for mining segmental genome duplications and synteny.	Bioinform.	2004	DBLP DOI BibTeX RDF
22	Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad	Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution.	RECOMB	2004	DBLP DOI BibTeX RDF	gene tree, orthology, algorithms, bayesian analysis, reconciliation
22	Li-Ching Hsieh, Liaofu Luo, H. C. Lee	Evidence for Growth of Microbial Genomes by Short Segmental Duplications.	CSB	2003	DBLP DOI BibTeX RDF
22	Nadia El-Mabrouk	Reconstructing an ancestral genome using minimum segments duplications and reversals.	J. Comput. Syst. Sci.	2002	DBLP DOI BibTeX RDF
22	Roderic D. M. Page, J. A. Cotton	Vertebrate Phylogenomics: Reconciled Trees and Gene Duplications.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
22	James B. Hendrickson, Ling Zhang	Duplications among Reaction Databases.	J. Chem. Inf. Comput. Sci.	2000	DBLP DOI BibTeX RDF
22	Kevin C. Chen, Dannie Durand, Martin Farach-Colton	NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Trees.	J. Comput. Biol.	2000	DBLP DOI BibTeX RDF
22	Carlos Martín-Vide, Victor Mitrana	On Context-Free Duplications.	Recent Topics in Mathematical and Computational Linguistics	2000	DBLP BibTeX RDF
22	Camillo Fiorentini, Pierangelo Miglioli	A Cut-free Sequent Calculus for the Logic of Constant Domains with a Limited Amount of Duplications.	Log. J. IGPL	1999	DBLP DOI BibTeX RDF
22	Bin Ma 0002, Ming Li 0001, Louxin Zhang	On reconstructing species trees from gene trees in term of duplications and losses.	RECOMB	1998	DBLP DOI BibTeX RDF
22	Pierangelo Miglioli, Ugo Moscato, Mario Ornaghi	Avoiding duplications in tableau systems for intuitionistic logic and Kuroda logic.	Log. J. IGPL	1997	DBLP DOI BibTeX RDF
22	Andreas Wagner	Genetic redundancy caused by gene duplications and its evolution in networks of transcriptional regulators.	Biol. Cybern.	1996	DBLP DOI BibTeX RDF
22	James Haralambides, Spyros Tragoudas	The Problem of Partitioning with Duplications and its Applications.	Int. J. Artif. Intell. Tools	1994	DBLP DOI BibTeX RDF
22	Ferng-Ching Lin, R. Charng	Pin reduction through variable duplications and substitutions in a data dependence graph.	Parallel Comput.	1989	DBLP DOI BibTeX RDF
22	Werner Kaegi, Jos Janssen, Paul Goodman	MIDIM Sound-Duplications and Their Applications.	ICMC	1986	DBLP BibTeX RDF
14	Taiga Takata, Yusuke Matsunaga	A heuristic algorithm for LUT-based FPGA technology mapping using the lower bound for DAG covering problem (abstract only).	FPGA	2010	DBLP DOI BibTeX RDF	fpga, technology mapping
14	Sangho Lee 0001, Jong Kim 0001, Sung Je Hong	Redistributing time-based rights between consumer devices for content sharing in DRM system.	Int. J. Inf. Sec.	2009	DBLP DOI BibTeX RDF	Rights sharing, Digital rights management, Domain model, Content sharing
14	Lars Arvestad, Jens Lagergren, Bengt Sennblad	The gene evolution model and computing its associated probabilities.	J. ACM	2009	DBLP DOI BibTeX RDF	probability, evolution, Phylogeny, duplication, reconciliation, loss, gene
14	Dejun Zheng, George Baciu, Jinlian Hu	Accurate indexing and classification for fabric weave patterns using entropy-based approach.	IEEE ICCI	2009	DBLP DOI BibTeX RDF
14	Mohammad Tanvir Parvez, Md. Saidur Rahman 0001, Shin-Ichi Nakano	Generating All Triangulations of Plane Graphs (Extended Abstract).	WALCOM	2009	DBLP DOI BibTeX RDF	Genealogical Tree, Graph, Triangulation, Polygon, Plane Graph
14	Lusheng Wang 0001, Binhai Zhu	On the Tractability of Maximal Strip Recovery.	TAMC	2009	DBLP DOI BibTeX RDF
14	Mikhail S. Gelfand, Alexei E. Kazakov, Yuri D. Korostelev, Olga N. Laikova, Andrey A. Mironov, Aleksandra B. Rakhmaninova, Dmitry A. Ravcheev, Dmitry A. Rodionov, Alexei G. Vitreschak	Evolution of Regulatory Systems in Bacteria (Invited Keynote Talk).	ISBRA	2009	DBLP DOI BibTeX RDF	regulation of transcription, regulation of translation, T-box, Comparative genomics, transcription factor, binding site, bacteria
14	Lingxiao Jiang, Zhendong Su 0001	Automatic mining of functionally equivalent code fragments via random testing.	ISSTA	2009	DBLP DOI BibTeX RDF	random testing, code clones, functional equivalence
14	Tatsuo Yotsukura, Miki Kinoshita, Satoru Yamagishi, Kazuyuki Ishihara, Yoshinori Moriizumi	Asset management system for digital production workflow.	SIGGRAPH ASIA Posters	2009	DBLP DOI BibTeX RDF
14	Xiuwei Zhang, Bernard M. E. Moret	Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models.	WABI	2009	DBLP DOI BibTeX RDF
14	Sébastien Angibaud, Damien Eveillard, Guillaume Fertin, Irena Rusu	Comparing Bacterial Genomes by Searching Their Common Intervals.	BICoB	2009	DBLP DOI BibTeX RDF	circular genome, comparative genomic, common interval
14	Mukul S. Bansal, Oliver Eulenstein	An Omega(n^2/ log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	Algorithms, Computational Biology, Phylogenetics, Gene Duplication, Supertrees
14	Yunhao Liu 0001	A Two-Hop Solution to Solving Topology Mismatch.	IEEE Trans. Parallel Distributed Syst.	2008	DBLP DOI BibTeX RDF
14	Benoît Legrand, Che Sau Chang, Sim Heng Ong, Soek-Ying Neo, Nallasivam Palanisamy	Automated Identification of Chromosome Segments Involved in Translocations by Combining Spectral Karyotyping and Banding Analysis.	IEEE Trans. Syst. Man Cybern. Part A	2008	DBLP DOI BibTeX RDF
14	Nathalie Henry, Anastasia Bezerianos, Jean-Daniel Fekete	Improving the Readability of Clustered Social Networks using Node Duplication.	IEEE Trans. Vis. Comput. Graph.	2008	DBLP DOI BibTeX RDF
14	Sébastien Angibaud, Guillaume Fertin, Irena Rusu	On the Approximability of Comparing Genomes with Duplicates.	WALCOM	2008	DBLP DOI BibTeX RDF	conserved intervals, genome rearrangement, duplicates, breakpoints, adjacencies, common intervals, APX-Hardness
14	Katsuhisa Yamanaka, Shin-Ichi Nakano	Listing All Plane Graphs.	WALCOM	2008	DBLP DOI BibTeX RDF
14	Milena Yankova, Horacio Saggion, Hamish Cunningham	Adopting ontologies for multisource identity resolution.	OBI	2008	DBLP DOI BibTeX RDF
14	Jason Flannick, Antal F. Novak, Chuong B. Do, Balaji S. Srinivasan, Serafim Batzoglou	Automatic Parameter Learning for Multiple Network Alignment.	RECOMB	2008	DBLP DOI BibTeX RDF
14	Yu Zhang 0002, Giltae Song, Tomás Vinar, Eric D. Green, Adam C. Siepel, Webb Miller	Reconstructing the Evolutionary History of Complex Human Gene Clusters.	RECOMB	2008	DBLP DOI BibTeX RDF
14	Xinghuo Zeng, Matthew J. Nesbitt, Jian Pei, Ke Wang 0001, Ismael A. Vergara, Nansheng Chen	OrthoCluster: a new tool for mining synteny blocks and applications in comparative genomics.	EDBT	2008	DBLP DOI BibTeX RDF
14	Amitabh Chaudhary, Danny Z. Chen, Xiaobo Sharon Hu, Michael T. Niemier, Ramprasad Ravichandran, Kevin Whitton	Fabricatable Interconnect and Molecular QCA Circuits.	IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.	2007	DBLP DOI BibTeX RDF
14	Yuefeng Li, Ning Zhong 0001	Mining Rough Association from Text Documents for Web Information Gathering.	Trans. Rough Sets	2007	DBLP DOI BibTeX RDF	Web information gathering, Rough sets, Association mining
14	Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk	Evolution of Tandemly Arrayed Genes in Multiple Species.	RECOMB-CG	2007	DBLP DOI BibTeX RDF
14	Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein, André Wehe	Heuristics for the Gene-Duplication Problem: A Theta ( n ) Speed-Up for the Local Search.	RECOMB	2007	DBLP DOI BibTeX RDF
14	Alireza Hadj Khodabakhshi, Mehdi Mirzazadeh, Arvind Gupta	An efficient data structure for applying multiple seeds in homology search.	BIBE	2007	DBLP DOI BibTeX RDF
14	Mehmet Yildirim	Heuristic Optimization Methods for Generating Test from a Question Bank.	MICAI	2007	DBLP DOI BibTeX RDF	Genetic algorithm, Simulated annealing, Test generating, Computer based assessment
14	Baba Piprani	Using ORM in an Ontology Based Approach for a Common Mapping Across Heterogeneous Applications.	OTM Workshops (1)	2007	DBLP DOI BibTeX RDF
14	Mehrdad Nojoumian, Timothy C. Lethbridge	Extracting Document Structure to Facilitate a Knowledge Base Creation for The UML Superstructure Specification.	ITNG	2007	DBLP DOI BibTeX RDF
14	Mukul S. Bansal, Oliver Eulenstein	An Omega(n2/log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem.	WABI	2007	DBLP DOI BibTeX RDF
14	Uday Seelam, Chien-Chung Chan	A Study of Data Reduction Using Multiset Decision Tables.	GrC	2007	DBLP DOI BibTeX RDF
14	Behshad Behzadi, Martin Vingron	Reconstructing Domain Compositions of Ancestral Multi-domain Proteins.	Comparative Genomics	2006	DBLP DOI BibTeX RDF	Evolution of Multidomain proteins, Tree reconciliation
14	Fei Guo, Jianmin Wang 0001, Deyi Li	Fingerprinting relational databases.	SAC	2006	DBLP DOI BibTeX RDF	database, robustness, watermark, fingerprint
14	Behshad Behzadi, Martin Vingron	An Improved Algorithm for the Macro-evolutionary Phylogeny Problem.	CPM	2006	DBLP DOI BibTeX RDF
14	Vladimir M. Vishnevsky, Alexander A. Safonov, Mikhail Yakimov, Eunsoo Shim, Alexander D. Gelman	Tag Routing for Efficient Blind Search in Peer-to-Peer Networks.	ISCC	2006	DBLP DOI BibTeX RDF
14	F. Rico, J. Forga, E. Sanvicente, L. de la Cruz	CerTicket Solution: Safe Home-Ticketing Through Internet.	EC-Web	2006	DBLP DOI BibTeX RDF	Quality aspects in EC, Security and Trust, E-ticketing, contactless smart cards, E-Payment
14	Yuefeng Li, Ning Zhong 0001	Mining Rough Association from Text Documents.	RSCTC	2006	DBLP DOI BibTeX RDF
14	Yuefeng Li, Ning Zhong 0001	Rough Association Rule Mining in Text Documents for Acquiring Web User Information Needs.	Web Intelligence	2006	DBLP DOI BibTeX RDF
14	Hung-Hsu Tsai, Ji-Shiung Cheng	Adaptive Signal-Dependent Audio Watermarking Based on Human Auditory System and Neural Networks.	Appl. Intell.	2005	DBLP DOI BibTeX RDF	audio authentication, human auditory system, neural networks, data hiding, audio watermarking
14	Shohei Hido, Hiroyuki Kawano	AMIOT: Induced Ordered Tree Mining in Tree-Structured Databases.	ICDM	2005	DBLP DOI BibTeX RDF
14	Yunhao Liu 0001, Lionel M. Ni, Li Xiao 0001, Abdol-Hossein Esfahanian	Approaching Optimal Peer-to-Peer Overlays.	MASCOTS	2005	DBLP DOI BibTeX RDF
14	Dannie Durand, Bjarni V. Halldórsson, Benjamin Vernot	A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction.	RECOMB	2005	DBLP DOI BibTeX RDF
14	Constantin Bannert, Jens Stoye	Protein Annotation by Secondary Structure Based Alignments (PASSTA).	CompLife	2005	DBLP DOI BibTeX RDF